These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 938 fasta sequence [GCCGTGCGAGGGGACTGTTGCGCAGCGGCAGCGACCACGACACGTCGTTGTTCCCTCTGCTCCCGCTGTCGGTGTCGACGAGAGCGAGCTGCCCAGCGGCCGTGAGCCCGTGACGGGAGCACCTCCTCCACACCGATCCTTCCCCTGTCATTGAGGGTGATCTGAACCTCACCCTCACCCGTCGCCTCAAGTGCATCGACACCCACCGTCCTGAGTACGACGACGCCCGTCATTAAGGTAGTGTTTGGTTGGAGGGATATTCCGGGATAGGATGGAATGATCCCCAAAACCAAGTGTTTGGTTGAGAGATTAGGAGGGATAGGATGGTTCCAAAAAGAGAATATTCCTCCAATATTCGGGACAATCTCATCCGCGAAAATCTAGCGGACGGCGCCATCCCACTTCGCACGCGCGCGGTAACCCTCTGGCTACCTTTTTTTTTTTCACCGCACCCCTTTCCTTTCTCCTTCGCTCACCGGCGGCGGGAGCACGCGAGCAAGGCAAGCCAGCAGCGGGAGGGCGCAAGCAATAGTGAGGGCGAGCCGACGACGGGAGCGTGCGAGCATGGGCGAGCCGACGACGTGAGGGCGCGAGCAAGGGCGAGACCAAGCTAGTGGCAGGGAGCACGCGAGCACGCGAGCATGGGCGAGCCGGCGGTGGGAGCACGCGTGCAGGGGTGAGCCAGCGGCGGCCACGGCGGTGTCCAACCAGCCTCGATCCGCCATCGGCCTCCAACGTCAGCAGCACGCGCGATCTTCCTTCTCCAATCCTCCCAGAATCCCGACGACAACATTGGATGGGGATTTTGTTTCAGATCTGTACATGTTCTTTCAGTAGACATTTTTTTTTATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGGTGAGATGATTAATTAGTGCTTGAGCATGATATGGCAACATATTCA] [+] EMBL AK108667 [GCCGTGCGAGGGGACTGTTGCGCAGCGGCAGCGACCACGACACGTCGTTGTTCCCTCTGCTCCCGCTGTCGGTGTCGACGAGAGCGAGCTGCCCAGCGGCCGTGAGCCCGTGACGGGAGCACCTCCTCCACACCGATCCTTCCCCTGTCATTGAGGGTGATCTGAACCTCACCCTCACCCGTCGCCTCAAGTGCATCGACACCCACCGTCCTGAGTACGACGACGCCCGTCATTAAGGTAGTGTTTGGTTGGAGGGATATTCCGGGATAGGATGGAATGATCCCCAAAACCAAGTGTTTGGTTGAGAGATTAGGAGGGATAGGATGGTTCCAAAAAGAGAATATTCCTCCAATATTCGGGACAATCTCATCCGCGAAAATCTAGCGGACGGCGCCATCCCACTTCGCACGCGCGCGGTAACCCTCTGGCTACCTTTTTTTTTTTCACCGCACCCCTTTCCTTTCTCCTTCGCTCACCGGCGGCGGGAGCACGCGAGCAAGGCAAGCCAGCAGCGGGAGGGCGCAAGCAATAGTGAGGGCGAGCCGACGACGGGAGCGTGCGAGCATGGGCGAGCCGACGACGTGAGGGCGCGAGCAAGGGCGAGACCAAGCTAGTGGCAGGGAGCACGCGAGCACGCGAGCATGGGCGAGCCGGCGGTGGGAGCACGCGTGCAGGGGTGAGCCAGCGGCGGCCACGGCGGTGTCCAACCAGCCTCGATCCGCCATCGGCCTCCAACGTCAGCAGCACGCGCGATCTTCCTTCTCCAATCCTCCCAGAATCCCGACGACAACATTGGATGGGGATTTTGTTTCAGATCTGTACATGTTCTTTCAGTAGACATTTTTTTTTATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGGTGAGATGATTAATTAGTGCTTGAGCATGATATGGCAACATATTCA] consensusID : consensus_2427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [TCATTTGACAGGAGCACGCGAGCAGGGGTGAGCCGGCGGCGGCCACGGCGGTGTCCAACCAGCCTCCATCCGCCGTCGGCCTCCAATGTCAGCAGCATGCGTGATGTTCCTTCTCCAATCCTCCTAGAATCCCAACGACAGCATTGGATGGGGATTTCGTTTCAGATCTGTACATGTTCTTTCAGTAGATATTTTTTTCATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGATGAGATGATTAATTAGTGCTTGAGCATGATATGGCAACATATTTATCTTTTTGTTAAAAAAAAAA] [+] EMBL BI802473 [TCATTTGACAGGAGCACGCGAGCAGGGGTGAGCCGGCGGCGGCCACGGCGGTGTCCAACCAGCCTCCATCCGCCGTCGGCCTCCAATGTCAGCAGCATGCGTGATGTTCCTTCTCCAATCCTCCTAGAATCCCAACGACAGCATTGGATGGGGATTTCGTTTCAGATCTGTACATGTTCTTTCAGTAGATATTTTTTTCATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGATGAGATGATTAATTAGTGCTTGAGCATGATATGGCAACATATTTATCTTTTTGTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2427#0 GCCGTGCGAGGGGACTGTTGCGCAGCGGCAGCGACCACGACACGTCGTTGTTCCCTCTGC 60 