These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1561 fasta sequence [TACTGGTGCCTGGTAGTAACCAGACACAGAGGGAAAGCAAAACAAGAGTGGGTGTCTCCTGTTGTCTGTCTTCCTCCTCGTTTGAGCTCCAAGCAAGCTTAGCCAAGAAACACCATAAAGAAGAGAGTGAGAGAGAGTGTGTGTGTGAGAGGAGGTGAGCTTCTCTCACATGCACATGGAGGGAGGGGAGGGCATTGCTGTAGCAGGTGCAGGTGGTGGCCATGAAGCCGGCTTCGGTTTGTTCAGAGCGGCCGATGTGGCCATGACAGAGGCGCAAGAAGCAGCCAAGGAGTACCAGTCTTCTCCCTCCTCGCCGTCGACGTCTCCTACTCCTTCCCCGCCGCCGGTTGCTGCCTCCGGCCATGGAGGGGAGGCCGCTGCAACGCCGACCATGTGGAGTTTGGGCGGCGAGAAGATGCCGAGTGAGGCTGCAGGGGACAACGGCATGCAGATGTCAGGCCACAGTGAGCATGCTAGCTTGAGCTCCGGACGGCGTAGGGGCCGGCCAAAAGGGTCCGGGAGACGCCAGATCCTAGCCACTCTAGGGGAATGGTATGCGCTATCAGCTGGAGGGAGCTTCACCCCTCATGTCATCATCGTAGGCACAGGGGAGGATGTGGCGGGGCGCATAATGTCCTTCTCTCAGAAGGGTCCACGCTCGATTTGCATCCTCTCTGCCAATGGGACCATCTCCAATGTGGCATTGAGCCAGCCTGGCTCGTCCGGTAGCACCTTCACCTACGAGGGTCGGTTTGAGATTCTGCAACTGACTGGCTCCTTTACAATGGCGGAAGAAGGTGGTCGGAGGAGAACTGGTGGGCTCAGTGTATCGCTTGCCGGTCCTGATGGCCGTGTCGTTGGTGGTGTAGTAGCTGGGATGCTGCGTGCCGCAAGCCCTATTCAGGTGATTGTGGGGAGCTTCCTGCCCAACAGCCTAAAGCAGCATCAGAGGAGGATGGGCCTACAACAGCAACCATCTGCTGCCCCGGCACTACCACCGCCTATGGCTCCACCTCCTGTGCTCACAGCTGCAATGCCTATCTCTCAGGCAGCTCCTGGAACTAATGGTTGCCATGCGCCGCAGGTCTCATCTATGCATCCGCAAGCCCACACCGGTGTAATGGAGCACATTGCAACAGCCAGTGGCGCCATGAACCTTAACAGCTCAAGCTCCACAGGTTTCACCATGGTTGGGTGGCCAGTCAGCTCACAGTCCATGGGGCACAGGCCTTCACCTGACATCAATGTCTGCTTAACTCCTCAGGAGTAGCATCAGCTATTGAGCTATCATCTTTTGTCACCCCCATCCCTGACACATTTTGTAGGGCATGGCTGTTAATCTTTGCCATGTGCGATGACAAATTATGGGCTCTATTCTAATCCATTAGGTCTGCGGTTTAATTTTGGGGGGAGAAACTAGGCAAGACTAAGGACAATTTAGCCAGAATCTGACAGAATGTGATAGTCTATTAGTTGCAGTTGCCCTCATCTAATTGTTAGGATATGTCATTGTGTTGGGACATCTGGTTTGTGATTCAGATTTCATTCTCGCTGTTGCTGG] [+] EMBL AK102958 [TACTGGTGCCTGGTAGTAACCAGACACAGAGGGAAAGCAAAACAAGAGTGGGTGTCTCCTGTTGTCTGTCTTCCTCCTCGTTTGAGCTCCAAGCAAGCTTAGCCAAGAAACACCATAAAGAAGAGAGTGAGAGAGAGTGTGTGTGTGAGAGGAGGTGAGCTTCTCTCACATGCACATGGAGGGAGGGGAGGGCATTGCTGTAGCAGGTGCAGGTGGTGGCCATGAAGCCGGCTTCGGTTTGTTCAGAGCGGCCGATGTGGCCATGACAGAGGCGCAAGAAGCAGCCAAGGAGTACCAGTCTTCTCCCTCCTCGCCGTCGACGTCTCCTACTCCTTCCCCGCCGCCGGTTGCTGCCTCCGGCCATGGAGGGGAGGCCGCTGCAACGCCGACCATGTGGAGTTTGGGCGGCGAGAAGATGCCGAGTGAGGCTGCAGGGGACAACGGCATGCAGATGTCAGGCCACAGTGAGCATGCTAGCTTGAGCTCCGGACGGCGTAGGGGCCGGCCAAAAGGGTCCGGGAGACGCCAGATCCTAGCCACTCTAGGGGAATGGTATGCGCTATCAGCTGGAGGGAGCTTCACCCCTCATGTCATCATCGTAGGCACAGGGGAGGATGTGGCGGGGCGCATAATGTCCTTCTCTCAGAAGGGTCCACGCTCGATTTGCATCCTCTCTGCCAATGGGACCATCTCCAATGTGGCATTGAGCCAGCCTGGCTCGTCCGGTAGCACCTTCACCTACGAGGGTCGGTTTGAGATTCTGCAACTGACTGGCTCCTTTACAATGGCGGAAGAAGGTGGTCGGAGGAGAACTGGTGGGCTCAGTGTATCGCTTGCCGGTCCTGATGGCCGTGTCGTTGGTGGTGTAGTAGCTGGGATGCTGCGTGCCGCAAGCCCTATTCAGGTGATTGTGGGGAGCTTCCTGCCCAACAGCCTAAAGCAGCATCAGAGGAGGATGGGCCTACAACAGCAACCATCTGCTGCCCCGGCACTACCACCGCCTATGGCTCCACCTCCTGTGCTCACAGCTGCAATGCCTATCTCTCAGGCAGCTCCTGGAACTAATGGTTGCCATGCGCCGCAGGTCTCATCTATGCATCCGCAAGCCCACACCGGTGTAATGGAGCACATTGCAACAGCCAGTGGCGCCATGAACCTTAACAGCTCAAGCTCCACAGGTTTCACCATGGTTGGGTGGCCAGTCAGCTCACAGTCCATGGGGCACAGGCCTTCACCTGACATCAATGTCTGCTTAACTCCTCAGGAGTAGCATCAGCTATTGAGCTATCATCTTTTGTCACCCCCATCCCTGACACATTTTGTAGGGCATGGCTGTTAATCTTTGCCATGTGCGATGACAAATTATGGGCTCTATTCTAATCCATTAGGTCTGCGGTTTAATTTTGGGGGGAGAAACTAGGCAAGACTAAGGACAATTTAGCCAGAATCTGACAGAATGTGATAGTCTATTAGTTGCAGTTGCCCTCATCTAATTGTTAGGATATGTCATTGTGTTGGGACATCTGGTTTGTGATTCAGATTTCATTCTCGCTGTTGCTGG] consensusID : consensus_2462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 355 fasta sequence [CATTTCTCAGGCAGCTCNTGGCAACAATGGCTGCCGTTCGCCGCAGGTTTCGATCTCATCCATGCCTCCACAAGCACATGCCGGTNTGGAGCAGAGTAGAGGCGCCATGAACCTGAATTCATCGAGCTCCAGTACTGGTTTCGCCATGGTTGGGTGGCCTGCAGCTGCAAGCTCGCAGTCCATGGTGCACAGGCCTTCACCTGACATCAATGTCTGCTTGACTCCTCAAGAGTAGGATCAATTTGTCCTATTTTTTTGTTGCCCTCGTGCCTGACATGCGTTGTTGTGGCATGGCTGTCACGTGACATGTGTTTGGGTTCAATTCTATCTAATCACGTGTCTTGAGTAAAAAAAA] [+] EMBL AU068541 [CATTTCTCAGGCAGCTCNTGGCAACAATGGCTGCCGTTCGCCGCAGGTTTCGATCTCATCCATGCCTCCACAAGCACATGCCGGTNTGGAGCAGAGTAGAGGCGCCATGAACCTGAATTCATCGAGCTCCAGTACTGGTTTCGCCATGGTTGGGTGGCCTGCAGCTGCAAGCTCGCAGTCCATGGTGCACAGGCCTTCACCTGACATCAATGTCTGCTTGACTCCTCAAGAGTAGGATCAATTTGTCCTATTTTTTTGTTGCCCTCGTGCCTGACATGCGTTGTTGTGGCATGGCTGTCACGTGACATGTGTTTGGGTTCAATTCTATCTAATCACGTGTCTTGAGTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2462#0 TACTGGTGCCTGGTAGTAACCAGACACAGAGGGAAAGCAAAACAAGAGTGGGTGTCTCCT 60 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 GTTGTCTGTCTTCCTCCTCGTTTGAGCTCCAAGCAAGCTTAGCCAAGAAACACCATAAAG 120 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 AAGAGAGTGAGAGAGAGTGTGTGTGTGAGAGGAGGTGAGCTTCTCTCACATGCACATGGA 180 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 GGGAGGGGAGGGCATTGCTGTAGCAGGTGCAGGTGGTGGCCATGAAGCCGGCTTCGGTTT 240 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 GTTCAGAGCGGCCGATGTGGCCATGACAGAGGCGCAAGAAGCAGCCAAGGAGTACCAGTC 300 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 TTCTCCCTCCTCGCCGTCGACGTCTCCTACTCCTTCCCCGCCGCCGGTTGCTGCCTCCGG 360 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 CCATGGAGGGGAGGCCGCTGCAACGCCGACCATGTGGAGTTTGGGCGGCGAGAAGATGCC 420 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 GAGTGAGGCTGCAGGGGACAACGGCATGCAGATGTCAGGCCACAGTGAGCATGCTAGCTT 480 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 GAGCTCCGGACGGCGTAGGGGCCGGCCAAAAGGGTCCGGGAGACGCCAGATCCTAGCCAC 540 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 TCTAGGGGAATGGTATGCGCTATCAGCTGGAGGGAGCTTCACCCCTCATGTCATCATCGT 600 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 