These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2508#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 919 fasta sequence [GCTAGACATGGCGATGGGGAAGAATGGGTTGCTGGGGTGGCTGTGCGTCGTCGTGCCGGGGCGGCGGCGGCGGCGGCGAGGGGCGCGGCTGGTGCTGTGGGGAGGGGAGAGGCGGGCGGCGGCGGCCGGGAGGATGGCCGGGGAGGTGATGATGGAGCACGCGGGGCGCCTCGTGGTGTGCCGCGCCGACGGGTTCTGCCTCGGCCGCGCGGCCCCCGTGCTCGCCATCGAGGACCGCCTCGACGCTTGCGCCACCTACCTCGTCCTCCCCGTCGACCGCCTCCCCCAGGGCCGCGACGTCGTCACCGCCGCCTCGCTCGCCGCGCTCACCTACGACAGGGCCGCCGGCGCCCCGCTGCTGGCCGGTGGCGCGAAGAGCCCGTTCGAGTACGTCAAGGACGACGGCGGACGGACGGTGATCAAGGTCACGGAGGAGTTCATCGTCAAGGCCGTCACGGGGAGGCGGCCACCGGCTGGCGGCGGCGGCGAGGGGGAGGACGCGCATGGGGCGGCGGCGCTGTGCAGCACGCCGGAGCTGAGGAAGCACTACGAGCAGCTGGTGGGCGCGGCGAGGGGGCGGCCGTGGTCGCCGCGGCTGGAGACGATCAAGGAGCGGAATGGGCGGCGGAGGGTGGTCGACGTCGTCGTCAGCCCCACCGGCAGGCTGTCTCCGGTGAGGTTGCTCGGGTTGGACAAGGGAATCAAGTAGACATGCATGAAAATTTTCGTCTAATCCTCTCTTCTAATTGGCTGCTGCTAGTTTTGCTTTGAAGATTGAAGCGATTTTTGGTTGGAAATTTGGATTAGATGTACATATGTTTTGGATGGGTATCTCTTGTTTGTTTCTACAAGAATTTTGTACATCCAGACCGATCTCTGTTTGTAAGTAAGGTAAATGATTTACCGTCAAATGGCAAAC] [+] EMBL AK069789 [GCTAGACATGGCGATGGGGAAGAATGGGTTGCTGGGGTGGCTGTGCGTCGTCGTGCCGGGGCGGCGGCGGCGGCGGCGAGGGGCGCGGCTGGTGCTGTGGGGAGGGGAGAGGCGGGCGGCGGCGGCCGGGAGGATGGCCGGGGAGGTGATGATGGAGCACGCGGGGCGCCTCGTGGTGTGCCGCGCCGACGGGTTCTGCCTCGGCCGCGCGGCCCCCGTGCTCGCCATCGAGGACCGCCTCGACGCTTGCGCCACCTACCTCGTCCTCCCCGTCGACCGCCTCCCCCAGGGCCGCGACGTCGTCACCGCCGCCTCGCTCGCCGCGCTCACCTACGACAGGGCCGCCGGCGCCCCGCTGCTGGCCGGTGGCGCGAAGAGCCCGTTCGAGTACGTCAAGGACGACGGCGGACGGACGGTGATCAAGGTCACGGAGGAGTTCATCGTCAAGGCCGTCACGGGGAGGCGGCCACCGGCTGGCGGCGGCGGCGAGGGGGAGGACGCGCATGGGGCGGCGGCGCTGTGCAGCACGCCGGAGCTGAGGAAGCACTACGAGCAGCTGGTGGGCGCGGCGAGGGGGCGGCCGTGGTCGCCGCGGCTGGAGACGATCAAGGAGCGGAATGGGCGGCGGAGGGTGGTCGACGTCGTCGTCAGCCCCACCGGCAGGCTGTCTCCGGTGAGGTTGCTCGGGTTGGACAAGGGAATCAAGTAGACATGCATGAAAATTTTCGTCTAATCCTCTCTTCTAATTGGCTGCTGCTAGTTTTGCTTTGAAGATTGAAGCGATTTTTGGTTGGAAATTTGGATTAGATGTACATATGTTTTGGATGGGTATCTCTTGTTTGTTTCTACAAGAATTTTGTACATCCAGACCGATCTCTGTTTGTAAGTAAGGTAAATGATTTACCGTCAAATGGCAAAC] consensusID : consensus_2508#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 852 fasta sequence [CTAGAATATTCTAGATCGTGGTTAGTGCATCCATGGGCAACGGCATGTCTCCGTGCCTGTGCTCCCCGCCCGTGCACGGCGAGGAGGCGGCGGCGGAGGCGGCGGCGGCGAGGCTGGTGTTCTGGGGCGGGGCGGCGAGCCAGCTGGTGGCGTCCGCGGCGACGACGGCCGGCGACGTCATGGCGGAGCTCCCCGGCCACCTCGTCTGCGCCGGCGACTCGTTCTTCATCGGCCTCCCGATCCCGGCGCTGCCGGCCGGCGAGGAGCTGGCGGCGGGGCGGACGTACTTCGTGCTCCCCGCCGCGCGGTTCTCGTGCCAGCAGGCGCTCACCGCCGCGTCGCTCGCGTCGCTGTCGCCGTCCCCGGCCGCGAAGGTGTCCCTCGCCGGCGGCGCGTCGTCGCCGTTCGAGTACGTGACGGGCGACGACGGCATGGCGCTCATCAGGGTCCTCCCGGAGTTCATCGAGAGGGCGATCACCTGCGTGGCCCGCGTCGCGGGCGGCGGCAAGGCGGGCGGCGAGGCGGCGGCCGACGACCAGCTGTGCAGCACGCCGGAGCTGAGGAAGCACTACATGCAGCTGGTGGGCGCGCGGCAGCAGCGGCCGTGGTCGCCGGGGCTCGAGACGATATCGGAGGCCGAGAAGCGGCGGCGGCGGCGGTCGCCGGTGAGGCTGGTCGCGCTGGCGAAGGCGGCGTCAAGATAGCATTGGCGGCCGCGCCAAAAAAGAGTTCGGATTTGTGCATAGATACGGATGGAGACAAGTATACGGATTTGATTTAGTTCTAGCTCATTTTGAAGACAGTCAAATTAGATGAAAATTTGATGCAAAAATTGGCAAATTGAAGAATTAA] [+] EMBL AK109014 [CTAGAATATTCTAGATCGTGGTTAGTGCATCCATGGGCAACGGCATGTCTCCGTGCCTGTGCTCCCCGCCCGTGCACGGCGAGGAGGCGGCGGCGGAGGCGGCGGCGGCGAGGCTGGTGTTCTGGGGCGGGGCGGCGAGCCAGCTGGTGGCGTCCGCGGCGACGACGGCCGGCGACGTCATGGCGGAGCTCCCCGGCCACCTCGTCTGCGCCGGCGACTCGTTCTTCATCGGCCTCCCGATCCCGGCGCTGCCGGCCGGCGAGGAGCTGGCGGCGGGGCGGACGTACTTCGTGCTCCCCGCCGCGCGGTTCTCGTGCCAGCAGGCGCTCACCGCCGCGTCGCTCGCGTCGCTGTCGCCGTCCCCGGCCGCGAAGGTGTCCCTCGCCGGCGGCGCGTCGTCGCCGTTCGAGTACGTGACGGGCGACGACGGCATGGCGCTCATCAGGGTCCTCCCGGAGTTCATCGAGAGGGCGATCACCTGCGTGGCCCGCGTCGCGGGCGGCGGCAAGGCGGGCGGCGAGGCGGCGGCCGACGACCAGCTGTGCAGCACGCCGGAGCTGAGGAAGCACTACATGCAGCTGGTGGGCGCGCGGCAGCAGCGGCCGTGGTCGCCGGGGCTCGAGACGATATCGGAGGCCGAGAAGCGGCGGCGGCGGCGGTCGCCGGTGAGGCTGGTCGCGCTGGCGAAGGCGGCGTCAAGATAGCATTGGCGGCCGCGCCAAAAAAGAGTTCGGATTTGTGCATAGATACGGATGGAGACAAGTATACGGATTTGATTTAGTTCTAGCTCATTTTGAAGACAGTCAAATTAGATGAAAATTTGATGCAAAAATTGGCAAATTGAAGAATTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2508#0 -------------------GCTAGACATGGCGATGGGGAAGAATGGGTTGCTGGGGTGGC 41 consensus_2508#1 CTAGAATATTCTAGATCGTGGTTAGTGCATCCATGGGCAACGGCATGTCTCCGTGCCTGT 60 * * * ***** ** ** * * * * consensus_2508#0 TGTGCGTCGTCGTGC----CGGGGCGGCGGCGGCGGCGGCGAGGG--GCGCGGCTGGTGC 95 consensus_2508#1 GCTCCCCGCCCGTGCACGGCGAGGAGGCGGCGGCGGAGGCGGCGGCGGCGAGGCTGGTGT 120 * * ***** ** ** *********** **** ** *** ******** consensus_2508#0 TGTGGGGAGGGGAGA------GGCGGGCGGCGGCGGCCGGGAGGATGGCCGGGGAGGTGA 149 consensus_2508#1 TCTGGGGCGGGGCGGCGAGCCAGCTGGTGGCGTCCGCGGCGACGACGGCCGGCGACGTCA 180 * ***** **** * ** ** **** * ** * ** ** ****** ** ** * consensus_2508#0 TGATGGAGCACGCGGGGCGCCTCGTGGTGTGCCGCGCCGACGGGTTCTGCCTCGGCCGCG 209 consensus_2508#1 TGGCGGAGCTCCCCGGCCACCTCGTC---TGCGCCGGCGACTCGTTCTTCATCGGCCTCC 237 ** ***** * * ** * ****** *** ** **** ***** * ****** * consensus_2508#0 CGGCCCCCGTGCTCGCCATCGAGGACCGCCTCGACGCTTGCGCCACCTACCTCGTCCTCC 