Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2452 cluster # 2452       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2452#0 length = 2486 sequences # 2  

consensusID : consensus_2452#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2486
fasta sequence
                              [ATTATCCATAGCCAAAATAGCCCTGGCTAAATCACATGCCGTCCCCCTTCCTCCCTTCCCACCCGCCGTGCTCCCCGGACGCCGCCGCACTTGTTAGGAATCAAGGGAACTCACGCGAACACAGTGGACACAAATCACACTTACACGTGAAGAGCACAAGAAAGAAGAACACAGCACATTGAGTATTTTGTGGCACAAGCACGCAACTAGTGCCTTTTCTCTTGCTAATTTTATTCACACTTAAACAAATGATTACAATGAGCAGCTATTTATAACCCTCGCATACTACTAATCGCATATACACACACGAAGCTGGTTGTTCCGATTCTCAAGCTACACACGACGCCCACGTCCGGTTTACTTGGTCACAACTCCACAAGTATCGCAACTGCTTGACTCAGTCCGCATCTCCACTACTGAGTCCTCGCCGACGTCGTTGCTCACACCAACCAACTAACCTGCAACTAACTAATACATGCAAGACTAATTCACCACATAATCCTGAGACTAATCCTAATCTGCACGCACGCACTACTTGGCTGGCAATCTACTTTAAGCACTCCACCACATTTTGTGCTTCACGGGAGATTAGCTCTATAATGCCACAACCACTAATGTGTGCAGCTGACAACTTAATTAGTCTACTCCTACAACTAAATGTGATGCCATGCAACAAAATAAACATGATCACCTAGTACAACAAGATTATTTCTAACAGCACTCATCCCCTTCCTTATCTGCCGCCACACCAGAGCTGGGTTCGTAGGCAGCCAACTCCGCCGCGCCGCACCCCTCTACTCCATCTTCCTCCGCGCCATCCCCTTCCCGTCGTCTTTCCGCCGCCGGCGACTCTCCGATTCGCTCGCGGCCGGAGTAGCGGTTCGGCGGCTCCCTCCCTCCCTCTCTACTAAGGTGAGATTTGCAACGAGAAAGATCGTTTGGCTTCGCTAGGCTCCTTCCTGCCTCCGATGGGATATATTTTTTTTTATTCGCTCCGATGGGAAGTTTTAGTCCAAAACGAACACAAATAAATGCAACCGGTGGTCTATCTCTAACCCTAACCCAAATATGCGGGAGACACCGATCTAGATAGATCTCCCAACAGTTGTTCGTGGTGGGGGAGAAGAAGAGCTAGGGCAATCCAATCAATCTTTAGTAAGATTCCTTAATTTGGGGGGCGATGAGTATTCGTCGGTTTGTTTATCTGGTGTTGGAGGAGTTTGCTCCCCGCCGCAGCAACTACACACTGCGCAACATAGACATGGAGCGCTTCTTCCTGCCACGTCCATCCCCGGTGCCATTCGTGGCGTCAGGCACCGACGCGGCGGAGTATGCGAGCCTGCCTTGCCCAGCCATGACCTTCTACCCTCCATTCTCCAAGTTGCCTGGGAAACAGCAGATGGAATTCTTGCTCCTTGGAGGCAATCATAACATGGTGGTCGCCGCCGACCAGACTTGCCGCACTGTCCTCTATGACCCCGGCGAGCACGCCGTCCGCACCTTGCCCGCCCTTCCCTACCAACTGGAATTGCCTACTGCTTCCGTCACTGTTGGGGACGACCTCTATATCCTTGACCATGTTGAGGTCGGAAACGTCCCCTGCTTCCATGGGCTCATTTACGAGGATAGATTAAATGAGGACTGGTGCTGCTGCGCTCTCCCGCCGCCGCCGCCACTGCTGTCCCACAAGTCTGACTTCCAAGTCGACTCCTATGCGGTGGTTGGTGACACGGACATCTGGATATCCACGCACGATAGTGGCATCTATTGCTTCAACACAGTGAGCCATGTGTGGAGCACAGTGGCCACCGGCTGGACCCTGCCATTTGTTGGTCTCGCCGAGTATTGCCAGGAGCACGGCCTTTGGTTTGGCCTCTCACACACTAGAGACAGGAGGAGCTTGGTCCTCTCCGCTTTGGACCTTGATAGCAGCCATCTGCCAGTGCTTCTCAGCCTTCCTCTGGAGTTCACGCCACCCGATGCCCTCAAGCTTGTCAGCTCATACCTTGTGAACCTAGGCTCTGCCAAGTTCTGCATCGCCAGGTTATTCCAGACTGATGAGGACCAGCGTGATGGCGAGGAGCTGTTTGCAGTGTTGACCGCCGTCGAGGTGGAACGCTGCGATGACGACGATGCTGGTGCCAATGGTGGAGGGCTCCGCATGCTGAAGCACAGGTCTGAGATGTACAAGCTCACCAGTGAAATGATGTATTGGGTGCTTTAGTCGTGTGGGACTTTAGTTATTGCCAAGGGCCTCAAATTACTGAACCAAAGCAATGATTTGAGGCCCTACTTTACTCTTCCTGAGCTAGATCAGGAAGGATAAAGGTTTTGTCATGTTCAATAGCAGGTCTGCTGTATCGACACAATAATACGATAAAATGGTTTTAAAGGGAATCATATGAATATGTGTCCGATCTTTTGAGTTGTGTCGTTGTTGTTATTTGTAATCATTTTGTGATCAGATATGGCAATAAATTTATTTC]

[-] EMBL AK110800             [ATTATCCATAGCCAAAATAGCCCTGGCTAAATCACATGCCGTCCCCCTTCCTCCCTTCCCACCCGCCGTGCTCCCCGGACGCCGCCGCACTTGTTAGGAATCAAGGGAACTCACGCGAACACAGTGGACACAAATCACACTTACACGTGAAGAGCACAAGAAAGAAGAACACAGCACATTGAGTATTTTGTGGCACAAGCACGCAACTAGTGCCTTTTCTCTTGCTAATTTTATTCACACTTAAACAAATGATTACAATGAGCAGCTATTTATAACCCTCGCATACTACTAATCGCATATACACACACGAAGCTGGTTGTTCCGATTCTCAAGCTACACACGACGCCCACGTCCGGTTTACTTGGTCACAACTCCACAAGTATCGCAACTGCTTGACTCAGTCCGCATCTCCACTACTGAGTCCTCGCCGACGTCGTTGCTCACACCAACCAACTAACCTGCAACTAACTAATACATGCAAGACTAATTCACCACATAATCCTGAGACTAATCCTAATCTGCACGCACGCACTACTTGGCTGGCAATCTACTTTAAGCACTCCACCACATTTTGTGCTTCACGGGAGATTAGCTCTATAATGCCACAACCACTAATGTGTGCAGCTGACAACTTAATTAGTCTACTCCTACAACTAAATGTGATGCCATGCAACAAAATAAACATGATCACCTAGTACAACAAGATTATTTCTAACAGCACTCATCCCCTTCCTTATCTGCCGCCACACCAGAGCTGGGTTCGTAGGCAGCCAACTCCGCCGCGCCGCACCCCTCTACTCCATCTTCCTCCGCGCCATCCCCTTCCCGTCGTCTTTCCGCCGCCGGCGACTCTCCGATTCGCTCGCGGCCGGAGTAGCGGTTCGGCGGCTCCCTCCCTCCCTCTCTACTAAGGTGAGATTTGCAACGAGAAAGATCGTTTGGCTTCGCTAGGCTCCTTCCTGCCTCCGATGGGATATATTTTTTTTTATTCGCTCCGATGGGAAGTTTTAGTCCAAAACGAACACAAATAAATGCAACCGGTGGTCTATCTCTAACCCTAACCCAAATATGCGGGAGACACCGATCTAGATAGATCTCCCAACAGTTGTTCGTGGTGGGGGAGAAGAAGAGCTAGGGCAATCCAATCAATCTTTAGTAAGATTCCTTAATTTGGGGGGCGATGAGTATTCGTCGGTTTGTTTATCTGGTGTTGGAGGAGTTTGCTCCCCGCCGCAGCAACTACACACTGCGCAACATAGACATGGAGCGCTTCTTCCTGCCACGTCCATCCCCGGTGCCATTCGTGGCGTCAGGCACCGACGCGGCGGAGTATGCGAGCCTGCCTTGCCCAGCCATGACCTTCTACCCTCCATTCTCCAAGTTGCCTGGGAAACAGCAGATGGAATTCTTGCTCCTTGGAGGCAATCATAACATGGTGGTCGCCGCCGACCAGACTTGCCGCACTGTCCTCTATGACCCCGGCGAGCACGCCGTCCGCACCTTGCCCGCCCTTCCCTACCAACTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK068189             