These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1826 fasta sequence [CTGCAATCCGATTCAGGTAGATCGACAACGTCGGCGGGATGGACGATGCCGGTGAGATCTGCTCGTTCTCGCGGTCGTCGTCTTCGGCGAGGGAGGACGACGAGGAGGACCAGCGGTGGGCGGCGCTGGAGAAGCTGCCGACCTACGACCGAGCACGGACGGCGCTGCTGGCCATGCCGCCGGACGGCGAGCTGCGGGAGGTGAACGTCCAGCGGCTCGCCGCCGTGGAGCGGCGCGCGCTGCTGCAGCGCGTCGCCGGCGTCGCCGACGACCATGCACGCTTCCTCGCCAAGTTCAAAGAACGCGTCGATCGGTAAGGCGATCTCATATTGACATGGTGAATTTTGGTGGTTTTATACAGTGGAAAAGGACGTCACAATATTCTGCTCGAGCACTACTACACGTAATATTTTTTTACTAATAGTCATCTCAATGTAGGCTTTTGAAGTTAGATTTTTAGCGCAAGTAAAACAAAAAAAACTTCATTAGCACATAATTAATTAAGTATTAATAATTATAAACTTGAAAAATAGATTTATTAAATTTTTTAAAACCATTTTTATATAGATTTTATTTTGGCAAAAAACACATCATTTAATAGTTTGAAAAACATGCTAACAGAAAATAAGGAAGTTGAAGTTTGGAGTTGGAAAAGAACTGGGCCTTAGTTAGATACTCCCTCGGTCTCATTTTAAGTGTAACCATAAGCTTCTGTGTCCAACTTTGATCGTCCGTCTTATTTAAATTTTTTATAATTAATATTTTTTATTGTTATGAGATGATAAAACATGAATACATGACTTATGTTTTTAAATTTTTTCGAATAATTTTCAAATAAGACGGGTGATCAAAGTTGGGCAGGGAAAATCATGGCTGCACTTAAAATGTGACGGAGGGAGTAGAAGTTACAAAAAAAATTTAGATACACTCATAGCATGACACGTCCGTGTTAGTAAGAAAAAATTAATATGTATAGCCTTTTCATTTTTTTATGTTGTTTAAATAGTCGTAAAATGTTTTTCTTTCAAAAAAGTAGAAGATCTAAATTATTACTGCCTCGGTTCGATTTTAAGTGTAGCGGTGGGTTTCTGCATCTAACATCTCTCCATCCATCTTATTTGAATTTTTTTGTGATTAGTATTTTTATTGTTATTAGATTATAAAATATGAATAATACTTTATGTGCGACTTTTTTTTATAAACTTTTCAAATAAAGCGGATGGTCAAACGTTCCACACGGAAACACGACTACACTTAAAATATTGGATGGAGGGAGTATATGGTATATGTCTTCACAAGCATGCAAGCTTGATTTGATCCAAAAAGCTTGAATATGTCTTCACAAATATTCAAATCTGAATATGAATGGTCGGCATACTAGTGTTTAATCTGTGTCATTTTTTTCTCGAGTTGTAGATCAAATTTAGAATTGAGTTTTAATAGGATGATAAACAACTATTGTATAAGTGTTATTAAATATTTCGAGATTTTATATATTATACCTACTTGATTAATATTCCAATGGTTAGAATAAACGAGAGGATCCCTTAAATGCCAATAACCAGTTGTCCAGCTACATATCATATCATATTAAATCCTTAGATTTCGTAACCCATTACCAGCAGTGCTGTGATTAGTATAGGTATATATTTCTATTTTCACTATATTGTAAGTTATCTACTACCTCCGTCCCATTATAAGTGCACTTATGAATTTTCGTGTCCAACATTTAACTGTCCGTCTTATTTGAAAATTTTATAATTTTTTTATAGAAATTAGTCACAAATAAAGTACTATTCATATTTTATCATCTAATAACAAATAAA] [+] EMBL AK070409 [CTGCAATCCGATTCAGGTAGATCGACAACGTCGGCGGGATGGACGATGCCGGTGAGATCTGCTCGTTCTCGCGGTCGTCGTCTTCGGCGAGGGAGGACGACGAGGAGGACCAGCGGTGGGCGGCGCTGGAGAAGCTGCCGACCTACGACCGAGCACGGACGGCGCTGCTGGCCATGCCGCCGGACGGCGAGCTGCGGGAGGTGAACGTCCAGCGGCTCGCCGCCGTGGAGCGGCGCGCGCTGCTGCAGCGCGTCGCCGGCGTCGCCGACGACCATGCACGCTTCCTCGCCAAGTTCAAAGAACGCGTCGATCGGTAAGGCGATCTCATATTGACATGGTGAATTTTGGTGGTTTTATACAGTGGAAAAGGACGTCACAATATTCTGCTCGAGCACTACTACACGTAATATTTTTTTACTAATAGTCATCTCAATGTAGGCTTTTGAAGTTAGATTTTTAGCGCAAGTAAAACAAAAAAAACTTCATTAGCACATAATTAATTAAGTATTAATAATTATAAACTTGAAAAATAGATTTATTAAATTTTTTAAAACCATTTTTATATAGATTTTATTTTGGCAAAAAACACATCATTTAATAGTTTGAAAAACATGCTAACAGAAAATAAGGAAGTTGAAGTTTGGAGTTGGAAAAGAACTGGGCCTTAGTTAGATACTCCCTCGGTCTCATTTTAAGTGTAACCATAAGCTTCTGTGTCCAACTTTGATCGTCCGTCTTATTTAAATTTTTTATAATTAATATTTTTTATTGTTATGAGATGATAAAACATGAATACATGACTTATGTTTTTAAATTTTTTCGAATAATTTTCAAATAAGACGGGTGATCAAAGTTGGGCAGGGAAAATCATGGCTGCACTTAAAATGTGACGGAGGGAGTAGAAGTTACAAAAAAAATTTAGATACACTCATAGCATGACACGTCCGTGTTAGTAAGAAAAAATTAATATGTATAGCCTTTTCATTTTTTTATGTTGTTTAAATAGTCGTAAAATGTTTTTCTTTCAAAAAAGTAGAAGATCTAAATTATTACTGCCTCGGTTCGATTTTAAGTGTAGCGGTGGGTTTCTGCATCTAACATCTCTCCATCCATCTTATTTGAATTTTTTTGTGATTAGTATTTTTATTGTTATTAGATTATAAAATATGAATAATACTTTATGTGCGACTTTTTTTTATAAACTTTTCAAATAAAGCGGATGGTCAAACGTTCCACACGGAAACACGACTACACTTAAAATATTGGATGGAGGGAGTATATGGTATATGTCTTCACAAGCATGCAAGCTTGATTTGATCCAAAAAGCTTGAATATGTCTTCACAAATATTCAAATCTGAATATGAATGGTCGGCATACTAGTGTTTAATCTGTGTCATTTTTTTCTCGAGTTGTAGATCAAATTTAGAATTGAGTTTTAATAGGATGATAAACAACTATTGTATAAGTGTTATTAAATATTTCGAGATTTTATATATTATACCTACTTGATTAATATTCCAATGGTTAGAATAAACGAGAGGATCCCTTAAATGCCAATAACCAGTTGTCCAGCTACATATCATATCATATTAAATCCTTAGATTTCGTAACCCATTACCAGCAGTGCTGTGATTAGTATAGGTATATATTTCTATTTTCACTATATTGTAAGTTATCTACTACCTCCGTCCCATTATAAGTGCACTTATGAATTTTCGTGTCCAACATTTAACTGTCCGTCTTATTTGAAAATTTTATAATTTTTTTATAGAAATTAGTCACAAATAAAGTACTATTCATATTTTATCATCTAATAACAAATAAA] consensusID : consensus_240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1453 fasta sequence [GGCTGCAATCCGATTCAGGTAGATCGACAACGTCGGCGGGATGGACGATGCCGGTGAGATCTGCTCGTTCTCGCGGTCGTCGTCTTCGGCGAGGGAGGACGACGAGGAGGACCAGCGGTGGGCGGCGCTGGAGAAGCTGCCGACCTACGACCGAGCACGGACGGCGCTGCTGGCCATGCCGCCGGACGGCGAGCTGCGGGAGGTGAACGTCCAGCGGCTCGCCGCCGTGGAGCGGCGCGCGCTGCTGCAGCGCGTCGCCGGCGTCGCCGACGACCATGCACGCTTCCTCGCCAAGTTCAAAGAACGCGTCGATCGGGTTGGAATTAAGCTACCGACGGTTGAAGTGCGGTATGAGAATCTGAACATTGAAGCAGAGTCGTATGTGGGCAGGAGGGGACTTCCCACCATTCTCAATACATATACCATCATAATGGAGGGCCTGACAAATGCTCTTTGCATTACAAAAAAGATAACACACAAAATACCAATCCTTCACAATGTGAGTGGGATTATCAAGCCTCACAGAATGACCTTGTTGTTAGGCCCTCCAGGTTCAGGAAAAACATCACTATTATTGGCCTTGGCTGGAACATCAACCTTAAAGGTATCTGGAACAATAACTTACAATGGGCATTCAATGGAGGAATTTGTGCCCCAAAGATCTGCAGCTTATGTTAGCCAACATGATGTACATATGGCTGAACTGACAGTTCGGGAGACAGTCAATTTCGCTGCAAAGTGTCAAGGGGTTGGCCATCATTATGACTTGCTAATGGAACTGTTGAGGAGAGAGAAGGAACAAAATATTAAACCAGATCCAGAAATTGATATATATTTGAAGGCAGCTACAACAGGAGAGCAGAAAGCTGAGGTGGTCACAAATCACATACTAAAGATTTTGGGATTGGATATCTGTGCCGACACAATAGTAGGGAACAATATGCTGAGAGGCATATCAGGAGGGCAAAAAAAGCGACTAACGACAGCTGAGATGATTGTTACACCAGGACGAGCACTTTTCATGGATGAGATATCAACTGGACTTGATAGCTCGACAACATTCCAGATAGTTAACACCATCCGACAAACCATTCGCATTCTTGGTGGAACAGCAGTTATTGCTTTGCTACAGCCCGCACCTGAGACATATGAATTGTTTGATGATATAATTCTACTATCAGATGGTCAAGTTGTCTACAATGGCCCTCGTGATCATGTGCTTGAGTTCTTTAAATCGGTTGGATTCAAATGCCCTGAGAGAAAATGCGTAGCTGACTTCTTGCAGGAAGTGAGTTTTACCATGGTTTGACCTTAGCATTATTTTTGGTCAAGTGCTTAACTATGACTAATTATAAGTGGCTTATTTTAGGTTACATCTAGGAAAGATCAGAAAATACTGGATAGGTAGTGATGACACATACCAATATGTTCCTGTTACGATGATTGCTGAGGC] [+] EMBL AK108694 [GGCTGCAATCCGATTCAGGTAGATCGACAACGTCGGCGGGATGGACGATGCCGGTGAGATCTGCTCGTTCTCGCGGTCGTCGTCTTCGGCGAGGGAGGACGACGAGGAGGACCAGCGGTGGGCGGCGCTGGAGAAGCTGCCGACCTACGACCGAGCACGGACGGCGCTGCTGGCCATGCCGCCGGACGGCGAGCTGCGGGAGGTGAACGTCCAGCGGCTCGCCGCCGTGGAGCGGCGCGCGCTGCTGCAGCGCGTCGCCGGCGTCGCCGACGACCATGCACGCTTCCTCGCCAAGTTCAAAGAACGCGTCGATCGGGTTGGAATTAAGCTACCGACGGTTGAAGTGCGGTATGAGAATCTGAACATTGAAGCAGAGTCGTATGTGGGCAGGAGGGGACTTCCCACCATTCTCAATACATATACCATCATAATGGAGGGCCTGACAAATGCTCTTTGCATTACAAAAAAGATAACACACAAAATACCAATCCTTCACAATGTGAGTGGGATTATCAAGCCTCACAGAATGACCTTGTTGTTAGGCCCTCCAGGTTCAGGAAAAACATCACTATTATTGGCCTTGGCTGGAACATCAACCTTAAAGGTATCTGGAACAATAACTTACAATGGGCATTCAATGGAGGAATTTGTGCCCCAAAGATCTGCAGCTTATGTTAGCCAACATGATGTACATATGGCTGAACTGACAGTTCGGGAGACAGTCAATTTCGCTGCAAAGTGTCAAGGGGTTGGCCATCATTATGACTTGCTAATGGAACTGTTGAGGAGAGAGAAGGAACAAAATATTAAACCAGATCCAGAAATTGATATATATTTGAAGGCAGCTACAACAGGAGAGCAGAAAGCTGAGGTGGTCACAAATCACATACTAAAGATTTTGGGATTGGATATCTGTGCCGACACAATAGTAGGGAACAATATGCTGAGAGGCATATCAGGAGGGCAAAAAAAGCGACTAACGACAGCTGAGATGATTGTTACACCAGGACGAGCACTTTTCATGGATGAGATATCAACTGGACTTGATAGCTCGACAACATTCCAGATAGTTAACACCATCCGACAAACCATTCGCATTCTTGGTGGAACAGCAGTTATTGCTTTGCTACAGCCCGCACCTGAGACATATGAATTGTTTGATGATATAATTCTACTATCAGATGGTCAAGTTGTCTACAATGGCCCTCGTGATCATGTGCTTGAGTTCTTTAAATCGGTTGGATTCAAATGCCCTGAGAGAAAATGCGTAGCTGACTTCTTGCAGGAAGTGAGTTTTACCATGGTTTGACCTTAGCATTATTTTTGGTCAAGTGCTTAACTATGACTAATTATAAGTGGCTTATTTTAGGTTACATCTAGGAAAGATCAGAAAATACTGGATAGGTAGTGATGACACATACCAATATGTTCCTGTTACGATGATTGCTGAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_240#0 --CTGCAATCCGATTCAGGTAGATCGACAACGTCGGCGGGATGGACGATGCCGGTGAGAT 58 consensus_240#1 GGCTGCAATCCGATTCAGGTAGATCGACAACGTCGGCGGGATGGACGATGCCGGTGAGAT 60 ********************************************************** consensus_240#0 CTGCTCGTTCTCGCGGTCGTCGTCTTCGGCGAGGGAGGACGACGAGGAGGACCAGCGGTG 118 consensus_240#1 CTGCTCGTTCTCGCGGTCGTCGTCTTCGGCGAGGGAGGACGACGAGGAGGACCAGCGGTG 120 ************************************************************ consensus_240#0 GGCGGCGCTGGAGAAGCTGCCGACCTACGACCGAGCACGGACGGCGCTGCTGGCCATGCC 178 consensus_240#1 GGCGGCGCTGGAGAAGCTGCCGACCTACGACCGAGCACGGACGGCGCTGCTGGCCATGCC 180 ************************************************************ consensus_240#0 GCCGGACGGCGAGCTGCGGGAGGTGAACGTCCAGCGGCTCGCCGCCGTGGAGCGGCGCGC 238 consensus_240#1 GCCGGACGGCGAGCTGCGGGAGGTGAACGTCCAGCGGCTCGCCGCCGTGGAGCGGCGCGC 240 ************************************************************ consensus_240#0 GCTGCTGCAGCGCGTCGCCGGCGTCGCCGACGACCATGCACGCTTCCTCGCCAAGTTCAA 298 consensus_240#1 GCTGCTGCAGCGCGTCGCCGGCGTCGCCGACGACCATGCACGCTTCCTCGCCAAGTTCAA 300 ************************************************************ consensus_240#0 AGAACGCGTCGATCGGTAAGGCGATCTCATATTGACATGGTGAATTTTGGT----GGTTT 354 consensus_240#1 AGAACGCGTCGATCGGGTTGGAATTAAGCTACCGACG-GTTGAAGTGCGGTATGAGAATC 359 **************** ** * ** *** * **** * *** * * consensus_240#0 TATACAGTGGAAAAGGACGTCACAATATTCTGCTCGAGCACTACTACACGTAATATTTTT 414 consensus_240#1 TGAACATTGAAGCAGA--GTCG---TATGTGGGCAGGAGGGGACTTCCCACCAT-TCTCA 413 * *** ** * ** *** *** * * *** * * ** * * consensus_240#0 TTACTAATAGTCATCTCAATGTAGGCTTTTGAAGTTAGATTTTTAGCGCAAGTAAAACAA 474 consensus_240#1 ATACATATA-CCATCATAATGGAGGGCCTGACAAATGCTCTTT--------GCATTACAA 464 *** *** **** **** *** * * * *** * * **** consensus_240#0 AAAAAACTTCATTAGCACATAATTAATTAAGTATTAATAATTATAAACTTGAAAAATAGA 534 consensus_240#1 