These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1968 fasta sequence [TCATGATTCAGATTCAGATCATGATGATAACAAGAAGAAGAAGAAGAATTCTCGCTATGGTTCAGAAGATGATTCTGAGGCTAAATATGATGAAAAGAAGCACAGTAAACACTTGAAGAATTCTCGCCATGATACAGATGATGATTCTGAGAGTGACCATAAGAATGCAAAGTGTAAAAAGAGTTCTCGCCATGATTCAGAGTCTGATTCTGAGAGTGATCATAAGAATGCAAGGCGTGGAAAGAGCTCTCGCCATGATTCAGAGTCTGATTCAGATGGTGATTATGGCAAGAAGACAACAAAACATGGCAAGAACGATCGTGATGAGAGAAAGAAAAGGCCTGCCACGATCTCTCGCCGACATGACTCAGAAGATGAAAAGCCTAGAAAGGGTAAGCGCATGGATGATTCAGATACTGACTCGGAGGGTGATGGTTCGTTCAGTGAGTCGGACAGCGACTATGATCGGAAGAAGAAGAAATCTACAAATAGTTCTCGCAATGAATCTAAAGATGATAAGCCCCGAAGAAAGGCTCCTAAGGACAAGTATTCTGATGGCCCAGAAAGTGGCTCAGACAGTGATCATGGTGGAAAATCAAAGTATTCAAAGATTTCTCGCCGTGATTCTGAACTTCAGTCCCGAAAGGATGCTGATAAACAGGACCAGTACCGTGATAAATTGAAGAGTGAGTTTGCTAGCGATGGCTATGGAGAGAAGAAATCTGTTAAGATCCCATACAATGACTTGAAAGATGACAAGCCAAGCAGCAAGGTTGTTCGGAAGGACCGGTACAGTGATGAATCAGAGACTGATTCAGAAACTTATGTTAAGAAAAAGAAGAATCTTCCGAAGTCCTATCACCATAGTGATAAACCAGCACAAAGAGGTAAAGAAAAGGAAGAGAACTCTGGAAAGAATGTTGATAAGCGCAAGAGGCATGATACTGATTCTGATTCAGATAGCCATGCTCGTGAAAGGAAAAGACACCTTGATGCACGGGCGAGTTTGGCTGCCCAAAAGAAAAGAAGTGTGACTAGCTCAAGTGAGAGTTCAGAGAGTTCAGATTACAGCAGTAGCAGTGATAGTGAATCAGATGTGAGTTCTGACAGCCGCGAGGATAGGAAATCAGCAAGACAGTTGAAGCATGATGAGTTAGAGAGAAAGAAAAGGAGTCAAGACGAGAAGAGAAAGGAGCTAGAGAAGCAAAAGCAGGAGGAAGAGAGAAAAGAGCTGGACAGGCAGAAGCAGAGGGAGGAAGAGAGAAAGGCTAAAGAGCTTGAGAAGCAGAAGCAGAGGGAGGAAGAGAGAAAGGCATTGGAGAAGCAGAAGCAGGGGGAGAGGGACGGAGATAGATATGAGCGTGACCATGAGGGGAGGAAAGGCGAAAATGATGTTGAAAGAGACTACAAAAGAAAAGTTGGAGAAGATAGGTATGATCCAAGCAGGAGGCAGGATGAGGATAGGTATGATCCAAACAGGAGACATGATGAAGATATGTATGATCCAAATAGGAGGCATGAAGAACATGGTCGACGAAGAAATAGAGATTTTGATAGCCGTGATCCGAAAAGGTCTAGACATGATGATTCTTATCATCATTCTCGAAGGGACTATGAACAGCGTTATTCTAGAGATGAATATAGAGACAGGAGGCATCGTTGAATGCAAGTCATGTCCATCTCTGGTTTCTTCAAGCAGAAGAGGGATGCATCTTTACATGAACCGAGCAGATGATCGATGTCCTGCTCCCTCAAGTTTTTCAGAGTCCTACCAGAAGAAGACTTGATGCAGCAGTAAATCTCTCCTAGCAGTAGAGAACCTTTTGCCTCAGGAATGTACGTTTGCTTATGTTTGTATGAACTTTCATACTTGTTGTTTTGTTGTGTGAATGATCAATATGTATTCTGGTGGATATAATTACCTTGTGTCTGCAAGAAATATATGATTTAACACTGTGCCCATGTGGT] [+] EMBL AK063294 [TCATGATTCAGATTCAGATCATGATGATAACAAGAAGAAGAAGAAGAATTCTCGCTATGGTTCAGAAGATGATTCTGAGGCTAAATATGATGAAAAGAAGCACAGTAAACACTTGAAGAATTCTCGCCATGATACAGATGATGATTCTGAGAGTGACCATAAGAATGCAAAGTGTAAAAAGAGTTCTCGCCATGATTCAGAGTCTGATTCTGAGAGTGATCATAAGAATGCAAGGCGTGGAAAGAGCTCTCGCCATGATTCAGAGTCTGATTCAGATGGTGATTATGGCAAGAAGACAACAAAACATGGCAAGAACGATCGTGATGAGAGAAAGAAAAGGCCTGCCACGATCTCTCGCCGACATGACTCAGAAGATGAAAAGCCTAGAAAGGGTAAGCGCATGGATGATTCAGATACTGACTCGGAGGGTGATGGTTCGTTCAGTGAGTCGGACAGCGACTATGATCGGAAGAAGAAGAAATCTACAAATAGTTCTCGCAATGAATCTAAAGATGATAAGCCCCGAAGAAAGGCTCCTAAGGACAAGTATTCTGATGGCCCAGAAAGTGGCTCAGACAGTGATCATGGTGGAAAATCAAAGTATTCAAAGATTTCTCGCCGTGATTCTGAACTTCAGTCCCGAAAGGATGCTGATAAACAGGACCAGTACCGTGATAAATTGAAGAGTGAGTTTGCTAGCGATGGCTATGGAGAGAAGAAATCTGTTAAGATCCCATACAATGACTTGAAAGATGACAAGCCAAGCAGCAAGGTTGTTCGGAAGGACCGGTACAGTGATGAATCAGAGACTGATTCAGAAACTTATGTTAAGAAAAAGAAGAATCTTCCGAAGTCCTATCACCATAGTGATAAACCAGCACAAAGAGGTAAAGAAAAGGAAGAGAACTCTGGAAAGAATGTTGATAAGCGCAAGAGGCATGATACTGATTCTGATTCAGATAGCCATGCTCGTGAAAGGAAAAGACACCTTGATGCACGGGCGAGTTTGGCTGCCCAAAAGAAAAGAAGTGTGACTAGCTCAAGTGAGAGTTCAGAGAGTTCAGATTACAGCAGTAGCAGTGATAGTGAATCAGATGTGAGTTCTGACAGCCGCGAGGATAGGAAATCAGCAAGACAGTTGAAGCATGATGAGTTAGAGAGAAAGAAAAGGAGTCAAGACGAGAAGAGAAAGGAGCTAGAGAAGCAAAAGCAGGAGGAAGAGAGAAAAGAGCTGGACAGGCAGAAGCAGAGGGAGGAAGAGAGAAAGGCTAAAGAGCTTGAGAAGCAGAAGCAGAGGGAGGAAGAGAGAAAGGCATTGGAGAAGCAGAAGCAGGGGGAGAGGGACGGAGATAGATATGAGCGTGACCATGAGGGGAGGAAAGGCGAAAATGATGTTGAAAGAGACTACAAAAGAAAAGTTGGAGAAGATAGGTATGATCCAAGCAGGAGGCAGGATGAGGATAGGTATGATCCAAACAGGAGACATGATGAAGATATGTATGATCCAAATAGGAGGCATGAAGAACATGGTCGACGAAGAAATAGAGATTTTGATAGCCGTGATCCGAAAAGGTCTAGACATGATGATTCTTATCATCATTCTCGAAGGGACTATGAACAGCGTTATTCTAGAGATGAATATAGAGACAGGAGGCATCGTTGAATGCAAGTCATGTCCATCTCTGGTTTCTTCAAGCAGAAGAGGGATGCATCTTTACATGAACCGAGCAGATGATCGATGTCCTGCTCCCTCAAGTTTTTCAGAGTCCTACCAGAAGAAGACTTGATGCAGCAGTAAATCTCTCCTAGCAGTAGAGAACCTTTTGCCTCAGGAATGTACGTTTGCTTATGTTTGTATGAACTTTCATACTTGTTGTTTTGTTGTGTGAATGATCAATATGTATTCTGGTGGATATAATTACCTTGTGTCTGCAAGAAATATATGATTTAACACTGTGCCCATGTGGT] consensusID : consensus_255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [GGGAAAAGAAAAGGCTTGGGAAACCAAAAACGGGGAAGAGGGGGGAAAAAAATTATTAGGTGCCCCTTGGGGGGAGAAAGGCAATATTTTTTTTAAAGGGGTCTCAAAAAAAATGTGGAGATTATGGTTTTGTTCCAACCGGGGCCATGTTTGGGTATGGTTTTTTTCCAACCGGGGCCCTTATGAATATGGGTTATGTCCCAATTGGGGGCCTTAAACACAGTGGTCCAAAAAAAAAAGAATTTTTAATACCTGTTTCCAAAAGGGTCTACACAGGATGTTTCTTATCCTCTTTCCAAAGGGGCCTATGAAAAGGTTTTTCTAGAGTTGAATATAGAGCCGGGGGGTTCGTTGAAATCCAAGTCATGTCAATTTGGGGTTTTTCAAGCAGAAAGGGGATGCTTCTTTCATGAACCGAGCAGATGATCAATGTCTTGTTCCCTCAAGTTTTTAGAGGTCCTAGCAGAAGAAGACTTGATGCAGCAGTAATCTTTTCCTAGCAGTAGAGAACCTTTTGCCTCAGGAATGTACGTTTGCGTATGTTTGTATGAACTTTCATACTTGTTGCTTTGTTGTGTGAATGATCAATATGTATTTTGGTGGATATAATTACCCTGTGTTTGCAAGAAATATATGATTTAACCCTGTGCCCAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760607 [GGGAAAAGAAAAGGCTTGGGAAACCAAAAACGGGGAAGAGGGGGGAAAAAAATTATTAGGTGCCCCTTGGGGGGAGAAAGGCAATATTTTTTTTAAAGGGGTCTCAAAAAAAATGTGGAGATTATGGTTTTGTTCCAACCGGGGCCATGTTTGGGTATGGTTTTTTTCCAACCGGGGCCCTTATGAATATGGGTTATGTCCCAATTGGGGGCCTTAAACACAGTGGTCCAAAAAAAAAAGAATTTTTAATACCTGTTTCCAAAAGGGTCTACACAGGATGTTTCTTATCCTCTTTCCAAAGGGGCCTATGAAAAGGTTTTTCTAGAGTTGAATATAGAGCCGGGGGGTTCGTTGAAATCCAAGTCATGTCAATTTGGGGTTTTTCAAGCAGAAAGGGGATGCTTCTTTCATGAACCGAGCAGATGATCAATGTCTTGTTCCCTCAAGTTTTTAGAGGTCCTAGCAGAAGAAGACTTGATGCAGCAGTAATCTTTTCCTAGCAGTAGAGAACCTTTTGCCTCAGGAATGTACGTTTGCGTATGTTTGTATGAACTTTCATACTTGTTGCTTTGTTGTGTGAATGATCAATATGTATTTTGGTGGATATAATTACCCTGTGTTTGCAAGAAATATATGATTTAACCCTGTGCCCAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_255#0 TCATGATTCAGATTCAGATCATGATGATAACAAGAAGAAGAAGAAGAATTCTCGCTATGG 60 consensus_255#1 ------------------------------------------------------------ consensus_255#0 TTCAGAAGATGATTCTGAGGCTAAATATGATGAAAAGAAGCACAGTAAACACTTGAAGAA 120 consensus_255#1 ------------------------------------------------------------ consensus_255#0 TTCTCGCCATGATACAGATGATGATTCTGAGAGTGACCATAAGAATGCAAAGTGTAAAAA 180 consensus_255#1 ------------------------------------------------------------ consensus_255#0 GAGTTCTCGCCATGATTCAGAGTCTGATTCTGAGAGTGATCATAAGAATGCAAGGCGTGG 240 consensus_255#1 ------------------------------------------------------------ consensus_255#0 AAAGAGCTCTCGCCATGATTCAGAGTCTGATTCAGATGGTGATTATGGCAAGAAGACAAC 300 consensus_255#1 ------------------------------------------------------------ consensus_255#0 AAAACATGGCAAGAACGATCGTGATGAGAGAAAGAAAAGGCCTGCCACGATCTCTCGCCG 360 consensus_255#1 ------------------------------------------------------------ consensus_255#0 ACATGACTCAGAAGATGAAAAGCCTAGAAAGGGTAAGCGCATGGATGATTCAGATACTGA 420 consensus_255#1 ------------------------------------------------------------ consensus_255#0 CTCGGAGGGTGATGGTTCGTTCAGTGAGTCGGACAGCGACTATGATCGGAAGAAGAAGAA 480 consensus_255#1 ------------------------------------------------------------ consensus_255#0 ATCTACAAATAGTTCTCGCAATGAATCTAAAGATGATAAGCCCCGAAGAAAGGCTCCTAA 540 consensus_255#1 ------------------------------------------------------------ consensus_255#0 GGACAAGTATTCTGATGGCCCAGAAAGTGGCTCAGACAGTGATCATGGTGGAAAATCAAA 600 consensus_255#1 ------------------------------------------------------------ consensus_255#0 GTATTCAAAGATTTCTCGCCGTGATTCTGAACTTCAGTCCCGAAAGGATGCTGATAAACA 660 consensus_255#1 ------------------------------------------------------------ consensus_255#0 GGACCAGTACCGTGATAAATTGAAGAGTGAGTTTGCTAGCGATGGCTATGGAGAGAAGAA 720 consensus_255#1 ------------------------------------------------------------ consensus_255#0 ATCTGTTAAGATCCCATACAATGACTTGAAAGATGACAAGCCAAGCAGCAAGGTTGTTCG 780 consensus_255#1 ------------------------------------------------------------ consensus_255#0 GAAGGACCGGTACAGTGATGAATCAGAGACTGATTCAGAAACTTATGTTAAGAAAAAGAA 840 consensus_255#1 ------------------------------------------------------------ consensus_255#0 GAATCTTCCGAAGTCCTATCACCATAGTGATAAACCAGCACAAAGAGGTAAAGAAAAGGA 900 consensus_255#1 ------------------------------------------------------------ consensus_255#0 AGAGAACTCTGGAAAGAATGTTGATAAGCGCAAGAGGCATGATACTGATTCTGATTCAGA 960 consensus_255#1 ------------------------------------------------------------ consensus_255#0 TAGCCATGCTCGTGAAAGGAAAAGACACCTTGATGCACGGGCGAGTTTGGCTGCCCAAAA 1020 consensus_255#1 ------------------------------------------------------------ consensus_255#0 GAAAAGAAGTGTGACTAGCTCAAGTGAGAGTTCAGAGAGTTCAGATTACAGCAGTAGCAG 1080 consensus_255#1 ------------------------------------------------------------ consensus_255#0 TGATAGTGAATCAGATGTGAGTTCTGACAGCCGCGAGGATAGGAAATCAGCAAGACAGTT 1140 consensus_255#1 ------------------------------------------------------------ consensus_255#0 GAAGCATGATGAGTTAGAGAGAAAGAAAAGGAGTCAAGACGAGAAGAGAAAGGAGCTAGA 1200 consensus_255#1 ------------------------------------------------------------ consensus_255#0 GAAGCAAAAGCAGGAGGAAGAGAGAAAAGAGCTGGACAGGCAGAAGCAGAGGGAGGAAGA 1260 consensus_255#1 ------------------------------------------------------------ consensus_255#0 GAGAAAGGCTAAAGAGCTTGAGAAGCAGAAGCAGAGGGAGGAAGAGAGAAAGGCATTGGA 1320 consensus_255#1 ---------------------------------------GGGAAAAGAAAAGGC-TTGGG 20 ** * * ****** **** consensus_255#0 GAAGCAGAAGCAGGGGGAGAGGGACGGAGATAGATATGAGCGTGACCATGAGGGGAGGAA 1380 consensus_255#1 AAACCAAAAAC-GGGGAAGAGGGGGGAAAAAAATTATTAG-GTGCCCCTTGGGGGGAGAA 78 ** ** ** * **** ****** * * * * *** ** *** ** * **** *** consensus_255#0 