These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [CGGTACGCCCCGCCCGCTCGTGCCCTCGCACAGCCCGTGGAAGGGTTTTCCCAAAAATCGTCCTCCAAAATCGCGGCAACAAATCAACGAATCGACAGCAGCCGTCCTCCTGCTTCTCNTCCTCTTCCTTGCGGCGGCGGCGGCGGCGGCTGTCGCACGAGCAGGTGGCAGCCGGTGCCGCGCGGCTCCTCCGCGGGGTCCGGAGGCGTGGAAGGAGCAAGCGGCGTGGGCGGCGCGGCTCCTCCGGAGGCCGTCGTCGAAGAAGAGAGCGCCACCTCGCCAATGCANGCACCCCAACCCGGTGCTCACCTCGNCTGCTTCTTCCTCACCGCCCGTTCT] [+] EMBL AU075999 [CGGTACGCCCCGCCCGCTCGTGCCCTCGCACAGCCCGTGGAAGGGTTTTCCCAAAAATCGTCCTCCAAAATCGCGGCAACAAATCAACGAATCGACAGCAGCCGTCCTCCTGCTTCTCNTCCTCTTCCTTGCGGCGGCGGCGGCGGCGGCTGTCGCACGAGCAGGTGGCAGCCGGTGCCGCGCGGCTCCTCCGCGGGGTCCGGAGGCGTGGAAGGAGCAAGCGGCGTGGGCGGCGCGGCTCCTCCGGAGGCCGTCGTCGAAGAAGAGAGCGCCACCTCGCCAATGCANGCACCCCAACCCGGTGCTCACCTCGNCTGCTTCTTCCTCACCGCCCGTTCT] consensusID : consensus_2453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence [GCCGCTATTTGTTGCCGCGATTTTGGAGGACNATTTTTGGGAAAACCCTTCCACNGGCTNTGCNAGGGCACNANCGGGCGGGGCGACCCGCTCCACAGCGTATAAAATCCGCANTTTCCTCGCCTCGCNTGGGCTCGCGGCAGGGANGAATCNCCCTTCCCTGCGTGGGANCNANGTCTCTGCTGGGGCGCGGACCCTTATCNCCACNCAANCCCTAATCCN] [+] EMBL AU225298 [GCCGCTATTTGTTGCCGCGATTTTGGAGGACNATTTTTGGGAAAACCCTTCCACNGGCTNTGCNAGGGCACNANCGGGCGGGGCGACCCGCTCCACAGCGTATAAAATCCGCANTTTCCTCGCCTCGCNTGGGCTCGCGGCAGGGANGAATCNCCCTTCCCTGCGTGGGANCNANGTCTCTGCTGGGGCGCGGACCCTTATCNCCACNCAANCCCTAATCCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2453#0 CGGTACGCCCCGCCCGCTCGTGCCCTCGCACAGCCCGTGGAAGGGTTTTCCCAAAAATCG 60 consensus_2453#1 --------------------------------------------------------GCCG 4 ** consensus_2453#0 TCCTCCAAAATCGCGGCAACAAATCAACGAATCGACAGCAGCCGTCCTCCTGCTTCTCNT 120 consensus_2453#1 CTATTTGTTGCCGCGATTTTGGAGGACNATTTTTGGGAAAACCCTTCCACNGGCTNTGCN 64 * **** * * * * ** * * * * * * consensus_2453#0 CCTCTTCCTTGCGGCGGCGGCGGCGGCGGCTGTCGCACGAGCAGGTGGCAGCCGGTGCCG 180 consensus_2453#1 AGGGCACNANCGGGCGG----GGCGAC--CCGCTCCAC-AGCGTATAAAATCCG------ 111 * ***** **** * * * *** *** * * *** consensus_2453#0 CGCGGCTCCTCCGCGGGGTCCGGAGGCGTGG-AAGGAGCAAGCGGCGTGGGCGGCGCGGC 239 consensus_2453#1 --CANTTTCCTCGCCTCGCNTGGGCTCGCGGCAGGGANGAATCNCCCTTCCCTGCGTGGG 169 * * * *** * ** ** ** * *** ** * * * * *** ** consensus_2453#0 TCCTCCGGAGGCCGTCGTCGAAGAAGAGAGCGCCACCTCGCCAATGCANGCACCCCAACC 299 consensus_2453#1 ANCN----ANGTCTCTGCTG-----GGGCGCGGACCCTTATCNCCACNCAANCCCTAATC 220 * * * * * * * * *** *** * * *** ** * consensus_2453#0 CGGTGCTCACCTCGNCTGCTTCTTCCTCACCGCCCGTTCT 339 consensus_2453#1 CN-------------------------------------- 222 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||