These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2075 fasta sequence [CGTAATAATAATCAGGTTGAGCTCCAGCATCCGGGGCACGGGGAGGAGGAAGGAGGGATCGGGGGATCCATGGCGGACACCGGCGGACGGCCGGAGGTGTCGCTGGCCACGGTCCGGTCGCCGGGCCACCCGGCAGCTTCTACGACGGCAGCGGCGGCGGCGGATCTCGGCCACGCTGACACCGGGCAAGAGAAGCCCACCGTCGAGAGCGCCCAACCGGCGAACGGTGCCGCTCCGATGGGCGAGTGCGGCACGGAGTACAGGGGCCTCCCCGACGGCGACGCCGGCGGGCCAATGCCGTCGTCGGCACGCACGGTTTCGATGATCCCGCTCATCTTCCTCATCTTCTACGAGGTGTCCGGCGGGCCGTTCGGGATCGAGGACAGCGTGGGCGCGGCCGGGCCGCTGCTCGCCATCATCGGCTTCTTGGTCCTCCCCGTCATCTGGAGCATCCCGGAGGCGCTGATCACGGCGGAGCTGGGCGCCATGTTCCCGGAGAACGGCGGGTACGTCGTGTGGGTGGCGTCGGCGCTCGGCCCGTACTGGGGGTTCCAGCAAGGGTGGATGAAGTGGTTGAGCGGCGTCATCGACAACGCGCTCTACCCCGTCCTCTTCTTGGACTACCTCAAGTCCGGCGTCCCGGCGCTCGGCGGAGGCGCGCCGAGGGCGTTCGCCGTCGTCGGCCTGACGGCCGTGCTGACATTGCTGAATTACCGGGGGCTCACCGTCGTCGGATGGGTGGCGATCTGCCTTGGCGTCTTCTCCCTCCTCCCTTTTTTCGTCATGGGGCTCATCGCGCTCCCCAAGCTCCGGCCGGCGAGGTGGCTCGTGATCGACCTCCACAACGTCGATTGGAATCTGTACCTGAACACTCTGTTCTGGAACCTCAACTACTGGGATTCGATCAGCACGTTGGCCGGCGAGGTGAAGAATCCCGGCAAGACGCTGCCCAAGGCGCTGTTCTACGCGGTCATCTTCGTGGTGGTCGCCTACCTGTACCCTCTCCTCGCCGGGACGGGAGCCGTGCCGCTGGACAGGGGGCAGTGGACAGACGGCTACTTCGCGGACATCGCGAAGCTGCTCGGCGGCGCGTGGCTGATGTGGTGGGTGCAGTCGGCGGCGGCGCTGTCGAACATGGGCATGTTCGTGGCGGAGATGAGCAGCGACTCGTACCAGCTGCTGGGCATGGCGGAGCGGGGCATGCTCCCGTCCTTCTTCGCGGCGCGGTCGCGGTACGGCACGCCGCTGGCGGGCATCCTCTTCTCGGCCTCCGGCGTGCTGCTGCTCTCGATGATGAGCTTCCAGGAGATCGTGGCGGCCGAGAACTTCCTCTACTGCTTCGGCATGCTCCTCGAGTTCGTCGCCTTCATCCTGCACCGGGTGAGGCGCCCCGACGCGGCGCGCCCATACAGGGTGCCGCTGGGCACAGCCGGGTGCGTGGCGATGCTGGTGCCGCCGACGGCGCTGATCGCCGTGGTGCTCGCGCTGTCCACGCTGAAGGTGGCGGTGGTGAGCCTCGGCGCGGTGGCCATGGGGCTCGTGCTGCAGCCGGCGCTGAGGTTCGTGGAGAAGAAGCGGTGGCTGAGGTTCTCCGTTAACCCGGATCTCCCGGAGATCGGCGTGATTCGCCCGCCCGCCGCGCCGGACGAGCCGTTGGTTCCGTAGGACGCCCAGAAATCAGTTAGGCCCTGGAACTGGAAAATGGACAATTTGGATTGCAGTCCAACTATAGGGAGAAAATAGAAGTCCTGCAGAATCATGTATACGTTGCAACAAAAAGAATTTAATCCAACGAAATCCACTGAAATCAACGGAAGCACTATTCTGTTGGAATTTTGGAGAAATTTTTCCATGAGTTCAAAGCTCTTTCTTTGTTTTGAATGAAGACTGTGAGTTCAAACCTCGTCTTCACATCTTATTGCTGCTCATGCAATCCCGTGCTTGTCATGTATTGCATTAAGGCATTTTTTTTACAGGAATCATGGCACCTTAGTTACATGTGTTGTAAACTTTCAATTTGTGTTTTTTTTACCTTTTTCATTTAGGATTTAAAAAGGTGGTGCACTAATATTAAT] [+] EMBL