These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence [CAGCTAACTAAGATTTACAAATACATGTGCATTTAACCCCATTTACATATAACAATGTTGGTACAAAGAATTATCTACAACAACTGCACGCATGAGTGCAAAAGTGATCATCTAGCACTCCTATGTTCTAGCCGGCTTCACCATCCGCATCTTCATCAGGACGCCATTCTAGTAAAGCTTGGTTCTGTGGCTTCTCATTGGAAGATCTAACATCAACTAGTCCTTCGATAGAGCAGTTAGACAGCTCTAACAACATTGCGCAAAACCCGCAGGAGCAAGATCTGCAAACTGTCCCATGGTTCAACGCAGAGTTAAACCTCCCTAAAGAATCCTTCAATTTCTTTATCTCCATAGATTGCTTCTGAGCTAGTTCATGTGATTCCTGCAGTTTCCTCAGGGCTCCACTCAATTTTCTCTGCTCTTTGGAAACCTGAGCCTCTAGTTCCTGGATTTGTTGGATAGCTGCCTGCTCAATGCAAGACCGACGCTTGTATTCTTCCTCAAGCATGCCAGTTATTTGGTACCTTAGTTCAGCCATTTCTTGGGTGAGATCTTCTGCATCCTCCTTTGCCTTCAGTTTTTGTTCTCGAAGCTCTTCCTTGAGCTGCTCAATCAGTAGTTCAGATTCTTCACTTCGCTTTGCCATATTTTCAAGTATTGCACCGCCCCTCTCATAGTATTGACCATCAATCTTCTCAATTGTTTTGTCAACTTGCTCATCAGATGTTAAAGCAGTGGC] [+] EMBL CB667445 [CAGCTAACTAAGATTTACAAATACATGTGCATTTAACCCCATTTACATATAACAATGTTGGTACAAAGAATTATCTACAACAACTGCACGCATGAGTGCAAAAGTGATCATCTAGCACTCCTATGTTCTAGCCGGCTTCACCATCCGCATCTTCATCAGGACGCCATTCTAGTAAAGCTTGGTTCTGTGGCTTCTCATTGGAAGATCTAACATCAACTAGTCCTTCGATAGAGCAGTTAGACAGCTCTAACAACATTGCGCAAAACCCGCAGGAGCAAGATCTGCAAACTGTCCCATGGTTCAACGCAGAGTTAAACCTCCCTAAAGAATCCTTCAATTTCTTTATCTCCATAGATTGCTTCTGAGCTAGTTCATGTGATTCCTGCAGTTTCCTCAGGGCTCCACTCAATTTTCTCTGCTCTTTGGAAACCTGAGCCTCTAGTTCCTGGATTTGTTGGATAGCTGCCTGCTCAATGCAAGACCGACGCTTGTATTCTTCCTCAAGCATGCCAGTTATTTGGTACCTTAGTTCAGCCATTTCTTGGGTGAGATCTTCTGCATCCTCCTTTGCCTTCAGTTTTTGTTCTCGAAGCTCTTCCTTGAGCTGCTCAATCAGTAGTTCAGATTCTTCACTTCGCTTTGCCATATTTTCAAGTATTGCACCGCCCCTCTCATAGTATTGACCATCAATCTTCTCAATTGTTTTGTCAACTTGCTCATCAGATGTTAAAGCAGTGGC] consensusID : consensus_2475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [TTTACAAATATCAATTTTGATACAAAAAATTATTTAAAAAAAGTGGACGCATGAAATGCAAAAGTGATCATCTAGCACTCCTATGTTCTATCCGGTTTCACCATCCGCATCTTCATCAAGACGCCATTCTAATAAAACTTGGTTCTGTGGCTTCTCATTGAAAAATCTAACATCAACTAGTCCTTCAATAAAACAATTAAACAGCTCTAACAACATTGCGCAAAACCCGCAAGAACAAAATCTGCAAACTGTCCCATGGTTCAACGCAAAATTAAACCTCCCTAAAAAATCCTTCAATTTCTTTATCTCCATAAATTGCTTCTGAACTAGTTCATGTGATTCCTGCAATTTCCTCAGGGCTCCACTCAATTTTCTCTGCTCTTTGAAAACCTGAACCTCTAATTCCTGGATTTGTTGGATAACTGCCTGCTCAATGCAAAACCAACGCTTGTATTCTTCCTCAAGCATGCCAATTATTTGGTACCTTATTTCAGCCATTTCTTGGGTGAAATCTTCTGCATCCTCCTTTGCCTTCAATTTTTGTTCTCAAAGCTCTTCCTTGAGCTGCTCAATCAGTAATTCAAATTCTTCACTTCGCTTTGCCATATTTTAAAATATTGCAC] [+] EMBL CB667444 [TTTACAAATATCAATTTTGATACAAAAAATTATTTAAAAAAAGTGGACGCATGAAATGCAAAAGTGATCATCTAGCACTCCTATGTTCTATCCGGTTTCACCATCCGCATCTTCATCAAGACGCCATTCTAATAAAACTTGGTTCTGTGGCTTCTCATTGAAAAATCTAACATCAACTAGTCCTTCAATAAAACAATTAAACAGCTCTAACAACATTGCGCAAAACCCGCAAGAACAAAATCTGCAAACTGTCCCATGGTTCAACGCAAAATTAAACCTCCCTAAAAAATCCTTCAATTTCTTTATCTCCATAAATTGCTTCTGAACTAGTTCATGTGATTCCTGCAATTTCCTCAGGGCTCCACTCAATTTTCTCTGCTCTTTGAAAACCTGAACCTCTAATTCCTGGATTTGTTGGATAACTGCCTGCTCAATGCAAAACCAACGCTTGTATTCTTCCTCAAGCATGCCAATTATTTGGTACCTTATTTCAGCCATTTCTTGGGTGAAATCTTCTGCATCCTCCTTTGCCTTCAATTTTTGTTCTCAAAGCTCTTCCTTGAGCTGCTCAATCAGTAATTCAAATTCTTCACTTCGCTTTGCCATATTTTAAAATATTGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2475#0 