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Oryza sativa
cluster # 2521 cluster # 2521       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2521#0 length = 1613 sequences # 1  
consensus_2521#1 length = 790 sequences # 1  

consensusID : consensus_2521#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1613
fasta sequence
                              [ACTTCCACTCGCTGGCGATAGCACCGCACCGGAGCATATGCTCTCCGCAGCCGCCGCCGCCGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTCCTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAAAAAGCGAGACGTTTGCTCGTGGAGAGATACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACCAGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATTCTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGTCAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCTGTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTAGGTCCTTTACAGGAACTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTTTTGGACGTCTTCTAATTGGTGGACGATTCGGAACTCTTTTTGATGATGACCCAAAGAAGTGGCGGATGTATGCCGATTTCATTGGAAGTGCTGGAAGCATCTTCGAGCTCATCACTCCGCTCTATCCTGGATACTTCCTCCCACTTGCGTCCTTGGGGAATCTAGCAAAGGCTGTAGGAAGAGGATTTAGGGATCCATCCTTCCGTGTTATCCAAAATCACTTCGCGGAATCTGGAAATTTAGGGGAGGTTGCTGCAAAGGAGGAAGTATGGGAAGTAGGAGCTCAGTTGTTAGGCCTTTCTATCGGTGTATTTATTATGGATACATCAGGTATAAAGTCATCATACCCAACACTTGCTTTGACATGGCTTGGTGTCCGTCTTCTACATCTTTGGTTTCGCTATCAGTCCCTATCAGTTCTCAAATTCCGCACAGTAAGGTAAACTTGAAACGCGCTCGGATTCTCGTGAGATCACACGTTGCAAAGCACACAGTTCCTGATTATGTGACTTGCAACGAGGAGGAGAATATTTTAACATGGGAAAGATTCTTGCATCCACAAATTTCTTTTGGTGTTCCCATGGAGAGAATGCTTGGTGAAGAGGAATCCAGTGACGTGGTGGATAGACTATTGAAGTTGTACAGAAATGAGAAATACATCCTCTTTCTCAATCCGATTGGAACAGGCCGAGCAGCATTTTTTGTTACATTCAAGGAGGCTGCAACGAGCATGTCAGTCCTCAGGAGCCTATGGCAAGCGCATTGGCTTGACAAAAATCAGCTAAGGCAGGATGATGTTTTCTCTTGGCTAGAGGAGAGCGTTCTTGCGTTGGAGCACGGATTCCCTGACTTCCTCAAACAGATGGAAATAGCTGGCTGGGATCAGAACCAGATCATACTGAAGGTGCCAAAAGAACCCATCATGGTGATGGAACACCCTGACCAAGAGGTGTAAGATGACAATGCCAACTAACTAATCCATTCTACTCCCTCCGTGTTTTTTAAATGTAAAGGCGTATTGACTTTTGGACATGGCGTTAGACCATT]

[+] EMBL AK066922             [ACTTCCACTCGCTGGCGATAGCACCGCACCGGAGCATATGCTCTCCGCAGCCGCCGCCGCCGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTCCTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAAAAAGCGAGACGTTTGCTCGTGGAGAGATACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACCAGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATTCTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGTCAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCTGTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTAGGTCCTTTACAGGAACTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTTTTGGACGTCTTCTAATTGGTGGACGATTCGGAACTCTTTTTGATGATGACCCAAAGAAGTGGCGGATGTATGCCGATTTCATTGGAAGTGCTGGAAGCATCTTCGAGCTCATCACTCCGCTCTATCCTGGATACTTCCTCCCACTTGCGTCCTTGGGGAATCTAGCAAAGGCTGTAGGAAGAGGATTTAGGGATCCATCCTTCCGTGTTATCCAAAATCACTTCGCGGAATCTGGAAATTTAGGGGAGGTTGCTGCAAAGGAGGAAGTATGGGAAGTAGGAGCTCAGTTGTTAGGCCTTTCTATCGGTGTATTTATTATGGATACATCAGGTATAAAGTCATCATACCCAACACTTGCTTTGACATGGCTTGGTGTCCGTCTTCTACATCTTTGGTTTCGCTATCAGTCCCTATCAGTTCTCAAATTCCGCACAGTAAGGTAAACTTGAAACGCGCTCGGATTCTCGTGAGATCACACGTTGCAAAGCACACAGTTCCTGATTATGTGACTTGCAACGAGGAGGAGAATATTTTAACATGGGAAAGATTCTTGCATCCACAAATTTCTTTTGGTGTTCCCATGGAGAGAATGCTTGGTGAAGAGGAATCCAGTGACGTGGTGGATAGACTATTGAAGTTGTACAGAAATGAGAAATACATCCTCTTTCTCAATCCGATTGGAACAGGCCGAGCAGCATTTTTTGTTACATTCAAGGAGGCTGCAACGAGCATGTCAGTCCTCAGGAGCCTATGGCAAGCGCATTGGCTTGACAAAAATCAGCTAAGGCAGGATGATGTTTTCTCTTGGCTAGAGGAGAGCGTTCTTGCGTTGGAGCACGGATTCCCTGACTTCCTCAAACAGATGGAAATAGCTGGCTGGGATCAGAACCAGATCATACTGAAGGTGCCAAAAGAACCCATCATGGTGATGGAACACCCTGACCAAGAGGTGTAAGATGACAATGCCAACTAACTAATCCATTCTACTCCCTCCGTGTTTTTTAAATGTAAAGGCGTATTGACTTTTGGACATGGCGTTAGACCATT]


