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Oryza sativa
cluster # 2406 cluster # 2406       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2406#0 length = 1367 sequences # 2  

consensusID : consensus_2406#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1367
fasta sequence
                              [CTGCAATCAAAAGGAGGCCTTCGATGCAATGTGATTGCCAATGCTGCCAACTGGAGGTTAAAACCTGGAGGTGGAGGGGTTAATGCAGCAATATACAATGCCGCTGGGGAAGATTTACAACGTGCAACCAAAGAATGCGCGGACACATTGAGACCTGGGAGCTCTGTTGCTGTCCCACTTCCATCAACTTCTCCTCTGCATCAAAGGGAAGGTGTGACCCATATCATACATGTGCTTGGGCCAAACATGAACCCAATGCGACCGGATTGTCTGAAGAATGACTATACAAAAGGTTCTAAGATTCTCCATGAGGCATATACATCACTTTTTGAGAACTTTGTAGCCATTGTCCAGAGCTGCATGGGGAAGCAGAACACCGAGCCTGCTTTAGAAAAGCCAGCAACTGCAGTGACATCACCTAATGATTCAAAAACGAAGCGAGAGTGCAACCATGATTCTGAGAGGACCAAAAAACACAAGTTGGTTCAACCCAATACATCCTCAAATCAGGCTAGAGAGGGAGATAGCAAGAGGAGTGGTGTTACCACTACTAAGACTTGGGGATCCTGGGCCCAAGCTCTTTATGAGCTTGCGATGCACCCAGAAAATTACAAGAACTCTGATTCTCTCCTAGAGATATCTGATGACTTCGTTGTTCTGAACGACCTCTATCCCAAGGCCAAAAGGCATGTTTTGGTT-GTATCTAGGAA-GGATGGTCTT-GATTCTCTAGCA-GATGTCAAGAAAGAACA-CTTACCTTTGCTGAGG-AGAATGCATTCTG-CTGGAGTGAAATGGGC-ACAGAAGTT-CCTAGAGGAA-GATTCATCTTTGGTATTCAGACTCGGATACCATTCGGTTCCATCCATGAGGCAATTGCACCTGCACATCATAAGCCAGGACTTCAACTCTGCCAGTTTGAAGAACAAGAAACACTGGAACTCCTTCACCACAACATTTTTCCTTGATTCTGTTGATGTCATTGAAGAAATCGATCAGCGTGGATCAACAACTATCAGCAGTGACGACAGGGTGCTCGCAATGGAGCTTCGTTGCCACAGATGCAGGAGTGCCCATCCAAATATCCCAAAGCTCAAATCCCACATTGCAAGCTGTAAATCGTCCTTCCCCTCCCATCTTCTGCAGAAAGATAGGCTGTTGTCATCATCGACAATGCATATGGATTGCACTTAGAACTCTGCGACCAATGGTCCTTCCAAGCACATTTTGTGTTTCGTGCTTCCAGAAGGATAGGAAATTAGGAAGGAATCTAGTTTTTCCTTGTTATGCCTGTCTTGCAGAATCCTGCCTTGTGAACAAACTGCAGTGCATCTGATCGTTAAAAAGAAAAACAGAGATCTGAAGTGTTGCAAGCA]

