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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2427 cluster # 2427       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2427#0 length = 938 sequences # 1  
consensus_2427#1 length = 308 sequences # 1  

consensusID : consensus_2427#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 938
fasta sequence
                              [GCCGTGCGAGGGGACTGTTGCGCAGCGGCAGCGACCACGACACGTCGTTGTTCCCTCTGCTCCCGCTGTCGGTGTCGACGAGAGCGAGCTGCCCAGCGGCCGTGAGCCCGTGACGGGAGCACCTCCTCCACACCGATCCTTCCCCTGTCATTGAGGGTGATCTGAACCTCACCCTCACCCGTCGCCTCAAGTGCATCGACACCCACCGTCCTGAGTACGACGACGCCCGTCATTAAGGTAGTGTTTGGTTGGAGGGATATTCCGGGATAGGATGGAATGATCCCCAAAACCAAGTGTTTGGTTGAGAGATTAGGAGGGATAGGATGGTTCCAAAAAGAGAATATTCCTCCAATATTCGGGACAATCTCATCCGCGAAAATCTAGCGGACGGCGCCATCCCACTTCGCACGCGCGCGGTAACCCTCTGGCTACCTTTTTTTTTTTCACCGCACCCCTTTCCTTTCTCCTTCGCTCACCGGCGGCGGGAGCACGCGAGCAAGGCAAGCCAGCAGCGGGAGGGCGCAAGCAATAGTGAGGGCGAGCCGACGACGGGAGCGTGCGAGCATGGGCGAGCCGACGACGTGAGGGCGCGAGCAAGGGCGAGACCAAGCTAGTGGCAGGGAGCACGCGAGCACGCGAGCATGGGCGAGCCGGCGGTGGGAGCACGCGTGCAGGGGTGAGCCAGCGGCGGCCACGGCGGTGTCCAACCAGCCTCGATCCGCCATCGGCCTCCAACGTCAGCAGCACGCGCGATCTTCCTTCTCCAATCCTCCCAGAATCCCGACGACAACATTGGATGGGGATTTTGTTTCAGATCTGTACATGTTCTTTCAGTAGACATTTTTTTTTATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGGTGAGATGATTAATTAGTGCTTGAGCATGATATGGCAACATATTCA]

[+] EMBL AK108667             [GCCGTGCGAGGGGACTGTTGCGCAGCGGCAGCGACCACGACACGTCGTTGTTCCCTCTGCTCCCGCTGTCGGTGTCGACGAGAGCGAGCTGCCCAGCGGCCGTGAGCCCGTGACGGGAGCACCTCCTCCACACCGATCCTTCCCCTGTCATTGAGGGTGATCTGAACCTCACCCTCACCCGTCGCCTCAAGTGCATCGACACCCACCGTCCTGAGTACGACGACGCCCGTCATTAAGGTAGTGTTTGGTTGGAGGGATATTCCGGGATAGGATGGAATGATCCCCAAAACCAAGTGTTTGGTTGAGAGATTAGGAGGGATAGGATGGTTCCAAAAAGAGAATATTCCTCCAATATTCGGGACAATCTCATCCGCGAAAATCTAGCGGACGGCGCCATCCCACTTCGCACGCGCGCGGTAACCCTCTGGCTACCTTTTTTTTTTTCACCGCACCCCTTTCCTTTCTCCTTCGCTCACCGGCGGCGGGAGCACGCGAGCAAGGCAAGCCAGCAGCGGGAGGGCGCAAGCAATAGTGAGGGCGAGCCGACGACGGGAGCGTGCGAGCATGGGCGAGCCGACGACGTGAGGGCGCGAGCAAGGGCGAGACCAAGCTAGTGGCAGGGAGCACGCGAGCACGCGAGCATGGGCGAGCCGGCGGTGGGAGCACGCGTGCAGGGGTGAGCCAGCGGCGGCCACGGCGGTGTCCAACCAGCCTCGATCCGCCATCGGCCTCCAACGTCAGCAGCACGCGCGATCTTCCTTCTCCAATCCTCCCAGAATCCCGACGACAACATTGGATGGGGATTTTGTTTCAGATCTGTACATGTTCTTTCAGTAGACATTTTTTTTTATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGGTGAGATGATTAATTAGTGCTTGAGCATGATATGGCAACATATTCA]