AK068055 [CGTAATAATAATCAGGTTGAGCTCCAGCATCCGGGGCACGGGGAGGAGGAAGGAGGGATCGGGGGATCCATGGCGGACACCGGCGGACGGCCGGAGGTGTCGCTGGCCACGGTCCGGTCGCCGGGCCACCCGGCAGCTTCTACGACGGCAGCGGCGGCGGCGGATCTCGGCCACGCTGACACCGGGCAAGAGAAGCCCACCGTCGAGAGCGCCCAACCGGCGAACGGTGCCGCTCCGATGGGCGAGTGCGGCACGGAGTACAGGGGCCTCCCCGACGGCGACGCCGGCGGGCCAATGCCGTCGTCGGCACGCACGGTTTCGATGATCCCGCTCATCTTCCTCATCTTCTACGAGGTGTCCGGCGGGCCGTTCGGGATCGAGGACAGCGTGGGCGCGGCCGGGCCGCTGCTCGCCATCATCGGCTTCTTGGTCCTCCCCGTCATCTGGAGCATCCCGGAGGCGCTGATCACGGCGGAGCTGGGCGCCATGTTCCCGGAGAACGGCGGGTACGTCGTGTGGGTGGCGTCGGCGCTCGGCCCGTACTGGGGGTTCCAGCAAGGGTGGATGAAGTGGTTGAGCGGCGTCATCGACAACGCGCTCTACCCCGTCCTCTTCTTGGACTACCTCAAGTCCGGCGTCCCGGCGCTCGGCGGAGGCGCGCCGAGGGCGTTCGCCGTCGTCGGCCTGACGGCCGTGCTGACATTGCTGAATTACCGGGGGCTCACCGTCGTCGGATGGGTGGCGATCTGCCTTGGCGTCTTCTCCCTCCTCCCTTTTTTCGTCATGGGGCTCATCGCGCTCCCCAAGCTCCGGCCGGCGAGGTGGCTCGTGATCGACCTCCACAACGTCGATTGGAATCTGTACCTGAACACTCTGTTCTGGAACCTCAACTACTGGGATTCGATCAGCACGTTGGCCGGCGAGGTGAAGAATCCCGGCAAGACGCTGCCCAAGGCGCTGTTCTACGCGGTCATCTTCGTGGTGGTCGCCTACCTGTACCCTCTCCTCGCCGGGACGGGAGCCGTGCCGCTGGACAGGGGGCAGTGGACAGACGGCTACTTCGCGGACATCGCGAAGCTGCTCGGCGGCGCGTGGCTGATGTGGTGGGTGCAGTCGGCGGCGGCGCTGTCGAACATGGGCATGTTCGTGGCGGAGATGAGCAGCGACTCGTACCAGCTGCTGGGCATGGCGGAGCGGGGCATGCTCCCGTCCTTCTTCGCGGCGCGGTCGCGGTACGGCACGCCGCTGGCGGGCATCCTCTTCTCGGCCTCCGGCGTGCTGCTGCTCTCGATGATGAGCTTCCAGGAGATCGTGGCGGCCGAGAACTTCCTCTACTGCTTCGGCATGCTCCTCGAGTTCGTCGCCTTCATCCTGCACCGGGTGAGGCGCCCCGACGCGGCGCGCCCATACAGGGTGCCGCTGGGCACAGCCGGGTGCGTGGCGATGCTGGTGCCGCCGACGGCGCTGATCGCCGTGGTGCTCGCGCTGTCCACGCTGAAGGTGGCGGTGGTGAGCCTCGGCGCGGTGGCCATGGGGCTCGTGCTGCAGCCGGCGCTGAGGTTCGTGGAGAAGAAGCGGTGGCTGAGGTTCTCCGTTAACCCGGATCTCCCGGAGATCGGCGTGATTCGCCCGCCCGCCGCGCCGGACGAGCCGTTGGTTCCGTAGGACGCCCAGAAATCAGTTAGGCCCTGGAACTGGAAAATGGACAATTTGGATTGCAGTCCAACTATAGGGAGAAAATAGAAGTCCTGCAGAATCATGTATACGTTGCAACAAAAAGAATTTAATCCAACGAAATCCACTGAAATCAACGGAAGCACTATTCTGTTGGAATTTTGGAGAAATTTTTCCATGAGTTCAAAGCTCTTTCTTTGTTTTGAATGAAGACTGTGAGTTCAAACCTCGTCTTCACATCTTATTGCTGCTCATGCAATCCCGTGCTTGTCATGTATTGCATTAAGGCATTTTTTTTACAGGAATCATGGCACCTTAGTTACATGTGTTGTAAACTTTCAATTTGTGTTTTTTTTACCTTTTTCATTTAGGATTTAAAAAGGTGGTGCACTAATATTAAT] consensusID : consensus_2445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [GCGCTTTATGCTCACGCTGGTGATAATTTGTAAACTGGAAAGCGACGTACTGCCACTATTTATGCTGGATGCGCGCTTCCACTCCGCACGGCCGGAGGCGTAATAATAATCAGGTTGAGCTCCAGCATCCGGGGCACGGGGAGGAGGAAGGAGGGATCGGGGGATCCATGGCGGACACCGGCGGACGGCCGGAGGTGTCGCTGGCCACGGTCCGGTCGCCGGGCCACCCGGCAGCTTCTACGACGGCAGCGGCGGCGGCGGATCTCGGCCACGCTGACACCGGGCAAGAGAAGCCCACCGTCGAGCGCCCAACCGGCGAACGGTGCCGCTCCGATGGGCGAGTGCGGCACGGAGTACAGGGGCCTCCCCGACGGCGACGCCGGCGGGCCAATGCCGTCGTCGGCACGCACGGTTTCGATGATCCCTGCCCTTTGTACACACCGCCCGTCGCTGAAAAGATAGAAAAGAGAGAAAAAAGGAAAAAGAAGACAGACATAGAATAAGAATAATAGAATATAAATAGCAGAGGAGTAAACAGATAGAGAAGTGAAAGAAGATGAAGA] [+] EMBL AK105354 [GCGCTTTATGCTCACGCTGGTGATAATTTGTAAACTGGAAAGCGACGTACTGCCACTATTTATGCTGGATGCGCGCTTCCACTCCGCACGGCCGGAGGCGTAATAATAATCAGGTTGAGCTCCAGCATCCGGGGCACGGGGAGGAGGAAGGAGGGATCGGGGGATCCATGGCGGACACCGGCGGACGGCCGGAGGTGTCGCTGGCCACGGTCCGGTCGCCGGGCCACCCGGCAGCTTCTACGACGGCAGCGGCGGCGGCGGATCTCGGCCACGCTGACACCGGGCAAGAGAAGCCCACCGTCGAGCGCCCAACCGGCGAACGGTGCCGCTCCGATGGGCGAGTGCGGCACGGAGTACAGGGGCCTCCCCGACGGCGACGCCGGCGGGCCAATGCCGTCGTCGGCACGCACGGTTTCGATGATCCCTGCCCTTTGTACACACCGCCCGTCGCTGAAAAGATAGAAAAGAGAGAAAAAAGGAAAAAGAAGACAGACATAGAATAAGAATAATAGAATATAAATAGCAGAGGAGTAAACAGATAGAGAAGTGAAAGAAGATGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2445#0 ------------------------------------------------------------ consensus_2445#1 GCGCTTTATGCTCACGCTGGTGATAATTTGTAAACTGGAAAGCGACGTACTGCCACTATT 60 consensus_2445#0 --------------------------------------CGTAATAATAATCAGGTTGAGC 22 consensus_2445#1 TATGCTGGATGCGCGCTTCCACTCCGCACGGCCGGAGGCGTAATAATAATCAGGTTGAGC 120 ********************** consensus_2445#0 TCCAGCATCCGGGGCACGGGGAGGAGGAAGGAGGGATCGGGGGATCCATGGCGGACACCG 82 consensus_2445#1 TCCAGCATCCGGGGCACGGGGAGGAGGAAGGAGGGATCGGGGGATCCATGGCGGACACCG 180 ************************************************************ consensus_2445#0 GCGGACGGCCGGAGGTGTCGCTGGCCACGGTCCGGTCGCCGGGCCACCCGGCAGCTTCTA 142 consensus_2445#1 GCGGACGGCCGGAGGTGTCGCTGGCCACGGTCCGGTCGCCGGGCCACCCGGCAGCTTCTA 240 ************************************************************ consensus_2445#0 CGACGGCAGCGGCGGCGGCGGATCTCGGCCACGCTGACACCGGGCAAGAGAAGCCCACCG 202 consensus_2445#1 CGACGGCAGCGGCGGCGGCGGATCTCGGCCACGCTGACACCGGGCAAGAGAAGCCCACCG 300 ************************************************************ consensus_2445#0 TCGAGAGCGCCCAACCGGCGAACGGTGCCGCTCCGATGGGCGAGTGCGGCACGGAGTACA 262 consensus_2445#1 TCGA--GCGCCCAACCGGCGAACGGTGCCGCTCCGATGGGCGAGTGCGGCACGGAGTACA 358 **** ****************************************************** consensus_2445#0 GGGGCCTCCCCGACGGCGACGCCGGCGGGCCAATGCCGTCGTCGGCACGCACGGTTTCGA 322 consensus_2445#1 GGGGCCTCCCCGACGGCGACGCCGGCGGGCCAATGCCGTCGTCGGCACGCACGGTTTCGA 418 ************************************************************ consensus_2445#0 TGATCCC-GCTCATCTTCCTCATCTTCTACGAGGTGTCCGGCGGGCCGTTCGGGATCGAG 381 consensus_2445#1 TGATCCCTGCCCTTTGTACACACCGCCC-----GTCGCTGAAAAGATAGAAAAGAGAGAA 473 ******* ** * * * * ** * * ** * * * ** ** consensus_2445#0 GACAGCGTGGGCGCGGCCGGGCCGCTGCTCGCCATCATCGGCTTCTTGGTCCTCCCCGTC 441 consensus_2445#1 AAAAG-GAAAAAGAAGACAGACATAGAATAAGAATAATAGAATATAAATAGCAGAGGAGT 532 * ** * * * * * * * ** ** * * * consensus_2445#0 ATCTGGAGCATCCCGGAGGCGCTGATCACGGCGGAGCTGGGCGCCATGTTCCCGGAGAAC 501 consensus_2445#1 AAACAGA------TAGAGAAGTGAAAGAAGATGAAGA----------------------- 563 * ** *** * * * * * ** consensus_2445#0 GGCGGGTACGTCGTGTGGGTGGCGTCGGCGCTCGGCCCGTACTGGGGGTTCCAGCAAGGG 561 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 TGGATGAAGTGGTTGAGCGGCGTCATCGACAACGCGCTCTACCCCGTCCTCTTCTTGGAC 621 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 TACCTCAAGTCCGGCGTCCCGGCGCTCGGCGGAGGCGCGCCGAGGGCGTTCGCCGTCGTC 681 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 GGCCTGACGGCCGTGCTGACATTGCTGAATTACCGGGGGCTCACCGTCGTCGGATGGGTG 741 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 GCGATCTGCCTTGGCGTCTTCTCCCTCCTCCCTTTTTTCGTCATGGGGCTCATCGCGCTC 801 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 CCCAAGCTCCGGCCGGCGAGGTGGCTCGTGATCGACCTCCACAACGTCGATTGGAATCTG 861 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 TACCTGAACACTCTGTTCTGGAACCTCAACTACTGGGATTCGATCAGCACGTTGGCCGGC 921 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 GAGGTGAAGAATCCCGGCAAGACGCTGCCCAAGGCGCTGTTCTACGCGGTCATCTTCGTG 981 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 GTGGTCGCCTACCTGTACCCTCTCCTCGCCGGGACGGGAGCCGTGCCGCTGGACAGGGGG 1041 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 