AAAAGA------TAACACACAA-------AATACCAATCCTTCACAATGTGAG---TGGG 508 **** * ** **** ** * ** *** ** ** *** * * consensus_240#0 TTTATTAAATTTTTTAAAACCATTTTTATAT-AGATTTTATTTTGGCAAAAAACACATCA 593 consensus_240#1 ATTATCAAGCCTCACAGAATGACCTTGTTGTTAGGCCCTCCAGGTTCAGGAAAAACATCA 568 **** ** * * ** * ** * * ** * ** *** ****** consensus_240#0 TT--TAATAGT-TTGAAAAACATGCTAACAGAAAATAAG---GAAGTTGAAGTTTGGAGT 647 consensus_240#1 CTATTATTGGCCTTGGCTGGAACATCAACCTTAAAGGTATCTGGAACAATAACTTACAAT 628 * ** * * *** * *** *** * * * ** * * consensus_240#0 TGGAAAAGAACTGGGCCTTAGTTAGATACTCCCTCGGTCT-CATTTTAAGTGTAACCATA 706 consensus_240#1 GGGCATTCAATGGAG---GAATTTG-TGCCCCAAAGATCTGCAGCTTATGT-TAGCCAAC 683 ** * ** * * * ** * * * ** * *** ** *** ** ** *** consensus_240#0 AGCTTCTGTGTCCAACTTTGATCGTCCGTCTTATTTAAATTTTTTATAATTAATATTTTT 766 consensus_240#1 ATGATGTACATATGGCTG-AACTGACAGT----TCGGGAG-----ACAGTCAATTTCGCT 733 * * * * ** * * * ** * * * * * *** * * consensus_240#0 TATTGTTATGAGATGATAAAACATGAATACATGACTTATGTTTTTAAATTTTTTCGAATA 826 consensus_240#1 GCAAAGTGTCAAGGGGTTGGCCATCATT--ATGACTTGC-TAATGGAACTGTTGAGGAGA 790 * * * * * *** * * ******* * * ** * ** * * * consensus_240#0 ATTTTCAAATAAGACGGGTGATCAAAGTTGGGCAGGGAAAATCAT--GGCTGCACTTAAA 884 consensus_240#1 GAGAAGGAACAAAATATTAAACCAGATCCAGAAATTGATATATATTTGAAGGCAGCTACA 850 ** ** * * ** * * * ** * ** * *** ** * consensus_240#0 ATGTGACGG-AGGGAGTAGAAGTTA-CAAAAAAAATTTAGATACACTCATAGCATGACAC 942 consensus_240#1 ACAGGAGAGCAGAAAGCTGAGGTGGTCACAAATCACATACTAAAGATTTTGGGATTGGAT 910 * ** * ** ** ** ** ** *** * ** * * * * ** * consensus_240#0 GTCCGTGTTAGTA----AGAAAAAATTAATATGT--ATAGCCTTTTCATTTTTTTATGTT 996 consensus_240#1 ATCTGTGCCGACACAATAGTAGGGAACAATATGCTGAGAGGCATATCAGGAGGGCAAAAA 970 ** *** * ** * * ****** * ** * * *** * consensus_240#0 GTTTAAATAGTCGTAA--AATGTTTTTCTTTCAAAAAAGTAGAAGATCTAAATTATTACT 1054 consensus_240#1 AAGCGACTAACGACAGCTGAGATGATTGTTACACCAGGACGAGCACTTTTCATGGATGAG 1030 * ** * * * ** ** ** * * * ** * consensus_240#0 GCCTCGGTTCGATTTTAAGTGTAGCGGTGGGTTTCTGCATCTAACATCTCTCCATCCATC 1114 consensus_240#1 ATATCAACTGGACTTGATAGCTCGACAACATTCCAGATAGTTAACACCATCCGA--CAAA 1088 ** * ** ** * * * * * ***** * * * ** consensus_240#0 TTATTTGAATTTTTTTGTGATTAGTATTTTTATTGTTATTAGATTATAAAATATGAATAA 