These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2230 fasta sequence [TTCTTTCCCCCCGTCTCTCATGCGCCATTGATCGGATCGCTTGATGCCGCATGCCGCCACCGACGATGATGCTGCCGCCGTCGCCGGGCGACTCCGACCCGTCGGGGTCTCGCGACATGGACGACGAGGACCTCGTCGAGGATCTCCTCGTCACCGTCAACTCGGCGCGGGCCTTCGTCGAGTTCCGCCGCACGCAGCGCAAGGAGTGCGCCAACCTCCTCCGCTGGCTGGAGCTCGTCCTCCCGCTCCTCGAGGAGCTCCGCGACTCGGCGCCGCCGCTCACCGAGGACGCCTACCACCGCCTCGCCCTGCTCGGACGCGCCTTCTCCGCCGCGCGCCGCCTCCTCCGGTCGTGCCACGACGGCAGCAAGATCTACCTGGCGCTGGAGAGCGAGGCGGTGCAGGGGAGATTCCGCGCCGTGTACGAGAAGATGAACTCCGCTCTCGACGGGATGCCCTACTCGGAGCTCGCCATCTCCGATGAAGTCAAGGAGCAGGTGGAGCTGATGAACGCTCAGCTGACGCGATGTAAGAAGCGGGCGGACACGCAGGACATCGAGCTGTCCATGGATCTGATGGTGATCCTCGACAACAAGGAGGGGGAGAGGAACGCGGACAGGGCGATCCTGGAGAGGCTGGCCAAGAAGCTGGAGCTGCAAACGCTGGCGGACCTGAGGGCGGAGACGATGGCCATCAAGAAGCTCATCAGCGAGAGGAACGGGCAGAGCGGCGATAGCACCAAGCAGATCATCGAGCTCCTCAACAAGTTCAAGTAGGTCGCCGGCGTCGACGAGAAGAACGTCCTCGGCGAGGTCTCCGTGACGAAATCCCTCGACAAGTGCCCCTCGTTGATGATCCCCAACGACTTCCTCTGCCCGATCACGCTCGCCATCATGAGGGATCCTGTCATCGTTGCCACTGGACAGACGTACGAGAGGAGGAGCATCCAGAAATGGCTGGACAGCGGGGAGAGGACGTGCCCGAAGACGCGGCAGCGGCTGTCGCACATGTCGCTGGCGCCCAACTACGCGCTCAAGAACCTGATCCTGGAATGGTGCGACAAGAACAAGGTGGAGCTGCAGAAGAGGGAGCCGGAGCCCGTGGCGGAGCAGGACGACGAGCATCAGCGCGGCGCCGAGGACATCCCGTCGCTGGTGGAAGGCATGTCGTCGATCCACCTCGACGTGCAGCGGAAGGCTGTGAAGAGGATCCGGATGCTGTCCAAGGAGTGCCCGGAGAACAGGACGCTCATCGCCGACAGCGGCGGCATCCCGGCGCTCATCGGGCTCCTCGCCTGCCCGGACAAGAAGGTGCAGGAGAACACGGTCACGTCGCTGCTGAACCTGTCCATCGACGAGAGCAACAAGCGCCACATCACCAAGGGGGGAGCACTCCCGCTCATCATCGAGATCCTCCGCAACGGCAGCGCGGAGGCGCAGGAGAACTCCGCCGCGACGCTGTTCAGCCTGTCCATGATCGACGAGAACAAGCTCACCATCGGGAGGCTGGGCGGCATCGCGCCGCTCGTCGAGCTCCTCCAGAACGGCAGCATCAGGGGGAAGAAGGACGCCGCCACGGCCATCTTCAACCTGGTGCTCAACCAGCAGAACAAGGTGAGGGCCACCCAGGCCGGCATCGTGCCGGCGCTTCTCAAGATCATCGACGACAAGGCGCTCAACATGGTGGACGAGGCGCTGTCCATCTTCCTCCTGCTCTCCTCCAACGCCGCCTGCTGCGGCGAGATCGGGACGACGCCGTTCATCGAGAAGCTCGTGCGTCTCATCAAGGACGGCACGCCCAAGAACAAGGAGTGCGCGCTGTCCGTGCTGCTGGAGCTGGGGTCCAAGAACAAGCCGCTGCTGGTGCACGCGCTCAGGTTCGGACTCCATGAGGATCTCTCCAAGATCGCCAAGAACGGCACCAGTAGAGCGCAGAGGAAGGCGACCTCTCTCATTCAGCTGGCGCGCAAGTGCTACTGAAGATGAGGACCCCGTTTGTAATTGTAACTCATTTTCTTTCCCCCTCTTTCTCAGTAGAAAAAATTCTGTTGCTTGCCCTGTTCTAGCTGAATGCATATGTGGTGTATCGCCAGAATGGGGAATTGGTGGTGGAATTGCTGAAAAAAAACACCCTAAATGTATTTGTGCCGATTTCAGTCAAACTAGTTGATATTCCTATACCATTATAAGCTGAGTTAGATTTTAATGCTAGGATATACGATATTAGTTTA] [+] EMBL