>consensus_2427#0 GCCGTGCGAGGGGACTGTTGCGCAGCGGCAGCGACCACGACACGTCGTTGTTCCCTCTGC TCCCGCTGTCGGTGTCGACGAGAGCGAGCTGCCCAGCGGCCGTGAGCCCGTGACGGGAGC ACCTCCTCCACACCGATCCTTCCCCTGTCATTGAGGGTGATCTGAACCTCACCCTCACCC GTCGCCTCAAGTGCATCGACACCCACCGTCCTGAGTACGACGACGCCCGTCATTAAGGTA GTGTTTGGTTGGAGGGATATTCCGGGATAGGATGGAATGATCCCCAAAACCAAGTGTTTG GTTGAGAGATTAGGAGGGATAGGATGGTTCCAAAAAGAGAATATTCCTCCAATATTCGGG ACAATCTCATCCGCGAAAATCTAGCGGACGGCGCCATCCCACTTCGCACGCGCGCGGTAA CCCTCTGGCTACCTTTTTTTTTTTCACCGCACCCCTTTCCTTTCTCCTTCGCTCACCGGC GGCGGGAGCACGCGAGCAAGGCAAGCCAGCAGCGGGAGGGCGCAAGCAATAGTGAGGGCG AGCCGACGACGGGAGCGTGCGAGCATGGGCGAGCCGACGACGTGAGGGCGCGAGCAAGGG CGAGACCAAGCTAGTGGCAGGGAGCACGCGAGCACGCGAGCATGGGCGAGCCGGCGGTGG GAGCACGCGTGCAGGGGTGAGCCAGCGGCGGCCACGGCGGTGTCCAACCAGCCTCGATCC GCCATCGGCCTCCAACGTCAGCAGCACGCGCGATCTTCCTTCTCCAATCCTCCCAGAATC CCGACGACAACATTGGATGGGGATTTTGTTTCAGATCTGTACATGTTCTTTCAGTAGACA TTTTTTTTTATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGGTGAGATG ATTAATTAGTGCTTGAGCATGATATGGCAACATATTCA



consensusID : consensus_2427#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence
                              [TCATTTGACAGGAGCACGCGAGCAGGGGTGAGCCGGCGGCGGCCACGGCGGTGTCCAACCAGCCTCCATCCGCCGTCGGCCTCCAATGTCAGCAGCATGCGTGATGTTCCTTCTCCAATCCTCCTAGAATCCCAACGACAGCATTGGATGGGGATTTCGTTTCAGATCTGTACATGTTCTTTCAGTAGATATTTTTTTCATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGATGAGATGATTAATTAGTGCTTGAGCATGATATGGCAACATATTTATCTTTTTGTTAAAAAAAAAA]

[+] EMBL BI802473             [TCATTTGACAGGAGCACGCGAGCAGGGGTGAGCCGGCGGCGGCCACGGCGGTGTCCAACCAGCCTCCATCCGCCGTCGGCCTCCAATGTCAGCAGCATGCGTGATGTTCCTTCTCCAATCCTCCTAGAATCCCAACGACAGCATTGGATGGGGATTTCGTTTCAGATCTGTACATGTTCTTTCAGTAGATATTTTTTTCATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGATGAGATGATTAATTAGTGCTTGAGCATGATATGGCAACATATTTATCTTTTTGTTAAAAAAAAAA]


>consensus_2427#1 TCATTTGACAGGAGCACGCGAGCAGGGGTGAGCCGGCGGCGGCCACGGCGGTGTCCAACC AGCCTCCATCCGCCGTCGGCCTCCAATGTCAGCAGCATGCGTGATGTTCCTTCTCCAATC CTCCTAGAATCCCAACGACAGCATTGGATGGGGATTTCGTTTCAGATCTGTACATGTTCT TTCAGTAGATATTTTTTTCATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTG TGATGAGATGATTAATTAGTGCTTGAGCATGATATGGCAACATATTTATCTTTTTGTTAA AAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2427#0      GCCGTGCGAGGGGACTGTTGCGCAGCGGCAGCGACCACGACACGTCGTTGTTCCCTCTGC 60
consensus_2427#1      ------------------------------------------------------------
                                                                                  

