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Oryza sativa
cluster # 2571 cluster # 2571       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2571#0 length = 841 sequences # 1  
consensus_2571#1 length = 689 sequences # 1  

consensusID : consensus_2571#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 841
fasta sequence
                              [TGATGGTATGACAGAGAGGAATGTGGAACCTGATGTGGTTATTTACACTATCTTGATCGATGGGTATCGCCGTCTTGGAAAAATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAAGAAGGGGATCAGTCCCAATGTCACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAGTGGGGATTGGAGGAGTGCTTCTGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGCAGACGTCGTCACTTACAATGTGCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAAAGCTGTAAAGCTCTTGGATGAAATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTACAATACCATAATACAGGGGTTCTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAGAACCAGGATGGAAAAATGTCGGAAACGGGCAAATGTGGTTACGTACAATGTGTTCATCAAGTATTTCTGCCAGATAGGGAAGATGGATGAAGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGAGAAGTATGGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGGAGGTAAATGAAACAATGCTGGCAACTGGAGTACCCTGATTGNGCTCATAATGGAAATGGTCAGCTAGTATTCCCATGGCTTTTNAAGATGGGCCTGGCCCTTTGATTNTGGCCANTGAGCATCTAGT]

[+] EMBL CA764336             [TGATGGTATGACAGAGAGGAATGTGGAACCTGATGTGGTTATTTACACTATCTTGATCGATGGGTATCGCCGTCTTGGAAAAATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAAGAAGGGGATCAGTCCCAATGTCACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAGTGGGGATTGGAGGAGTGCTTCTGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGCAGACGTCGTCACTTACAATGTGCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAAAGCTGTAAAGCTCTTGGATGAAATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTACAATACCATAATACAGGGGTTCTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAGAACCAGGATGGAAAAATGTCGGAAACGGGCAAATGTGGTTACGTACAATGTGTTCATCAAGTATTTCTGCCAGATAGGGAAGATGGATGAAGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGAGAAGTATGGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGGAGGTAAATGAAACAATGCTGGCAACTGGAGTACCCTGATTGNGCTCATAATGGAAATGGTCAGCTAGTATTCCCATGGCTTTTNAAGATGGGCCTGGCCCTTTGATTNTGGCCANTGAGCATCTAGT]


>consensus_2571#0 TGATGGTATGACAGAGAGGAATGTGGAACCTGATGTGGTTATTTACACTATCTTGATCGA TGGGTATCGCCGTCTTGGAAAAATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAA GAAGGGGATCAGTCCCAATGTCACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAG TGGGGATTGGAGGAGTGCTTCTGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGC AGACGTCGTCACTTACAATGTGCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAA AGCTGTAAAGCTCTTGGATGAAATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTA CAATACCATAATACAGGGGTTCTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAG AACCAGGATGGAAAAATGTCGGAAACGGGCAAATGTGGTTACGTACAATGTGTTCATCAA GTATTTCTGCCAGATAGGGAAGATGGATGAAGCTAATGATCTACTCAATGAGATGTTGGA CAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAA AGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATC ATCCTGAGAAGTATGGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGGAGGTAA ATGAAACAATGCTGGCAACTGGAGTACCCTGATTGNGCTCATAATGGAAATGGTCAGCTA GTATTCCCATGGCTTTTNAAGATGGGCCTGGCCCTTTGATTNTGGCCANTGAGCATCTAG T



consensusID : consensus_2571#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence
                              [GCCGGGTCCGATAAGCTTGGCTANGTGAAGCCAGCCAAGGCAAGCGGGTACACCCCAGGATGTAAAAATGTCGGAACCGGCCAAATGTCGTACGCGACAATGTGTTCATCAAGTATTTCTGCCAGATAGGCAAGATGGATGAACGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGAGAAGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGAAGTAAATGAAACAATGCTGGCAAACTGGAGTACCTGATTGTGCTCATAATGGAGATGGTCAGCTAGTATTCACCATGGCTTTTGAAGATGGGCCTGGCCCCTTGATTCTGGCCAATTGAGCATCTAGTCTAGGTAAGACTAACGTACCAAAGTAACTGCAGATAGTTTACGGTCTCTTGTGTAAATTTCTTATCCCATCTATTGTTAATGCCCATACAAATGACAGAAGAGATTGCAATCTCAGCAATAGCAATGTCCTCACCTGTTACGAATGGACTAGAGTTAACATCTCTGTACGAATGATTCGAAAAAAAACAGCTTATATGAAATATTGAAATGCAAAAAAA]