>consensus_2521#0 ACTTCCACTCGCTGGCGATAGCACCGCACCGGAGCATATGCTCTCCGCAGCCGCCGCCGC CGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTC CTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAAAA AGCGAGACGTTTGCTCGTGGAGAGATACCAGGATGGGGTTTCCAAGAGGTATATACTGGA TGGAAACTCTAAGCTACAGATTCACCAGGAGAAGAATGAACATATGGCGAACACATTGGA AGAAGAAGAAAAAGAAGAAGCAAATTCTTCGATTCCCCGTGCTATTAAGGATTTTGTACT TCCCGCGGGGTTTCCAGGGTCTGTGTCAGACGATTACCTGGAATATATGCTATGGCAATT ACCAACAAATGTAACAGGATGGATCTGTCACACGCTGGTTACATCAACCCTTCTAAAGGC TGTAGGTGTTAGGTCCTTTACAGGAACTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATG GGTATCGAAAGATGGCATAGGGGCTTTTGGACGTCTTCTAATTGGTGGACGATTCGGAAC TCTTTTTGATGATGACCCAAAGAAGTGGCGGATGTATGCCGATTTCATTGGAAGTGCTGG AAGCATCTTCGAGCTCATCACTCCGCTCTATCCTGGATACTTCCTCCCACTTGCGTCCTT GGGGAATCTAGCAAAGGCTGTAGGAAGAGGATTTAGGGATCCATCCTTCCGTGTTATCCA AAATCACTTCGCGGAATCTGGAAATTTAGGGGAGGTTGCTGCAAAGGAGGAAGTATGGGA AGTAGGAGCTCAGTTGTTAGGCCTTTCTATCGGTGTATTTATTATGGATACATCAGGTAT AAAGTCATCATACCCAACACTTGCTTTGACATGGCTTGGTGTCCGTCTTCTACATCTTTG GTTTCGCTATCAGTCCCTATCAGTTCTCAAATTCCGCACAGTAAGGTAAACTTGAAACGC GCTCGGATTCTCGTGAGATCACACGTTGCAAAGCACACAGTTCCTGATTATGTGACTTGC AACGAGGAGGAGAATATTTTAACATGGGAAAGATTCTTGCATCCACAAATTTCTTTTGGT GTTCCCATGGAGAGAATGCTTGGTGAAGAGGAATCCAGTGACGTGGTGGATAGACTATTG AAGTTGTACAGAAATGAGAAATACATCCTCTTTCTCAATCCGATTGGAACAGGCCGAGCA GCATTTTTTGTTACATTCAAGGAGGCTGCAACGAGCATGTCAGTCCTCAGGAGCCTATGG CAAGCGCATTGGCTTGACAAAAATCAGCTAAGGCAGGATGATGTTTTCTCTTGGCTAGAG GAGAGCGTTCTTGCGTTGGAGCACGGATTCCCTGACTTCCTCAAACAGATGGAAATAGCT GGCTGGGATCAGAACCAGATCATACTGAAGGTGCCAAAAGAACCCATCATGGTGATGGAA CACCCTGACCAAGAGGTGTAAGATGACAATGCCAACTAACTAATCCATTCTACTCCCTCC GTGTTTTTTAAATGTAAAGGCGTATTGACTTTTGGACATGGCGTTAGACCATT



consensusID : consensus_2521#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 790
fasta sequence
                              [CACCGGAGCATATGCTCTCCGCAGCCGCCGCCGCCGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTCCTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAGTTCGTCACTGGATTTCGCGGCTCCGTTTCATGCCGCAGTTTTTTTTTTCTTCTTCTTCTTGTTGATAATGAAATTTGTGCGCTTCTTATGCAGAAAAGCGAGACGTTTGCTCGTGGAGAGATACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACCAGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATTCTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGTCAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCTGTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTGGGTCCTTTACAGGAACTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTTTTGGACGTCTTCTAATTGGTACGGTTAATATGTCTGGTCATATTTTCAGAATATAAATACTGTCCAGGAAGGTGGGAAGGTTCATTAATACTTTACATTGTGCAGGAAGGTTTATGAATAATCTATGTTGTTTAAGAAGCTTTGTGAATGATTTCT]

