These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1613 fasta sequence [ACTTCCACTCGCTGGCGATAGCACCGCACCGGAGCATATGCTCTCCGCAGCCGCCGCCGCCGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTCCTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAAAAAGCGAGACGTTTGCTCGTGGAGAGATACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACCAGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATTCTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGTCAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCTGTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTAGGTCCTTTACAGGAACTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTTTTGGACGTCTTCTAATTGGTGGACGATTCGGAACTCTTTTTGATGATGACCCAAAGAAGTGGCGGATGTATGCCGATTTCATTGGAAGTGCTGGAAGCATCTTCGAGCTCATCACTCCGCTCTATCCTGGATACTTCCTCCCACTTGCGTCCTTGGGGAATCTAGCAAAGGCTGTAGGAAGAGGATTTAGGGATCCATCCTTCCGTGTTATCCAAAATCACTTCGCGGAATCTGGAAATTTAGGGGAGGTTGCTGCAAAGGAGGAAGTATGGGAAGTAGGAGCTCAGTTGTTAGGCCTTTCTATCGGTGTATTTATTATGGATACATCAGGTATAAAGTCATCATACCCAACACTTGCTTTGACATGGCTTGGTGTCCGTCTTCTACATCTTTGGTTTCGCTATCAGTCCCTATCAGTTCTCAAATTCCGCACAGTAAGGTAAACTTGAAACGCGCTCGGATTCTCGTGAGATCACACGTTGCAAAGCACACAGTTCCTGATTATGTGACTTGCAACGAGGAGGAGAATATTTTAACATGGGAAAGATTCTTGCATCCACAAATTTCTTTTGGTGTTCCCATGGAGAGAATGCTTGGTGAAGAGGAATCCAGTGACGTGGTGGATAGACTATTGAAGTTGTACAGAAATGAGAAATACATCCTCTTTCTCAATCCGATTGGAACAGGCCGAGCAGCATTTTTTGTTACATTCAAGGAGGCTGCAACGAGCATGTCAGTCCTCAGGAGCCTATGGCAAGCGCATTGGCTTGACAAAAATCAGCTAAGGCAGGATGATGTTTTCTCTTGGCTAGAGGAGAGCGTTCTTGCGTTGGAGCACGGATTCCCTGACTTCCTCAAACAGATGGAAATAGCTGGCTGGGATCAGAACCAGATCATACTGAAGGTGCCAAAAGAACCCATCATGGTGATGGAACACCCTGACCAAGAGGTGTAAGATGACAATGCCAACTAACTAATCCATTCTACTCCCTCCGTGTTTTTTAAATGTAAAGGCGTATTGACTTTTGGACATGGCGTTAGACCATT] [+] EMBL AK066922 [ACTTCCACTCGCTGGCGATAGCACCGCACCGGAGCATATGCTCTCCGCAGCCGCCGCCGCCGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTCCTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAAAAAGCGAGACGTTTGCTCGTGGAGAGATACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACCAGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATTCTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGTCAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCTGTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTAGGTCCTTTACAGGAACTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTTTTGGACGTCTTCTAATTGGTGGACGATTCGGAACTCTTTTTGATGATGACCCAAAGAAGTGGCGGATGTATGCCGATTTCATTGGAAGTGCTGGAAGCATCTTCGAGCTCATCACTCCGCTCTATCCTGGATACTTCCTCCCACTTGCGTCCTTGGGGAATCTAGCAAAGGCTGTAGGAAGAGGATTTAGGGATCCATCCTTCCGTGTTATCCAAAATCACTTCGCGGAATCTGGAAATTTAGGGGAGGTTGCTGCAAAGGAGGAAGTATGGGAAGTAGGAGCTCAGTTGTTAGGCCTTTCTATCGGTGTATTTATTATGGATACATCAGGTATAAAGTCATCATACCCAACACTTGCTTTGACATGGCTTGGTGTCCGTCTTCTACATCTTTGGTTTCGCTATCAGTCCCTATCAGTTCTCAAATTCCGCACAGTAAGGTAAACTTGAAACGCGCTCGGATTCTCGTGAGATCACACGTTGCAAAGCACACAGTTCCTGATTATGTGACTTGCAACGAGGAGGAGAATATTTTAACATGGGAAAGATTCTTGCATCCACAAATTTCTTTTGGTGTTCCCATGGAGAGAATGCTTGGTGAAGAGGAATCCAGTGACGTGGTGGATAGACTATTGAAGTTGTACAGAAATGAGAAATACATCCTCTTTCTCAATCCGATTGGAACAGGCCGAGCAGCATTTTTTGTTACATTCAAGGAGGCTGCAACGAGCATGTCAGTCCTCAGGAGCCTATGGCAAGCGCATTGGCTTGACAAAAATCAGCTAAGGCAGGATGATGTTTTCTCTTGGCTAGAGGAGAGCGTTCTTGCGTTGGAGCACGGATTCCCTGACTTCCTCAAACAGATGGAAATAGCTGGCTGGGATCAGAACCAGATCATACTGAAGGTGCCAAAAGAACCCATCATGGTGATGGAACACCCTGACCAAGAGGTGTAAGATGACAATGCCAACTAACTAATCCATTCTACTCCCTCCGTGTTTTTTAAATGTAAAGGCGTATTGACTTTTGGACATGGCGTTAGACCATT] consensusID : consensus_2521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence [CACCGGAGCATATGCTCTCCGCAGCCGCCGCCGCCGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTCCTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAGTTCGTCACTGGATTTCGCGGCTCCGTTTCATGCCGCAGTTTTTTTTTTCTTCTTCTTCTTGTTGATAATGAAATTTGTGCGCTTCTTATGCAGAAAAGCGAGACGTTTGCTCGTGGAGAGATACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACCAGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATTCTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGTCAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCTGTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTGGGTCCTTTACAGGAACTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTTTTGGACGTCTTCTAATTGGTACGGTTAATATGTCTGGTCATATTTTCAGAATATAAATACTGTCCAGGAAGGTGGGAAGGTTCATTAATACTTTACATTGTGCAGGAAGGTTTATGAATAATCTATGTTGTTTAAGAAGCTTTGTGAATGATTTCT] [+] EMBL CB671077 [CACCGGAGCATATGCTCTCCGCAGCCGCCGCCGCCGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTCCTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAGTTCGTCACTGGATTTCGCGGCTCCGTTTCATGCCGCAGTTTTTTTTTTCTTCTTCTTCTTGTTGATAATGAAATTTGTGCGCTTCTTATGCAGAAAAGCGAGACGTTTGCTCGTGGAGAGATACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACCAGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATTCTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGTCAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCTGTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTGGGTCCTTTACAGGAACTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTTTTGGACGTCTTCTAATTGGTACGGTTAATATGTCTGGTCATATTTTCAGAATATAAATACTGTCCAGGAAGGTGGGAAGGTTCATTAATACTTTACATTGTGCAGGAAGGTTTATGAATAATCTATGTTGTTTAAGAAGCTTTGTGAATGATTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2521#0 ACTTCCACTCGCTGGCGATAGCACCGCACCGGAGCATATGCTCTCCGCAGCCGCCGCCGC 60 consensus_2521#1 --------------------------CACCGGAGCATATGCTCTCCGCAGCCGCCGCCGC 34 ********************************** consensus_2521#0 CGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTC 120 consensus_2521#1 CGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTC 94 ************************************************************ consensus_2521#0 CTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGA--- 177 consensus_2521#1 CTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAGTT 154 ********************************************************* consensus_2521#0 ------------------------------------------------------------ consensus_2521#1 CGTCACTGGATTTCGCGGCTCCGTTTCATGCCGCAGTTTTTTTTTTCTTCTTCTTCTTGT 214 consensus_2521#0 -------------------------------AAAAGCGAGACGTTTGCTCGTGGAGAGAT 206 consensus_2521#1 TGATAATGAAATTTGTGCGCTTCTTATGCAGAAAAGCGAGACGTTTGCTCGTGGAGAGAT 274 ***************************** consensus_2521#0 ACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACC 266 consensus_2521#1 ACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACC 334 ************************************************************ consensus_2521#0 AGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATT 326 consensus_2521#1 AGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATT 394 ************************************************************ consensus_2521#0 CTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGT 386 consensus_2521#1 CTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGT 454 ************************************************************ consensus_2521#0 CAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCT 446 consensus_2521#1 CAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCT 514 ************************************************************ consensus_2521#0 GTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTAGGTCCTTTACAGGAA 506 consensus_2521#1 GTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTGGGTCCTTTACAGGAA 574 ******************************************** *************** consensus_2521#0 CTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTT 566 consensus_2521#1 CTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTT 634 ************************************************************ consensus_2521#0 TTGGACGTCTTCTAATTGGTGGACGATTCGGAACTCTTTTTGATGATGACCCAAAGAAGT 626 consensus_2521#1 TTGGACGTCTTCTAATTGGT--ACGGTT----AATATGTCTGGTCATATTTTCAGAATAT 688 ******************** *** ** * * * * ** * ** * * * consensus_2521#0 GGCGGATGTATGCCGATTTCATTGGAAGTGCTGGAAGCATCTTCGAGCTCATCACTCCGC 686 consensus_2521#1 AA-------ATACTG--TCCA--GGAAG-GTGGGAAGGTTCATTAA------TACTTTAC 730 ** * * * ** ***** * ***** ** * * *** * consensus_2521#0 TCTATCCTGGATACTTCCTC--CCACTTGCGTC-CTTGGGGAATCTAGCAAAGGCTGTAG 743 consensus_2521#1 ATTGTGCAGGAAGGTTTATGAATAATCTATGTTGTTTAAGAAGCTTTGTGAATGATTTCT 790 * * * *** ** * * * ** ** * * * * ** * * * consensus_2521#0 GAAGAGGATTTAGGGATCCATCCTTCCGTGTTATCCAAAATCACTTCGCGGAATCTGGAA 803 consensus_2521#1 ------------------------------------------------------------ consensus_2521#0 ATTTAGGGGAGGTTGCTGCAAAGGAGGAAGTATGGGAAGTAGGAGCTCAGTTGTTAGGCC 863 consensus_2521#1 ------------------------------------------------------------ consensus_2521#0 TTTCTATCGGTGTATTTATTATGGATACATCAGGTATAAAGTCATCATACCCAACACTTG 923 consensus_2521#1 ------------------------------------------------------------ consensus_2521#0 CTTTGACATGGCTTGGTGTCCGTCTTCTACATCTTTGGTTTCGCTATCAGTCCCTATCAG 983 consensus_2521#1 ------------------------------------------------------------ consensus_2521#0 TTCTCAAATTCCGCACAGTAAGGTAAACTTGAAACGCGCTCGGATTCTCGTGAGATCACA 1043 consensus_2521#1 ------------------------------------------------------------ consensus_2521#0 CGTTGCAAAGCACACAGTTCCTGATTATGTGACTTGCAACGAGGAGGAGAATATTTTAAC 1103 consensus_2521#1 ------------------------------------------------------------ consensus_2521#0 ATGGGAAAGATTCTTGCATCCACAAATTTCTTTTGGTGTTCCCATGGAGAGAATGCTTGG 1163 consensus_2521#1 ------------------------------------------------------------ consensus_2521#0 TGAAGAGGAATCCAGTGACGTGGTGGATAGACTATTGAAGTTGTACAGAAATGAGAAATA 1223 consensus_2521#1 ------------------------------------------------------------ consensus_2521#0 CATCCTCTTTCTCAATCCGATTGGAACAGGCCGAGCAGCATTTTTTGTTACATTCAAGGA 1283 consensus_2521#1 ------------------------------------------------------------ consensus_2521#0 GGCTGCAACGAGCATGTCAGTCCTCAGGAGCCTATGGCAAGCGCATTGGCTTGACAAAAA 1343 consensus_2521#1 ------------------------------------------------------------ consensus_2521#0 TCAGCTAAGGCAGGATGATGTTTTCTCTTGGCTAGAGGAGAGCGTTCTTGCGTTGGAGCA 1403 consensus_2521#1 ------------------------------------------------------------ consensus_2521#0 CGGATTCCCTGACTTCCTCAAACAGATGGAAATAGCTGGCTGGGATCAGAACCAGATCAT 1463 consensus_2521#1 ------------------------------------------------------------ consensus_2521#0 ACTGAAGGTGCCAAAAGAACCCATCATGGTGATGGAACACCCTGACCAAGAGGTGTAAGA 1523 consensus_2521#1 ------------------------------------------------------------ consensus_2521#0 TGACAATGCCAACTAACTAATCCATTCTACTCCCTCCGTGTTTTTTAAATGTAAAGGCGT 1583 consensus_2521#1 ------------------------------------------------------------ consensus_2521#0 ATTGACTTTTGGACATGGCGTTAGACCATT 1613 consensus_2521#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||