CAGCTAACTAAGATTTACAAATACATGTGCATTTAACCCCATTTACATATAACAATGTTG 60 consensus_2475#1 -----------------------------------------TTTACAAATATCAATTTTG 19 ****** *** **** *** consensus_2475#0 GTACAAAGAATTATCTACAACAACTGCACGCATGAG-TGCAAAAGTGATCATCTAGCACT 119 consensus_2475#1 ATACAAAAAATTATTTAAAAAAAGTGGACGCATGAAATGCAAAAGTGATCATCTAGCACT 79 ****** ****** ** ** ** ** ******** *********************** consensus_2475#0 CCTATGTTCTAGCCGGCTTCACCATCCGCATCTTCATCAGGACGCCATTCTAGTAAAGCT 179 consensus_2475#1 CCTATGTTCTATCCGGTTTCACCATCCGCATCTTCATCAAGACGCCATTCTAATAAAACT 139 *********** **** ********************** ************ **** ** consensus_2475#0 TGGTTCTGTGGCTTCTCATTGGAAGATCTAACATCAACTAGTCCTTCGATAGAGCAGTTA 239 consensus_2475#1 TGGTTCTGTGGCTTCTCATTGAAAAATCTAACATCAACTAGTCCTTCAATAAAACAATTA 199 ********************* ** ********************** *** * ** *** consensus_2475#0 GACAGCTCTAACAACATTGCGCAAAACCCGCAGGAGCAAGATCTGCAAACTGTCCCATGG 299 consensus_2475#1 AACAGCTCTAACAACATTGCGCAAAACCCGCAAGAACAAAATCTGCAAACTGTCCCATGG 259 ******************************* ** *** ******************** consensus_2475#0 TTCAACGCAGAGTTAAACCTCCCTAAAGAATCCTTCAATTTCTTTATCTCCATAGATTGC 359 consensus_2475#1 TTCAACGCAAAATTAAACCTCCCTAAAAAATCCTTCAATTTCTTTATCTCCATAAATTGC 319 ********* * *************** ************************** ***** consensus_2475#0 TTCTGAGCTAGTTCATGTGATTCCTGCAGTTTCCTCAGGGCTCCACTCAATTTTCTCTGC 419 consensus_2475#1 TTCTGAACTAGTTCATGTGATTCCTGCAATTTCCTCAGGGCTCCACTCAATTTTCTCTGC 379 ****** ********************* ******************************* consensus_2475#0 TCTTTGGAAACCTGAGCCTCTAGTTCCTGGATTTGTTGGATAGCTGCCTGCTCAATGCAA 479 consensus_2475#1 TCTTTGAAAACCTGAACCTCTAATTCCTGGATTTGTTGGATAACTGCCTGCTCAATGCAA 439 ****** ******** ****** ******************* ***************** consensus_2475#0 GACCGACGCTTGTATTCTTCCTCAAGCATGCCAGTTATTTGGTACCTTAGTTCAGCCATT 539 consensus_2475#1 AACCAACGCTTGTATTCTTCCTCAAGCATGCCAATTATTTGGTACCTTATTTCAGCCATT 499 *** **************************** *************** ********** consensus_2475#0 TCTTGGGTGAGATCTTCTGCATCCTCCTTTGCCTTCAGTTTTTGTTCTCGAAGCTCTTCC 599 consensus_2475#1 TCTTGGGTGAAATCTTCTGCATCCTCCTTTGCCTTCAATTTTTGTTCTCAAAGCTCTTCC 559 ********** ************************** *********** ********** consensus_2475#0 TTGAGCTGCTCAATCAGTAGTTCAGATTCTTCACTTCGCTTTGCCATATTTTCAAGTATT 659 consensus_2475#1 TTGAGCTGCTCAATCAGTAATTCAAATTCTTCACTTCGCTTTGCCATATTTTAAAATATT 619 ******************* **** *************************** ** **** consensus_2475#0 GCACCGCCCCTCTCATAGTATTGACCATCAATCTTCTCAATTGTTTTGTCAACTTGCTCA 719 consensus_2475#1 GCAC-------------------------------------------------------- 623 **** consensus_2475#0 TCAGATGTTAAAGCAGTGGC 739 consensus_2475#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||