CAGTGGACAGACGGCTACTTCGCGGACATCGCGAAGCTGCTCGGCGGCGCGTGGCTGATG 1101 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 TGGTGGGTGCAGTCGGCGGCGGCGCTGTCGAACATGGGCATGTTCGTGGCGGAGATGAGC 1161 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 AGCGACTCGTACCAGCTGCTGGGCATGGCGGAGCGGGGCATGCTCCCGTCCTTCTTCGCG 1221 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 GCGCGGTCGCGGTACGGCACGCCGCTGGCGGGCATCCTCTTCTCGGCCTCCGGCGTGCTG 1281 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 CTGCTCTCGATGATGAGCTTCCAGGAGATCGTGGCGGCCGAGAACTTCCTCTACTGCTTC 1341 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 GGCATGCTCCTCGAGTTCGTCGCCTTCATCCTGCACCGGGTGAGGCGCCCCGACGCGGCG 1401 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 CGCCCATACAGGGTGCCGCTGGGCACAGCCGGGTGCGTGGCGATGCTGGTGCCGCCGACG 1461 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 GCGCTGATCGCCGTGGTGCTCGCGCTGTCCACGCTGAAGGTGGCGGTGGTGAGCCTCGGC 1521 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 GCGGTGGCCATGGGGCTCGTGCTGCAGCCGGCGCTGAGGTTCGTGGAGAAGAAGCGGTGG 1581 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 CTGAGGTTCTCCGTTAACCCGGATCTCCCGGAGATCGGCGTGATTCGCCCGCCCGCCGCG 1641 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 CCGGACGAGCCGTTGGTTCCGTAGGACGCCCAGAAATCAGTTAGGCCCTGGAACTGGAAA 1701 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 ATGGACAATTTGGATTGCAGTCCAACTATAGGGAGAAAATAGAAGTCCTGCAGAATCATG 1761 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 TATACGTTGCAACAAAAAGAATTTAATCCAACGAAATCCACTGAAATCAACGGAAGCACT 1821 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 ATTCTGTTGGAATTTTGGAGAAATTTTTCCATGAGTTCAAAGCTCTTTCTTTGTTTTGAA 1881 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 TGAAGACTGTGAGTTCAAACCTCGTCTTCACATCTTATTGCTGCTCATGCAATCCCGTGC 1941 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 TTGTCATGTATTGCATTAAGGCATTTTTTTTACAGGAATCATGGCACCTTAGTTACATGT 2001 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 GTTGTAAACTTTCAATTTGTGTTTTTTTTACCTTTTTCATTTAGGATTTAAAAAGGTGGT 2061 consensus_2445#1 ------------------------------------------------------------ consensus_2445#0 GCACTAATATTAAT 2075 consensus_2445#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||