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCAACTCCGCCGCGCCGCACCCCTCTACTCCATCTTCCTCCGCGCCATCCCCTTCCCGTCGTCTTTCCGCCGCCGGCGACTCTCCGATTCGCTCGCGGCCGGAGTAGCGGTTCGGCGGCTCCCTCCCTCCCTCTCTACTAAGGTGAGATTTGCAACGAGAAAGATCGTTTGGCTTCGCTAGGCTCCTTCCTGCCTCCGATGGGATATATTTTTTTTTATTCGCTCCGATGGGAAGTTTTAGTCCAAAACGAACACAAATAAATGCAACCGGTGGTCTATCTCTAACCCTAACCCAAATATGCGGGAGACACCGATCTAGATAGATCTCCCAACAGTTGTTCGTGGTGGGGGAGAAGAAGAGCTAGGGCAATCCAATCAATCTTTAGTAAGATTCCTTAATTTGGGGGGCGATGAGTATTCGTCGGTTTGTTTATCTGGTGTTGGAGGAGTTTGCTCCCCGCCGCAGCAACTACACACTGCGCAACATAGACATGGAGCGCTTCTTCCTGCCACGTCCATCCCCGGTGCCATTCGTGGCGTCAGGCACCGACGCGGCGGAGTATGCGAGCCTGCCTTGCCCAGCCATGACCTTCTACCCTCCATTCTCCAAGTTGCCTGGGAAACAGCAGATGGAATTCTTGCTCCTTGGAGGCAATCATAACATGGTGGTCGCCGCCGACCAGACTTGCCGCACTGTCCTCTATGACCCCGGCGAGCACGCCGTCCGCACCTTGCCCGCCCTTCCCTACCAACTGGAATTGCCTACTGCTTCCGTCACTGTTGGGGACGACCTCTATATCCTTGACCATGTTGAGGTCGGAAACGTCCCCTGCTTCCATGGGCTCATTTACGAGGATAGATTAAATGAGGACTGGTGCTGCTGCGCTCTCCCGCCGCCGCCGCCACTGCTGTCCCACAAGTCTGACTTCCAAGTCGACTCCTATGCGGTGGTTGGTGACACGGACATCTGGATATCCACGCACGATAGTGGCATCTATTGCTTCAACACAGTGAGCCATGTGTGGAGCACAGTGGCCACCGGCTGGACCCTGCCATTTGTTGGTCTCGCCGAGTATTGCCAGGAGCACGGCCTTTGGTTTGGCCTCTCACACACTAGAGACAGGAGGAGCTTGGTCCTCTCCGCTTTGGACCTTGATAGCAGCCATCTGCCAGTGCTTCTCAGCCTTCCTCTGGAGTTCACGCCACCCGATGCCCTCAAGCTTGTCAGCTCATACCTTGTGAACCTAGGCTCTGCCAAGTTCTGCATCGCCAGGTTATTCCAGACTGATGAGGACCAGCGTGATGGCGAGGAGCTGTTTGCAGTGTTGACCGCCGTCGAGGTGGAACGCTGCGATGACGACGATGCTGGTGCCAATGGTGGAGGGCTCCGCATGCTGAAGCACAGGTCTGAGATGTACAAGCTCACCAGTGAAATGATGTATTGGGTGCTTTAGTCGTGTGGGACTTTAGTTATTGCCAAGGGCCTCAAATTACTGAACCAAAGCAATGATTTGAGGCCCTACTTTACTCTTCCTGAGCTAGATCAGGAAGGATAAAGGTTTTGTCATGTTCAATAGCAGGTCTGCTGTATCGACACAATAATACGATAAAATGGTTTTAAAGGGAATCATATGAATATGTGTCCGATCTTTTGAGTTGTGTCGTTGTTGTTATTTGTAATCATTTTGTGATCAGATATGGCAATAAATTTATTTC]


>consensus_2452#0 ATTATCCATAGCCAAAATAGCCCTGGCTAAATCACATGCCGTCCCCCTTCCTCCCTTCCC ACCCGCCGTGCTCCCCGGACGCCGCCGCACTTGTTAGGAATCAAGGGAACTCACGCGAAC ACAGTGGACACAAATCACACTTACACGTGAAGAGCACAAGAAAGAAGAACACAGCACATT GAGTATTTTGTGGCACAAGCACGCAACTAGTGCCTTTTCTCTTGCTAATTTTATTCACAC TTAAACAAATGATTACAATGAGCAGCTATTTATAACCCTCGCATACTACTAATCGCATAT ACACACACGAAGCTGGTTGTTCCGATTCTCAAGCTACACACGACGCCCACGTCCGGTTTA