consensus_2427#0      TCCCGCTGTCGGTGTCGACGAGAGCGAGCTGCCCAGCGGCCGTGAGCCCGTGACGGGAGC 120
consensus_2427#1      ------------------------------------------------------------
                                                                                  

consensus_2427#0      ACCTCCTCCACACCGATCCTTCCCCTGTCATTGAGGGTGATCTGAACCTCACCCTCACCC 180
consensus_2427#1      ------------------------------------------------------------
                                                                                  

consensus_2427#0      GTCGCCTCAAGTGCATCGACACCCACCGTCCTGAGTACGACGACGCCCGTCATTAAGGTA 240
consensus_2427#1      ------------------------------------------------------------
                                                                                  

consensus_2427#0      GTGTTTGGTTGGAGGGATATTCCGGGATAGGATGGAATGATCCCCAAAACCAAGTGTTTG 300
consensus_2427#1      ------------------------------------------------------------
                                                                                  

consensus_2427#0      GTTGAGAGATTAGGAGGGATAGGATGGTTCCAAAAAGAGAATATTCCTCCAATATTCGGG 360
consensus_2427#1      ------------------------------------------------------------
                                                                                  

consensus_2427#0      ACAATCTCATCCGCGAAAATCTAGCGGACGGCGCCATCCCACTTCGCACGCGCGCGGTAA 420
consensus_2427#1      ------------------------------------------------------------
                                                                                  

consensus_2427#0      CCCTCTGGCTACCTTTTTTTTTTTCACCGCACCCCTTTCCTTTCTCCTTCGCTCACCGGC 480
consensus_2427#1      ------------------------------------------------------------
                                                                                  

consensus_2427#0      GGCGGGAGCACGCGAGCAAGGCAAGCCAGCAGCGGGAGGGCGCAAGCAATAGTGAGGGCG 540
consensus_2427#1      ------------------------------------------------------------
                                                                                  

consensus_2427#0      AGCCGACGACGGGAGCGTGCGAGCATGGGCGAGCCGACGACGTGAGGGCGCGAGCAAGGG 600
consensus_2427#1      ------------------------------------------------------------
                                                                                  

consensus_2427#0      CGAGACCAAGCTAGTGGCAGGGAGCACGCGAGCACGCGAGCATGGGCGAGCCGGCGGTGG 660
consensus_2427#1      -------------------------------------------------TCATTTGACAG 11
                                                                        *    *   *

consensus_2427#0      GAGCACGCGTGCAGGGGTGAGCCAGCGGCGGCCACGGCGGTGTCCAACCAGCCTCGATCC 720
consensus_2427#1      GAGCACGCGAGCAGGGGTGAGCCGGCGGCGGCCACGGCGGTGTCCAACCAGCCTCCATCC 71
                      ********* ************* ******************************* ****

consensus_2427#0      GCCATCGGCCTCCAACGTCAGCAGCACGCGCGATCTTCCTTCTCCAATCCTCCCAGAATC 780
consensus_2427#1      GCCGTCGGCCTCCAATGTCAGCAGCATGCGTGATGTTCCTTCTCCAATCCTCCTAGAATC 131
                      *** *********** ********** *** *** ****************** ******

consensus_2427#0      CCGACGACAACATTGGATGGGGATTTTGTTTCAGATCTGTACATGTTCTTTCAGTAGACA 840
consensus_2427#1      CCAACGACAGCATTGGATGGGGATTTCGTTTCAGATCTGTACATGTTCTTTCAGTAGATA 191
                      ** ****** **************** ******************************* *

consensus_2427#0      TTTTTTTTTATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGGTGAGATG 900
consensus_2427#1      TTTTTTTC-ATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGATGAGATG 250
                      *******  ******************************************* *******

consensus_2427#0      ATTAATTAGTGCTTGAGCATGATATGGCAACATATTCA-------------------- 938
consensus_2427#1      ATTAATTAGTGCTTGAGCATGATATGGCAACATATTTATCTTTTTGTTAAAAAAAAAA 308
                      ************************************ *                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)