1174 consensus_240#1 CCATTCGCATTCTTGGTGGAACAGCA-----GTTATTGCTTTGCTACAGCCCGCACCTGA 1143 *** * *** ** ** ** * ** ** * ** * * * consensus_240#0 TACTTTATGTGCGACTTTTTTTTATAAACTTTTCAAATAAAGCGGATGGTCAAACGTTCC 1234 consensus_240#1 GAC---ATATGAATTGTTTGATGATATAATTCTACTAT----CAGATGGTCAAGTTGTCT 1196 ** ** ** *** * *** * ** * ** * ********* ** consensus_240#0 ACACGGAAACACGACTACACTTAAAATATTGGATGGAGGGAGTATATGGTATATGTCTTC 1294 consensus_240#1 ACAATGGCCCTCGTGATCATGTGCTTGAGTTCTTTAAATCGGTTGGATTCAAATGCCCTG 1256 *** * * ** ** * * * * * ** * *** * * consensus_240#0 ACA-AGCATGCAAGCTTGATTTGATCCAAAAAGCTTGAATATGTCTTCACAAATATTCAA 1353 consensus_240#1 AGAGAAAATGCGTAGCTGACTTCTTGCAGGAAG--TGAGT-----TTTACCA-TGGTTTG 1308 * * * **** *** ** * ** *** *** * ** ** * * * consensus_240#0 ATCTGAATATGAATGGTCGGCATACTAGTGTTTAATCTGTGTCATTTTTTTCTCGAGTTG 1413 consensus_240#1 ACCTTAGCATTATTTTTGGTCA----AGTGCTTAA-CTATGACTAATTATAAGTGGCTT- 1362 * ** * ** * * * * ** **** **** ** ** * ** * * ** consensus_240#0 TAGATCAAATTTAGAATTGAGTTTTAATAGGATGATAAACAACTATTGTATAAGT-GTTA 1472 consensus_240#1 --------ATTTTAGGTTACATCT---AGGAAAGATCAGAAAATACTGGATAGGTAGTGA 1411 **** ** * * * * *** * ** ** ** *** ** ** * consensus_240#0 TTAAATATTTCGAGATTTTATATATTATACCTACTTGATTAATATTCCAATGGTTAGAAT 1532 consensus_240#1 TGACACATACCAATATGTTCC-TGTTACGATGATT--GCTGAGGC--------------- 1453 * * * ** * * ** ** * *** * * * * consensus_240#0 AAACGAGAGGATCCCTTAAATGCCAATAACCAGTTGTCCAGCTACATATCATATCATATT 1592 consensus_240#1 ------------------------------------------------------------ consensus_240#0 AAATCCTTAGATTTCGTAACCCATTACCAGCAGTGCTGTGATTAGTATAGGTATATATTT 1652 consensus_240#1 ------------------------------------------------------------ consensus_240#0 CTATTTTCACTATATTGTAAGTTATCTACTACCTCCGTCCCATTATAAGTGCACTTATGA 1712 consensus_240#1 ------------------------------------------------------------ consensus_240#0 ATTTTCGTGTCCAACATTTAACTGTCCGTCTTATTTGAAAATTTTATAATTTTTTTATAG 1772 consensus_240#1 ------------------------------------------------------------ consensus_240#0 AAATTAGTCACAAATAAAGTACTATTCATATTTTATCATCTAATAACAAATAAA 1826 consensus_240#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||