CTTGGTCACAACTCCACAAGTATCGCAACTGCTTGACTCAGTCCGCATCTCCACTACTGA GTCCTCGCCGACGTCGTTGCTCACACCAACCAACTAACCTGCAACTAACTAATACATGCA AGACTAATTCACCACATAATCCTGAGACTAATCCTAATCTGCACGCACGCACTACTTGGC TGGCAATCTACTTTAAGCACTCCACCACATTTTGTGCTTCACGGGAGATTAGCTCTATAA TGCCACAACCACTAATGTGTGCAGCTGACAACTTAATTAGTCTACTCCTACAACTAAATG TGATGCCATGCAACAAAATAAACATGATCACCTAGTACAACAAGATTATTTCTAACAGCA CTCATCCCCTTCCTTATCTGCCGCCACACCAGAGCTGGGTTCGTAGGCAGCCAACTCCGC CGCGCCGCACCCCTCTACTCCATCTTCCTCCGCGCCATCCCCTTCCCGTCGTCTTTCCGC CGCCGGCGACTCTCCGATTCGCTCGCGGCCGGAGTAGCGGTTCGGCGGCTCCCTCCCTCC CTCTCTACTAAGGTGAGATTTGCAACGAGAAAGATCGTTTGGCTTCGCTAGGCTCCTTCC TGCCTCCGATGGGATATATTTTTTTTTATTCGCTCCGATGGGAAGTTTTAGTCCAAAACG AACACAAATAAATGCAACCGGTGGTCTATCTCTAACCCTAACCCAAATATGCGGGAGACA CCGATCTAGATAGATCTCCCAACAGTTGTTCGTGGTGGGGGAGAAGAAGAGCTAGGGCAA TCCAATCAATCTTTAGTAAGATTCCTTAATTTGGGGGGCGATGAGTATTCGTCGGTTTGT TTATCTGGTGTTGGAGGAGTTTGCTCCCCGCCGCAGCAACTACACACTGCGCAACATAGA CATGGAGCGCTTCTTCCTGCCACGTCCATCCCCGGTGCCATTCGTGGCGTCAGGCACCGA CGCGGCGGAGTATGCGAGCCTGCCTTGCCCAGCCATGACCTTCTACCCTCCATTCTCCAA GTTGCCTGGGAAACAGCAGATGGAATTCTTGCTCCTTGGAGGCAATCATAACATGGTGGT CGCCGCCGACCAGACTTGCCGCACTGTCCTCTATGACCCCGGCGAGCACGCCGTCCGCAC CTTGCCCGCCCTTCCCTACCAACTGGAATTGCCTACTGCTTCCGTCACTGTTGGGGACGA CCTCTATATCCTTGACCATGTTGAGGTCGGAAACGTCCCCTGCTTCCATGGGCTCATTTA CGAGGATAGATTAAATGAGGACTGGTGCTGCTGCGCTCTCCCGCCGCCGCCGCCACTGCT GTCCCACAAGTCTGACTTCCAAGTCGACTCCTATGCGGTGGTTGGTGACACGGACATCTG GATATCCACGCACGATAGTGGCATCTATTGCTTCAACACAGTGAGCCATGTGTGGAGCAC AGTGGCCACCGGCTGGACCCTGCCATTTGTTGGTCTCGCCGAGTATTGCCAGGAGCACGG CCTTTGGTTTGGCCTCTCACACACTAGAGACAGGAGGAGCTTGGTCCTCTCCGCTTTGGA CCTTGATAGCAGCCATCTGCCAGTGCTTCTCAGCCTTCCTCTGGAGTTCACGCCACCCGA TGCCCTCAAGCTTGTCAGCTCATACCTTGTGAACCTAGGCTCTGCCAAGTTCTGCATCGC CAGGTTATTCCAGACTGATGAGGACCAGCGTGATGGCGAGGAGCTGTTTGCAGTGTTGAC CGCCGTCGAGGTGGAACGCTGCGATGACGACGATGCTGGTGCCAATGGTGGAGGGCTCCG CATGCTGAAGCACAGGTCTGAGATGTACAAGCTCACCAGTGAAATGATGTATTGGGTGCT TTAGTCGTGTGGGACTTTAGTTATTGCCAAGGGCCTCAAATTACTGAACCAAAGCAATGA TTTGAGGCCCTACTTTACTCTTCCTGAGCTAGATCAGGAAGGATAAAGGTTTTGTCATGT TCAATAGCAGGTCTGCTGTATCGACACAATAATACGATAAAATGGTTTTAAAGGGAATCA TATGAATATGTGTCCGATCTTTTGAGTTGTGTCGTTGTTGTTATTTGTAATCATTTTGTG ATCAGATATGGCAATAAATTTATTTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)