[+] EMBL CB671077             [CACCGGAGCATATGCTCTCCGCAGCCGCCGCCGCCGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTCCTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAGTTCGTCACTGGATTTCGCGGCTCCGTTTCATGCCGCAGTTTTTTTTTTCTTCTTCTTCTTGTTGATAATGAAATTTGTGCGCTTCTTATGCAGAAAAGCGAGACGTTTGCTCGTGGAGAGATACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACCAGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATTCTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGTCAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCTGTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTGGGTCCTTTACAGGAACTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTTTTGGACGTCTTCTAATTGGTACGGTTAATATGTCTGGTCATATTTTCAGAATATAAATACTGTCCAGGAAGGTGGGAAGGTTCATTAATACTTTACATTGTGCAGGAAGGTTTATGAATAATCTATGTTGTTTAAGAAGCTTTGTGAATGATTTCT]


>consensus_2521#1 CACCGGAGCATATGCTCTCCGCAGCCGCCGCCGCCGCCGCCGACGCGAGCTTCCATGGCG GAGCTCCCCGACGAAGAAGACCGCGGCTACGCTCCTGCCTCGCGTCCCCGCCGGCATCCG GTGGAGGAGGAGGAGACTGCCGCGAGTCCGAGTTCGTCACTGGATTTCGCGGCTCCGTTT CATGCCGCAGTTTTTTTTTTCTTCTTCTTCTTGTTGATAATGAAATTTGTGCGCTTCTTA TGCAGAAAAGCGAGACGTTTGCTCGTGGAGAGATACCAGGATGGGGTTTCCAAGAGGTAT ATACTGGATGGAAACTCTAAGCTACAGATTCACCAGGAGAAGAATGAACATATGGCGAAC ACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATTCTTCGATTCCCCGTGCTATTAAGGAT TTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGTCAGACGATTACCTGGAATATATGCTA TGGCAATTACCAACAAATGTAACAGGATGGATCTGTCACACGCTGGTTACATCAACCCTT CTAAAGGCTGTAGGTGTTGGGTCCTTTACAGGAACTTCAGCAGCTGCTTCTGCTGCTGCT ATAAGATGGGTATCGAAAGATGGCATAGGGGCTTTTGGACGTCTTCTAATTGGTACGGTT AATATGTCTGGTCATATTTTCAGAATATAAATACTGTCCAGGAAGGTGGGAAGGTTCATT AATACTTTACATTGTGCAGGAAGGTTTATGAATAATCTATGTTGTTTAAGAAGCTTTGTG AATGATTTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2521#0      ACTTCCACTCGCTGGCGATAGCACCGCACCGGAGCATATGCTCTCCGCAGCCGCCGCCGC 60
consensus_2521#1      --------------------------CACCGGAGCATATGCTCTCCGCAGCCGCCGCCGC 34
                                                **********************************

consensus_2521#0      CGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTC 120
consensus_2521#1      CGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTC 94
                      ************************************************************

consensus_2521#0      CTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGA--- 177
consensus_2521#1      CTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAGTT 154
                      *********************************************************   

consensus_2521#0      ------------------------------------------------------------
consensus_2521#1      CGTCACTGGATTTCGCGGCTCCGTTTCATGCCGCAGTTTTTTTTTTCTTCTTCTTCTTGT 214
                                                                                  

consensus_2521#0      -------------------------------AAAAGCGAGACGTTTGCTCGTGGAGAGAT 206
consensus_2521#1      TGATAATGAAATTTGTGCGCTTCTTATGCAGAAAAGCGAGACGTTTGCTCGTGGAGAGAT 274
                                                     *****************************

consensus_2521#0      ACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACC 266
consensus_2521#1      ACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACC 334
                      ************************************************************

consensus_2521#0      AGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATT 326
consensus_2521#1      AGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATT 394
                      ************************************************************

consensus_2521#0      CTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGT 386
consensus_2521#1      CTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGT 454
                      ************************************************************

consensus_2521#0      CAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCT 446
consensus_2521#1      CAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCT 514
                      ************************************************************

consensus_2521#0      GTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTAGGTCCTTTACAGGAA 506
consensus_2521#1      GTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTGGGTCCTTTACAGGAA 574
                      ******************************************** ***************