AGGCGAAAATGATGTTGAAAGAGACTACAAAAGAAAAGTTGGAGAAGATAGGTATGATCC 1440 consensus_255#1 AGGC-AATATTTTTTTTAAAGGGGTCTCAAAAAAAATGT-GGAGATTATGGTTTTGTTCC 136 **** ** ** * ** **** * ***** *** ** ***** ** * * ** *** consensus_255#0 AAGCAGGAGGCAGGATGAGGATAGGTATGATCCAAACAGGAGACATGATGAAGATATGTA 1500 consensus_255#1 AA-CCGGGGCCATGTTTGGGTATGGTTTTTTTCCAACCGGGGCCCTTATGAATATGGGTT 195 ** * ** * ** * * ** *** * * * *** ** * * * ***** ** ** consensus_255#0 TGATCCAAATAGGAGGCATGAAGAACA-TGGTCGACGAAGAAATAGAGATTTTGATAGCC 1559 consensus_255#1 ATGTCCCAATTGGGGGCCTTAAACACAGTGGTCCA-AAAAAAAAAGAATTTTTAATACCT 254 *** *** ** *** * ** *** ***** * ** *** *** **** *** * consensus_255#0 GTGATCCGAAAAGGTCTAGACATGATGATTCTTATCATCATTCTCGAAGGGACTATGAAC 1619 consensus_255#1 GTT-TCCAAAAGGGTCTACACAGGATGTTTCTTATCCTCTTTCCAAAGGGGCCTATGAAA 313 ** *** *** ****** *** **** ******** ** *** * *** ******* consensus_255#0 AGCGTTATTCTAGAGATGAATATAGAGACAGGAGGCATCGTTGAA-TGCAAGTCATGTCC 1678 consensus_255#1 AG-GTTTTTCTAGAGTTGAATATAGAGCCGGGGGGT-TCGTTGAAATCCAAGTCATGTCA 371 ** *** ******** *********** * ** ** ******** * *********** consensus_255#0 ATCTCTGGTTTCTTCAAGCAGAAGAGGGATGCATCTTTACATGAACCGAGCAGATGATCG 1738 consensus_255#1 ATTTGGGGTTT-TTCAAGCAGAAAGGGGATGCTTCTTT-CATGAACCGAGCAGATGATCA 429 ** * ***** *********** ******* ***** ******************** consensus_255#0 ATGTCCTGCTCCCTCAAGTTTTTCAGAGTCCTACCAGAAGAAGACTTGATGCAGCAGTAA 1798 consensus_255#1 ATGTCTTGTTCCCTCAAGTTTTTAGAGGTCCTAGCAGAAGAAGACTTGATGCAGCAGTAA 489 ***** ** ************** ****** ************************** consensus_255#0 ATCTCTCCTAGCAGTAGAGAACCTTTTGCCTCAGGAATGTACGTTTGCTTATGTTTGTAT 1858 consensus_255#1 TCTTTTCCTAGCAGTAGAGAACCTTTTGCCTCAGGAATGTACGTTTGCGTATGTTTGTAT 549 * ******************************************* *********** consensus_255#0 GAACTTTCATACTTGTTGTTTTGTTGTGTGAATGATCAATATGTATTCTGGTGGATATAA 1918 consensus_255#1 GAACTTTCATACTTGTTGCTTTGTTGTGTGAATGATCAATATGTATTTTGGTGGATATAA 609 ****************** **************************** ************ consensus_255#0 TTACCTTGTGTCTGCAAGAAATATATGATTTAACACTGTGCCCATGTGGT---------- 1968 consensus_255#1 TTACCCTGTGTTTGCAAGAAATATATGATTTAACCCTGTGCCCAAAAAAAAAAAAAAAAA 669 ***** ***** ********************** ********* consensus_255#0 ------- consensus_255#1 AAAAAAA 676 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||