[+] EMBL AK058372             [CTGCAATCAAAAGGAGGCCTTCGATGCAATGTGATTGCCAATGCTGCCAACTGGAGGTTAAAACCTGGAGGTGGAGGGGTTAATGCAGCAATATACAATGCCGCTGGGGAAGATTTACAACGTGCAACCAAAGAATGCGCGGACACATTGAGACCTGGGAGCTCTGTTGCTGTCCCACTTCCATCAACTTCTCCTCTGCATCAAAGGGAAGGTGTGACCCATATCATACATGTGCTTGGGCCAAACATGAACCCAATGCGACCGGATTGTCTGAAGAATGACTATACAAAAGGTTCTAAGATTCTCCATGAGGCATATACATCACTTTTTGAGAACTTTGTAGCCATTGTCCAGAGCTGCATGGGGAAGCAGAACACCGAGCCTGCTTTAGAAAAGCCAGCAACTGCAGTGACATCACCTAATGATTCAAAAACGAAGCGAGAGTGCAACCATGATTCTGAGAGGACCAAAAAACACAAGTTGGTTCAACCCAATACATCCTCAAATCAGGCTAGAGAGGGAGATAGCAAGAGGAGTGGTGTTACCACTACTAAGACTTGGGGATCCTGGGCCCAAGCTCTTTATGAGCTTGCGATGCACCCAGAAAATTACAAGAACTCTGATTCTCTCCTAGAGATATCTGATGACTTCGTTGTTCTGAACGACCTCTATCCCAAGGCCAAAAGGCATGTTTTGGTT GTATCTAGGAA GGATGGTCTT GATTCTCTAGCA GATGTCAAGAAAGAACA CTTACCTTTGCTGAGG AGAATGCATTCTG CTGGAGTGAAATGGGC ACAGAAGTT CCTAGAGGAA GATTCATCTTTGGTATTCAGACTCGGATACCATTCGGTTCCATCCATGAGGCAATTGCACCTGCACATCATAAGCCAGGACTTCAACTCTGCCAGTTTGAAGAACAAGAAACACTGGAACTCCTTCACCACAACATTTTTCCTTGATTCTGTTGATGTCATTGAAGAAATCGATCAGCGTGGATCAACAACTATCAGCAGTGACGACAGGGTGCTCGCAATGGAGCTTCGTTGCCACAGATGCAGGAGTGCCCATCCAAATATCCCAAAGCTCAAATCCCACATTGCAAGCTGTAAATCGTCCTTCCCCTCCCATCTTCTGCAGAAAGATAGGCTGTTGTCATCATCGACAATGCATATGGATTGCACTTAGAACTCTGCGACCAATGGTCCTTCCAAGCACATTTTGTGTTTCGTGCTTCCAGAAGGATAGGAAATTAGGAAGGAATCTAGTTTTTCCTTGTTATGCCTGTCTTGCAGAATCCTGCCTTGTGAACAAACTGCAGTGCATCTGATCGTTAAAAAGAAAAACAGAGATCTGAAGTGTTGCAAGC ]
[-] EMBL CA762341             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     tccgAAAGGGCATGTTTTAGTTGGCATCTTGGAAGGGATGGTCTTGGATTTGCTAGCACGATGTCCAGACAGACCACCTTCCCTCTGCTGGGGAAGATTGCATTATGCCTGAATTCCAATCGGCGCCCGGAGTTCCCTAGAGGAAGGATTCATCTTTGGTATTCAGACTCGGATACCATTCGGTTCCATCCATGAGGCAATTGCACCTGCACATCATAGGCCAGGACTTCACCTGTGCCAGTTTGAAGAACAAGAAGCACTGGAGCTCCTTCACCACAACATTTTTCCTTGATTCTGCTGATGTCATTGAAGAAATCGATCAGCGTGGATCAGCAACTATCAGCAGTGACGACAGGGTGCTCGCAATGGAGCTTCGTTGCCACAGATGCAGGAGTGCCCATCCAAATATCCCAAAGCTCAAATCCCACATTGCAAGCTGTAAATCGTCCTTCCCCTCCCATCTTCTGCAGAAAGATAGGCTGTTGTCATCATCGACAATGCATATGGATTGCACTTAGAACTCTGCGACCAATGGTCCTTCCAAGCACATTTTGTGTTTCGTGCTTCCAGAAGGATAGGAAATTAGGAAGGAATCTAGTTTTTCCTTGTTATGCCTGTCTTGCAGAATCCTGCCTTGTGATCAAACTGCAGTGCATCTGATCGTTAAAAAGAAAAACAGAGATCTGAAGTGTTGCAAaaa]


>consensus_2406#0 CTGCAATCAAAAGGAGGCCTTCGATGCAATGTGATTGCCAATGCTGCCAACTGGAGGTTA AAACCTGGAGGTGGAGGGGTTAATGCAGCAATATACAATGCCGCTGGGGAAGATTTACAA CGTGCAACCAAAGAATGCGCGGACACATTGAGACCTGGGAGCTCTGTTGCTGTCCCACTT CCATCAACTTCTCCTCTGCATCAAAGGGAAGGTGTGACCCATATCATACATGTGCTTGGG CCAAACATGAACCCAATGCGACCGGATTGTCTGAAGAATGACTATACAAAAGGTTCTAAG ATTCTCCATGAGGCATATACATCACTTTTTGAGAACTTTGTAGCCATTGTCCAGAGCTGC ATGGGGAAGCAGAACACCGAGCCTGCTTTAGAAAAGCCAGCAACTGCAGTGACATCACCT AATGATTCAAAAACGAAGCGAGAGTGCAACCATGATTCTGAGAGGACCAAAAAACACAAG TTGGTTCAACCCAATACATCCTCAAATCAGGCTAGAGAGGGAGATAGCAAGAGGAGTGGT GTTACCACTACTAAGACTTGGGGATCCTGGGCCCAAGCTCTTTATGAGCTTGCGATGCAC CCAGAAAATTACAAGAACTCTGATTCTCTCCTAGAGATATCTGATGACTTCGTTGTTCTG AACGACCTCTATCCCAAGGCCAAAAGGCATGTTTTGGTTGTATCTAGGAAGGATGGTCTT GATTCTCTAGCAGATGTCAAGAAAGAACACTTACCTTTGCTGAGGAGAATGCATTCTGCT GGAGTGAAATGGGCACAGAAGTTCCTAGAGGAAGATTCATCTTTGGTATTCAGACTCGGA TACCATTCGGTTCCATCCATGAGGCAATTGCACCTGCACATCATAAGCCAGGACTTCAAC TCTGCCAGTTTGAAGAACAAGAAACACTGGAACTCCTTCACCACAACATTTTTCCTTGAT TCTGTTGATGTCATTGAAGAAATCGATCAGCGTGGATCAACAACTATCAGCAGTGACGAC AGGGTGCTCGCAATGGAGCTTCGTTGCCACAGATGCAGGAGTGCCCATCCAAATATCCCA AAGCTCAAATCCCACATTGCAAGCTGTAAATCGTCCTTCCCCTCCCATCTTCTGCAGAAA GATAGGCTGTTGTCATCATCGACAATGCATATGGATTGCACTTAGAACTCTGCGACCAAT GGTCCTTCCAAGCACATTTTGTGTTTCGTGCTTCCAGAAGGATAGGAAATTAGGAAGGAA TCTAGTTTTTCCTTGTTATGCCTGTCTTGCAGAATCCTGCCTTGTGAACAAACTGCAGTG CATCTGATCGTTAAAAAGAAAAACAGAGATCTGAAGTGTTGCAAGCA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)