consensus_2521#0      CTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTT 566
consensus_2521#1      CTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTT 634
                      ************************************************************

consensus_2521#0      TTGGACGTCTTCTAATTGGTGGACGATTCGGAACTCTTTTTGATGATGACCCAAAGAAGT 626
consensus_2521#1      TTGGACGTCTTCTAATTGGT--ACGGTT----AATATGTCTGGTCATATTTTCAGAATAT 688
                      ********************  *** **    * * * * ** * **      *  *  *

consensus_2521#0      GGCGGATGTATGCCGATTTCATTGGAAGTGCTGGAAGCATCTTCGAGCTCATCACTCCGC 686
consensus_2521#1      AA-------ATACTG--TCCA--GGAAG-GTGGGAAGGTTCATTAA------TACTTTAC 730
                               ** * *  * **  ***** *  *****  ** *  *       ***   *

consensus_2521#0      TCTATCCTGGATACTTCCTC--CCACTTGCGTC-CTTGGGGAATCTAGCAAAGGCTGTAG 743
consensus_2521#1      ATTGTGCAGGAAGGTTTATGAATAATCTATGTTGTTTAAGAAGCTTTGTGAATGATTTCT 790
                        * * * ***   **  *     *  *  **   **  * *   * *  ** * * *  

consensus_2521#0      GAAGAGGATTTAGGGATCCATCCTTCCGTGTTATCCAAAATCACTTCGCGGAATCTGGAA 803
consensus_2521#1      ------------------------------------------------------------
                                                                                  

consensus_2521#0      ATTTAGGGGAGGTTGCTGCAAAGGAGGAAGTATGGGAAGTAGGAGCTCAGTTGTTAGGCC 863
consensus_2521#1      ------------------------------------------------------------
                                                                                  

consensus_2521#0      TTTCTATCGGTGTATTTATTATGGATACATCAGGTATAAAGTCATCATACCCAACACTTG 923
consensus_2521#1      ------------------------------------------------------------
                                                                                  

consensus_2521#0      CTTTGACATGGCTTGGTGTCCGTCTTCTACATCTTTGGTTTCGCTATCAGTCCCTATCAG 983
consensus_2521#1      ------------------------------------------------------------
                                                                                  

consensus_2521#0      TTCTCAAATTCCGCACAGTAAGGTAAACTTGAAACGCGCTCGGATTCTCGTGAGATCACA 1043
consensus_2521#1      ------------------------------------------------------------
                                                                                  

consensus_2521#0      CGTTGCAAAGCACACAGTTCCTGATTATGTGACTTGCAACGAGGAGGAGAATATTTTAAC 1103
consensus_2521#1      ------------------------------------------------------------
                                                                                  

consensus_2521#0      ATGGGAAAGATTCTTGCATCCACAAATTTCTTTTGGTGTTCCCATGGAGAGAATGCTTGG 1163
consensus_2521#1      ------------------------------------------------------------
                                                                                  

consensus_2521#0      TGAAGAGGAATCCAGTGACGTGGTGGATAGACTATTGAAGTTGTACAGAAATGAGAAATA 1223
consensus_2521#1      ------------------------------------------------------------
                                                                                  

consensus_2521#0      CATCCTCTTTCTCAATCCGATTGGAACAGGCCGAGCAGCATTTTTTGTTACATTCAAGGA 1283
consensus_2521#1      ------------------------------------------------------------
                                                                                  

consensus_2521#0      GGCTGCAACGAGCATGTCAGTCCTCAGGAGCCTATGGCAAGCGCATTGGCTTGACAAAAA 1343
consensus_2521#1      ------------------------------------------------------------
                                                                                  

consensus_2521#0      TCAGCTAAGGCAGGATGATGTTTTCTCTTGGCTAGAGGAGAGCGTTCTTGCGTTGGAGCA 1403
consensus_2521#1      ------------------------------------------------------------
                                                                                  

consensus_2521#0      CGGATTCCCTGACTTCCTCAAACAGATGGAAATAGCTGGCTGGGATCAGAACCAGATCAT 1463
consensus_2521#1      ------------------------------------------------------------
                                                                                  

consensus_2521#0      ACTGAAGGTGCCAAAAGAACCCATCATGGTGATGGAACACCCTGACCAAGAGGTGTAAGA 1523
consensus_2521#1      ------------------------------------------------------------
                                                                                  

consensus_2521#0      TGACAATGCCAACTAACTAATCCATTCTACTCCCTCCGTGTTTTTTAAATGTAAAGGCGT 1583
consensus_2521#1      ------------------------------------------------------------
                                                                                  

consensus_2521#0      ATTGACTTTTGGACATGGCGTTAGACCATT 1613
consensus_2521#1      ------------------------------
                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)