AK072890 [TTCTTTCCCCCCGTCTCTCATGCGCCATTGATCGGATCGCTTGATGCCGCATGCCGCCACCGACGATGATGCTGCCGCCGTCGCCGGGCGACTCCGACCCGTCGGGGTCTCGCGACATGGACGACGAGGACCTCGTCGAGGATCTCCTCGTCACCGTCAACTCGGCGCGGGCCTTCGTCGAGTTCCGCCGCACGCAGCGCAAGGAGTGCGCCAACCTCCTCCGCTGGCTGGAGCTCGTCCTCCCGCTCCTCGAGGAGCTCCGCGACTCGGCGCCGCCGCTCACCGAGGACGCCTACCACCGCCTCGCCCTGCTCGGACGCGCCTTCTCCGCCGCGCGCCGCCTCCTCCGGTCGTGCCACGACGGCAGCAAGATCTACCTGGCGCTGGAGAGCGAGGCGGTGCAGGGGAGATTCCGCGCCGTGTACGAGAAGATGAACTCCGCTCTCGACGGGATGCCCTACTCGGAGCTCGCCATCTCCGATGAAGTCAAGGAGCAGGTGGAGCTGATGAACGCTCAGCTGACGCGATGTAAGAAGCGGGCGGACACGCAGGACATCGAGCTGTCCATGGATCTGATGGTGATCCTCGACAACAAGGAGGGGGAGAGGAACGCGGACAGGGCGATCCTGGAGAGGCTGGCCAAGAAGCTGGAGCTGCAAACGCTGGCGGACCTGAGGGCGGAGACGATGGCCATCAAGAAGCTCATCAGCGAGAGGAACGGGCAGAGCGGCGATAGCACCAAGCAGATCATCGAGCTCCTCAACAAGTTCAAGTAGGTCGCCGGCGTCGACGAGAAGAACGTCCTCGGCGAGGTCTCCGTGACGAAATCCCTCGACAAGTGCCCCTCGTTGATGATCCCCAACGACTTCCTCTGCCCGATCACGCTCGCCATCATGAGGGATCCTGTCATCGTTGCCACTGGACAGACGTACGAGAGGAGGAGCATCCAGAAATGGCTGGACAGCGGGGAGAGGACGTGCCCGAAGACGCGGCAGCGGCTGTCGCACATGTCGCTGGCGCCCAACTACGCGCTCAAGAACCTGATCCTGGAATGGTGCGACAAGAACAAGGTGGAGCTGCAGAAGAGGGAGCCGGAGCCCGTGGCGGAGCAGGACGACGAGCATCAGCGCGGCGCCGAGGACATCCCGTCGCTGGTGGAAGGCATGTCGTCGATCCACCTCGACGTGCAGCGGAAGGCTGTGAAGAGGATCCGGATGCTGTCCAAGGAGTGCCCGGAGAACAGGACGCTCATCGCCGACAGCGGCGGCATCCCGGCGCTCATCGGGCTCCTCGCCTGCCCGGACAAGAAGGTGCAGGAGAACACGGTCACGTCGCTGCTGAACCTGTCCATCGACGAGAGCAACAAGCGCCACATCACCAAGGGGGGAGCACTCCCGCTCATCATCGAGATCCTCCGCAACGGCAGCGCGGAGGCGCAGGAGAACTCCGCCGCGACGCTGTTCAGCCTGTCCATGATCGACGAGAACAAGCTCACCATCGGGAGGCTGGGCGGCATCGCGCCGCTCGTCGAGCTCCTCCAGAACGGCAGCATCAGGGGGAAGAAGGACGCCGCCACGGCCATCTTCAACCTGGTGCTCAACCAGCAGAACAAGGTGAGGGCCACCCAGGCCGGCATCGTGCCGGCGCTTCTCAAGATCATCGACGACAAGGCGCTCAACATGGTGGACGAGGCGCTGTCCATCTTCCTCCTGCTCTCCTCCAACGCCGCCTGCTGCGGCGAGATCGGGACGACGCCGTTCATCGAGAAGCTCGTGCGTCTCATCAAGGACGGCACGCCCAAGAACAAGGAGTGCGCGCTGTCCGTGCTGCTGGAGCTGGGGTCCAAGAACAAGCCGCTGCTGGTGCACGCGCTCAGGTTCGGACTCCATGAGGATCTCTCCAAGATCGCCAAGAACGGCACCAGTAGAGCGCAGAGGAAGGCGACCTCTCTCATTCAGCTGGCGCGCAAGTGCTACTGAAGATGAGGACCCCGTTTGTAATTGTAACTCATTTTCTTTCCCCCTCTTTCTCAGTAGAAAAAATTCTGTTGCTTGCCCTGTTCTAGCTGAATGCATATGTGGTGTATCGCCAGAATGGGGAATTGGTGGTGGAATTGCTGAAAAAAAACACCCTAAATGTATTTGTGCCGATTTCAGTCAAACTAGTTGATATTCCTATACCATTATAAGCTGAGTTAGATTTTAATGCTAGGATATACGATATTAGTTTA] consensusID : consensus_2428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [CGAGACAAGGGGCTCAACATGGTGGACGAGGCGCTGTCCATCTTCCTCCTGCTCTCCTCCAACGCCGCCTGNTGCGGCGAGATCGGGACGACGCCGTTCATCGAGAAGCTCGTGCGTCTCATCAAGGACGGCACGCCCAAGAACAAGGAGTGCGCGCTGTCCGTGCTGCTGGAGCTGGGGTCCAAGAACAAGCCGCTGCTGGTGCACGCGCTCAGGTTCGGACTCCATGAGGATCTCTCCAAGATCGCCAAGAACGGCACCAGTAGAGCGCAGAGGAAGGCGACCTCTCTCATTCAGCTGGCGCGCAAGTGCTACTGAAGATGAGGACCCCGTTTGTAATTGTAACTCATTTTCTTTCCCCCTCTTTCTCAGTAGAAAAAATTCTGTTGCTTGCCCTGTTCTAGCTGAATGCATATGTGGTGTATCGCCAGAATGGGGAATTGGTGGTGGAATTGCTGAAAAAAAACACNCCTAAATGTATTTGTGCCGATTTCAGTCAAACTAGTTGATATTCCTATACCAAAAAAAAAAAAAAA] [-] EMBL CA762420 [CGAGACAAGGGGCTCAACATGGTGGACGAGGCGCTGTCCATCTTCCTCCTGCTCTCCTCCAACGCCGCCTGNTGCGGCGAGATCGGGACGACGCCGTTCATCGAGAAGCTCGTGCGTCTCATCAAGGACGGCACGCCCAAGAACAAGGAGTGCGCGCTGTCCGTGCTGCTGGAGCTGGGGTCCAAGAACAAGCCGCTGCTGGTGCACGCGCTCAGGTTCGGACTCCATGAGGATCTCTCCAAGATCGCCAAGAACGGCACCAGTAGAGCGCAGAGGAAGGCGACCTCTCTCATTCAGCTGGCGCGCAAGTGCTACTGAAGATGAGGACCCCGTTTGTAATTGTAACTCATTTTCTTTCCCCCTCTTTCTCAGTAGAAAAAATTCTGTTGCTTGCCCTGTTCTAGCTGAATGCATATGTGGTGTATCGCCAGAATGGGGAATTGGTGGTGGAATTGCTGAAAAAAAACACNCCTAAATGTATTTGTGCCGATTTCAGTCAAACTAGTTGATATTCCTATACCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2428#0 TTCTTTCCCCCCGTCTCTCATGCGCCATTGATCGGATCGCTTGATGCCGCATGCCGCCAC 60 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 CGACGATGATGCTGCCGCCGTCGCCGGGCGACTCCGACCCGTCGGGGTCTCGCGACATGG 120 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 ACGACGAGGACCTCGTCGAGGATCTCCTCGTCACCGTCAACTCGGCGCGGGCCTTCGTCG 180 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 AGTTCCGCCGCACGCAGCGCAAGGAGTGCGCCAACCTCCTCCGCTGGCTGGAGCTCGTCC 240 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 TCCCGCTCCTCGAGGAGCTCCGCGACTCGGCGCCGCCGCTCACCGAGGACGCCTACCACC 300 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 GCCTCGCCCTGCTCGGACGCGCCTTCTCCGCCGCGCGCCGCCTCCTCCGGTCGTGCCACG 360 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 ACGGCAGCAAGATCTACCTGGCGCTGGAGAGCGAGGCGGTGCAGGGGAGATTCCGCGCCG 420 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 TGTACGAGAAGATGAACTCCGCTCTCGACGGGATGCCCTACTCGGAGCTCGCCATCTCCG 480 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 ATGAAGTCAAGGAGCAGGTGGAGCTGATGAACGCTCAGCTGACGCGATGTAAGAAGCGGG 