AGGCACAGGGGAGGATGTGGCGGGGCGCATAATGTCCTTCTCTCAGAAGGGTCCACGCTC 660 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 GATTTGCATCCTCTCTGCCAATGGGACCATCTCCAATGTGGCATTGAGCCAGCCTGGCTC 720 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 GTCCGGTAGCACCTTCACCTACGAGGGTCGGTTTGAGATTCTGCAACTGACTGGCTCCTT 780 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 TACAATGGCGGAAGAAGGTGGTCGGAGGAGAACTGGTGGGCTCAGTGTATCGCTTGCCGG 840 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 TCCTGATGGCCGTGTCGTTGGTGGTGTAGTAGCTGGGATGCTGCGTGCCGCAAGCCCTAT 900 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 TCAGGTGATTGTGGGGAGCTTCCTGCCCAACAGCCTAAAGCAGCATCAGAGGAGGATGGG 960 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 CCTACAACAGCAACCATCTGCTGCCCCGGCACTACCACCGCCTATGGCTCCACCTCCTGT 1020 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 GCTCACAGCTGCAATGCCTATCTCTCAGGCAGCTCCTGGAACTAATGGTTGCCATGCGCC 1080 consensus_2462#1 ------------------CATTTCTCAGGCAGCTCNTGGCAACAATGGCTGCCGTTCGCC 42 ** ************* *** * ***** **** * **** consensus_2462#0 GCAGGT------CTCATCTATGCATCCGCAAGCCCACACCGGTGTAATGGAGCACATTGC 1134 consensus_2462#1 GCAGGTTTCGATCTCATCCATGCCTCCACAAGCACATGCCGGTN---TGGAGCAGAGT-- 97 ****** ****** **** *** ***** ** ***** ******* * * consensus_2462#0 AACAGCCAGTGGCGCCATGAACCTTAACAGCTCAAGCTCCA---CAGGTTTCACCATGGT 1191 consensus_2462#1 -------AGAGGCGCCATGAACCTGAATTCATCGAGCTCCAGTACTGGTTTCGCCATGGT 150 ** ************** ** ** ******* * ****** ******* consensus_2462#0 TGGGTGGCCAGTC------AGCTCACAGTCCATGGGGCACAGGCCTTCACCTGACATCAA 1245 consensus_2462#1 TGGGTGGCCTGCAGCTGCAAGCTCGCAGTCCATGGTGCACAGGCCTTCACCTGACATCAA 210 ********* * ***** ********** ************************ consensus_2462#0 TGTCTGCTTAACTCCTCAGGAGTAGCATCAGCTATTGAGCTATCATCTTTTGTCACCCCC 1305 consensus_2462#1 TGTCTGCTTGACTCCTCAAGAGTAGGATCAAT--TTGTCCTAT--TTTTTTGTTGCCCTC 266 ********* ******** ****** **** *** **** * ****** *** * consensus_2462#0 ATCCCTGACACATTTTGTAG-GGCATGGCTGTTAATCTTTGCCATGTGCGATGACAAATT 1364 consensus_2462#1 GTGCCTGACATGCGTTGTTGTGGCATGGCTGTCA---CGTGACATGTG-----------T 312 * ******* **** * *********** * ** ****** * consensus_2462#0 ATGGGCTCTATTCTAATCCATTAGGTCTGCGGTTTAATTTTGGGGGGAGAAACTAGGCAA 1424 consensus_2462#1 TTGGGTTCAATTCTATCTAATCACGT----------GTCTTGAGTAAAAAAAA------- 355 **** ** ****** ** * ** * *** * * *** consensus_2462#0 GACTAAGGACAATTTAGCCAGAATCTGACAGAATGTGATAGTCTATTAGTTGCAGTTGCC 1484 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 CTCATCTAATTGTTAGGATATGTCATTGTGTTGGGACATCTGGTTTGTGATTCAGATTTC 1544 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 ATTCTCGCTGTTGCTGG 1561 consensus_2462#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||