consensus_2427#1 ------------------------------------------------------------ consensus_2427#0 TCCCGCTGTCGGTGTCGACGAGAGCGAGCTGCCCAGCGGCCGTGAGCCCGTGACGGGAGC 120 consensus_2427#1 ------------------------------------------------------------ consensus_2427#0 ACCTCCTCCACACCGATCCTTCCCCTGTCATTGAGGGTGATCTGAACCTCACCCTCACCC 180 consensus_2427#1 ------------------------------------------------------------ consensus_2427#0 GTCGCCTCAAGTGCATCGACACCCACCGTCCTGAGTACGACGACGCCCGTCATTAAGGTA 240 consensus_2427#1 ------------------------------------------------------------ consensus_2427#0 GTGTTTGGTTGGAGGGATATTCCGGGATAGGATGGAATGATCCCCAAAACCAAGTGTTTG 300 consensus_2427#1 ------------------------------------------------------------ consensus_2427#0 GTTGAGAGATTAGGAGGGATAGGATGGTTCCAAAAAGAGAATATTCCTCCAATATTCGGG 360 consensus_2427#1 ------------------------------------------------------------ consensus_2427#0 ACAATCTCATCCGCGAAAATCTAGCGGACGGCGCCATCCCACTTCGCACGCGCGCGGTAA 420 consensus_2427#1 ------------------------------------------------------------ consensus_2427#0 CCCTCTGGCTACCTTTTTTTTTTTCACCGCACCCCTTTCCTTTCTCCTTCGCTCACCGGC 480 consensus_2427#1 ------------------------------------------------------------ consensus_2427#0 GGCGGGAGCACGCGAGCAAGGCAAGCCAGCAGCGGGAGGGCGCAAGCAATAGTGAGGGCG 540 consensus_2427#1 ------------------------------------------------------------ consensus_2427#0 AGCCGACGACGGGAGCGTGCGAGCATGGGCGAGCCGACGACGTGAGGGCGCGAGCAAGGG 600 consensus_2427#1 ------------------------------------------------------------ consensus_2427#0 CGAGACCAAGCTAGTGGCAGGGAGCACGCGAGCACGCGAGCATGGGCGAGCCGGCGGTGG 660 consensus_2427#1 -------------------------------------------------TCATTTGACAG 11 * * * consensus_2427#0 GAGCACGCGTGCAGGGGTGAGCCAGCGGCGGCCACGGCGGTGTCCAACCAGCCTCGATCC 720 consensus_2427#1 GAGCACGCGAGCAGGGGTGAGCCGGCGGCGGCCACGGCGGTGTCCAACCAGCCTCCATCC 71 ********* ************* ******************************* **** consensus_2427#0 GCCATCGGCCTCCAACGTCAGCAGCACGCGCGATCTTCCTTCTCCAATCCTCCCAGAATC 780 consensus_2427#1 GCCGTCGGCCTCCAATGTCAGCAGCATGCGTGATGTTCCTTCTCCAATCCTCCTAGAATC 131 *** *********** ********** *** *** ****************** ****** consensus_2427#0 CCGACGACAACATTGGATGGGGATTTTGTTTCAGATCTGTACATGTTCTTTCAGTAGACA 840 consensus_2427#1 CCAACGACAGCATTGGATGGGGATTTCGTTTCAGATCTGTACATGTTCTTTCAGTAGATA 191 ** ****** **************** ******************************* * consensus_2427#0 TTTTTTTTTATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGGTGAGATG 900 consensus_2427#1 TTTTTTTC-ATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGATGAGATG 250 ******* ******************************************* ******* consensus_2427#0 ATTAATTAGTGCTTGAGCATGATATGGCAACATATTCA-------------------- 938 consensus_2427#1 ATTAATTAGTGCTTGAGCATGATATGGCAACATATTTATCTTTTTGTTAAAAAAAAAA 308 ************************************ * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||