540 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 CGGACACGCAGGACATCGAGCTGTCCATGGATCTGATGGTGATCCTCGACAACAAGGAGG 600 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 GGGAGAGGAACGCGGACAGGGCGATCCTGGAGAGGCTGGCCAAGAAGCTGGAGCTGCAAA 660 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 CGCTGGCGGACCTGAGGGCGGAGACGATGGCCATCAAGAAGCTCATCAGCGAGAGGAACG 720 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 GGCAGAGCGGCGATAGCACCAAGCAGATCATCGAGCTCCTCAACAAGTTCAAGTAGGTCG 780 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 CCGGCGTCGACGAGAAGAACGTCCTCGGCGAGGTCTCCGTGACGAAATCCCTCGACAAGT 840 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 GCCCCTCGTTGATGATCCCCAACGACTTCCTCTGCCCGATCACGCTCGCCATCATGAGGG 900 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 ATCCTGTCATCGTTGCCACTGGACAGACGTACGAGAGGAGGAGCATCCAGAAATGGCTGG 960 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 ACAGCGGGGAGAGGACGTGCCCGAAGACGCGGCAGCGGCTGTCGCACATGTCGCTGGCGC 1020 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 CCAACTACGCGCTCAAGAACCTGATCCTGGAATGGTGCGACAAGAACAAGGTGGAGCTGC 1080 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 AGAAGAGGGAGCCGGAGCCCGTGGCGGAGCAGGACGACGAGCATCAGCGCGGCGCCGAGG 1140 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 ACATCCCGTCGCTGGTGGAAGGCATGTCGTCGATCCACCTCGACGTGCAGCGGAAGGCTG 1200 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 TGAAGAGGATCCGGATGCTGTCCAAGGAGTGCCCGGAGAACAGGACGCTCATCGCCGACA 1260 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 GCGGCGGCATCCCGGCGCTCATCGGGCTCCTCGCCTGCCCGGACAAGAAGGTGCAGGAGA 1320 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 ACACGGTCACGTCGCTGCTGAACCTGTCCATCGACGAGAGCAACAAGCGCCACATCACCA 1380 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 AGGGGGGAGCACTCCCGCTCATCATCGAGATCCTCCGCAACGGCAGCGCGGAGGCGCAGG 1440 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 AGAACTCCGCCGCGACGCTGTTCAGCCTGTCCATGATCGACGAGAACAAGCTCACCATCG 1500 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 GGAGGCTGGGCGGCATCGCGCCGCTCGTCGAGCTCCTCCAGAACGGCAGCATCAGGGGGA 1560 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 AGAAGGACGCCGCCACGGCCATCTTCAACCTGGTGCTCAACCAGCAGAACAAGGTGAGGG 1620 consensus_2428#1 ------------------------------------------------------------ consensus_2428#0 