269 consensus_2508#1 CGATCCCGGCGCTGCCGGCCGGCGAGGAGCTGGCGGCGGGGCGGACGTACTTCGTGCTCC 297 ** *** * *** * ** ** ** * ** * ** *** **** **** consensus_2508#0 CCGTCGACCGCCTCCCCCAGGGCCGCGACGTCGTCACCGCCGCCTCGCTCGCCGCGCTCA 329 consensus_2508#1 CCGCCGCGCGGTTCTC---GTGCCAGCAGGCGCTCACCGCCGCGTCGCTCGCGTCGCTGT 354 *** ** ** ** * * *** * * ********** ******** **** consensus_2508#0 CCTACGACAGGGCCGCCGGCGCCCCGCTGCTGGCCGGTGGCGCGAAGAGCCCGTTCGAGT 389 consensus_2508#1 CGCCGTCCCCGGCCGCGAAGGT---GTCCCTCGCCGGCGGCGCGTCGTCGCCGTTCGAGT 411 * * ****** * * ** ***** ****** * ********** consensus_2508#0 ACGTCAAGGACGACGGCGGACGGACGGTGATCAAGGTCACGGAGGAGTTCATCGTCAAGG 449 consensus_2508#1 ACGTGACGGGCGACGACGGCATGGCGCTCATCAGGGTCCTCCCGGAGTTCATCGAGAGGG 471 **** * ** ***** *** * ** * **** **** *********** * ** consensus_2508#0 CCGTCACGGGGAGGCGGCCACCGGCTGGCGGCGGCGGCGAGGGGGAGGACGCG-CATGGG 508 consensus_2508#1 CGATCACCTGC--GTGGCC-CGCGTCGCGGGCGGCGGCAAGGCGGGCGGCGAGGCGGCGG 528 * **** * * **** * * * ********* *** ** * ** * * ** consensus_2508#0 GCGGCGGC--GCTGTGCAGCACGCCGGAGCTGAGGAAGCACTACGAGCAGCTGGTGGGCG 566 consensus_2508#1 CCGACGACCAGCTGTGCAGCACGCCGGAGCTGAGGAAGCACTACATGCAGCTGGTGGGCG 588 ** ** * ********************************** ************** consensus_2508#0 CGGCGAGGGGGCGGCCGTGGTCGCCGCGGCTGGAGACGATCAAGGAGCGGAATGGGCGGC 626 consensus_2508#1 CGCGGCAGCAGCGGCCGTGGTCGCCGGGGCTCGAGACGATATCGGAGGCCGAGAAGCGGC 648 ** * * **************** **** ******** **** * ***** consensus_2508#0 GGAGG--GTGGTCGACGTCGTCGTCAGCCCCACCGGC--AGGCTGTCTCCGGTGAGGTTG 682 consensus_2508#1 GGCGGCGGCGGTCGCCGGTGAGGCTGGTCGCGCTGGCGAAGGCGGCGTCAAGATAGCATT 708 ** ** * ***** ** * * * * * * *** **** * ** * ** * consensus_2508#0 CTCGGGTTGGACAAGGGAATCAAGTAGACATGCATGAAAATTTTCGTCTAATCCTCTCTT 742 consensus_2508#1 GGCGG-CCGCGCCAAAAAAGAGTTCGGATTTGTGCATAGATACGGATGGAGACAAGTATA 767 *** * * * ** ** ** * ** * * * * * consensus_2508#0 CTAATTGG--CTGCTGCTAGTTTTGCTTTGAAGATTGAAGCGATTTTTGGTTGGAAATTT 800 consensus_2508#1 CGGATTTGATTTAGTTCTAGCTC-ATTTTGAAGAC--AGTCAAAT--TAGATGAAAATTT 822 * *** * * * **** * ******** * * * * * * ** ****** consensus_2508#0 GGATTAGATGTACATATGTTTTGGATGGGTATCTCTTGTTTGTTTCTACAAGAATTTTGT 860 consensus_2508#1 GATGCAAAAATTGGCAAAT--TGAAGAATTAA---------------------------- 852 * * * * * * ** * ** consensus_2508#0 ACATCCAGACCGATCTCTGTTTGTAAGTAAGGTAAATGATTTACCGTCAAATGGCAAAC 919 consensus_2508#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||