CCACCCAGGCCGGCATCGTGCCGGCGCTTCTCAAGATCATCGACGACAAGGCGCTCAACA 1680 consensus_2428#1 ----------------------------------------CGA-GACAAGGGGCTCAACA 19 *** ******* ******** consensus_2428#0 TGGTGGACGAGGCGCTGTCCATCTTCCTCCTGCTCTCCTCCAACGCCGCCTGCTGCGGCG 1740 consensus_2428#1 TGGTGGACGAGGCGCTGTCCATCTTCCTCCTGCTCTCCTCCAACGCCGCCTGNTGCGGCG 79 **************************************************** ******* consensus_2428#0 AGATCGGGACGACGCCGTTCATCGAGAAGCTCGTGCGTCTCATCAAGGACGGCACGCCCA 1800 consensus_2428#1 AGATCGGGACGACGCCGTTCATCGAGAAGCTCGTGCGTCTCATCAAGGACGGCACGCCCA 139 ************************************************************ consensus_2428#0 AGAACAAGGAGTGCGCGCTGTCCGTGCTGCTGGAGCTGGGGTCCAAGAACAAGCCGCTGC 1860 consensus_2428#1 AGAACAAGGAGTGCGCGCTGTCCGTGCTGCTGGAGCTGGGGTCCAAGAACAAGCCGCTGC 199 ************************************************************ consensus_2428#0 TGGTGCACGCGCTCAGGTTCGGACTCCATGAGGATCTCTCCAAGATCGCCAAGAACGGCA 1920 consensus_2428#1 TGGTGCACGCGCTCAGGTTCGGACTCCATGAGGATCTCTCCAAGATCGCCAAGAACGGCA 259 ************************************************************ consensus_2428#0 CCAGTAGAGCGCAGAGGAAGGCGACCTCTCTCATTCAGCTGGCGCGCAAGTGCTACTGAA 1980 consensus_2428#1 CCAGTAGAGCGCAGAGGAAGGCGACCTCTCTCATTCAGCTGGCGCGCAAGTGCTACTGAA 319 ************************************************************ consensus_2428#0 GATGAGGACCCCGTTTGTAATTGTAACTCATTTTCTTTCCCCCTCTTTCTCAGTAGAAAA 2040 consensus_2428#1 GATGAGGACCCCGTTTGTAATTGTAACTCATTTTCTTTCCCCCTCTTTCTCAGTAGAAAA 379 ************************************************************ consensus_2428#0 AATTCTGTTGCTTGCCCTGTTCTAGCTGAATGCATATGTGGTGTATCGCCAGAATGGGGA 2100 consensus_2428#1 AATTCTGTTGCTTGCCCTGTTCTAGCTGAATGCATATGTGGTGTATCGCCAGAATGGGGA 439 ************************************************************ consensus_2428#0 ATTGGTGGTGGAATTGCTGAAAAAAAACACCC-TAAATGTATTTGTGCCGATTTCAGTCA 2159 consensus_2428#1 ATTGGTGGTGGAATTGCTGAAAAAAAACACNCCTAAATGTATTTGTGCCGATTTCAGTCA 499 ****************************** * *************************** consensus_2428#0 AACTAGTTGATATTCCTATACCATTATAAGCTGAGTTAGATTTTAATGCTAGGATATACG 2219 consensus_2428#1 AACTAGTTGATATTCCTATACCAAAAAAAAAAAAAAA----------------------- 536 *********************** * ** * consensus_2428#0 ATATTAGTTTA 2230 consensus_2428#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||