[-] EMBL CA763009             [GCCGGGTCCGATAAGCTTGGCTANGTGAAGCCAGCCAAGGCAAGCGGGTACACCCCAGGATGTAAAAATGTCGGAACCGGCCAAATGTCGTACGCGACAATGTGTTCATCAAGTATTTCTGCCAGATAGGCAAGATGGATGAACGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGAGAAGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGAAGTAAATGAAACAATGCTGGCAAACTGGAGTACCTGATTGTGCTCATAATGGAGATGGTCAGCTAGTATTCACCATGGCTTTTGAAGATGGGCCTGGCCCCTTGATTCTGGCCAATTGAGCATCTAGTCTAGGTAAGACTAACGTACCAAAGTAACTGCAGATAGTTTACGGTCTCTTGTGTAAATTTCTTATCCCATCTATTGTTAATGCCCATACAAATGACAGAAGAGATTGCAATCTCAGCAATAGCAATGTCCTCACCTGTTACGAATGGACTAGAGTTAACATCTCTGTACGAATGATTCGAAAAAAAACAGCTTATATGAAATATTGAAATGCAAAAAAA]


>consensus_2571#1 GCCGGGTCCGATAAGCTTGGCTANGTGAAGCCAGCCAAGGCAAGCGGGTACACCCCAGGA TGTAAAAATGTCGGAACCGGCCAAATGTCGTACGCGACAATGTGTTCATCAAGTATTTCT GCCAGATAGGCAAGATGGATGAACGCTAATGATCTACTCAATGAGATGTTGGACAAATGT CTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTAT ACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGA GAAGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGAAGTAAATGAAACAATGCT GGCAAACTGGAGTACCTGATTGTGCTCATAATGGAGATGGTCAGCTAGTATTCACCATGG CTTTTGAAGATGGGCCTGGCCCCTTGATTCTGGCCAATTGAGCATCTAGTCTAGGTAAGA CTAACGTACCAAAGTAACTGCAGATAGTTTACGGTCTCTTGTGTAAATTTCTTATCCCAT CTATTGTTAATGCCCATACAAATGACAGAAGAGATTGCAATCTCAGCAATAGCAATGTCC TCACCTGTTACGAATGGACTAGAGTTAACATCTCTGTACGAATGATTCGAAAAAAAACAG CTTATATGAAATATTGAAATGCAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2571#0      TGATGGTATGACAGAGAGGAATGTGGAACCTGATGTGGTTATTTACACTATCTTGATCGA 60
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      TGGGTATCGCCGTCTTGGAAAAATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAA 120
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      GAAGGGGATCAGTCCCAATGTCACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAG 180
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      TGGGGATTGGAGGAGTGCTTCTGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGC 240
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      AGACGTCGTCACTTACAATGTGCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAA 300
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      AGCTGTAAAGCTCTTGGATGAAATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTA 360
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      CAATACCATAATACAGGGGTTCTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAG 420
consensus_2571#1      -------------GCCGGGTCCGATAAGCTTGGCTANGTGAAGCCAGCCAAGGCAAGCGG 47
                                      **** *  * *    **  *  * *** * *** * * **   *

consensus_2571#0      AA-----CCAGGATGGAAAAATGTCGGAAACGGGCAAATGTGGTTACGTACAATGTGTTC 475
consensus_2571#1      GTACACCCCAGGATGTAAAAATGTCGGAACCGGCCAAATGTCGTACGCGACAATGTGTTC 107
                             ******** ************* *** ******* **     ***********

consensus_2571#0      ATCAAGTATTTCTGCCAGATAGGGAAGATGGATGAA-GCTAATGATCTACTCAATGAGAT 534
consensus_2571#1      ATCAAGTATTTCTGCCAGATAGGCAAGATGGATGAACGCTAATGATCTACTCAATGAGAT 167
                      *********************** ************ ***********************

consensus_2571#0      GTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGAT 594
consensus_2571#1      GTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGAT 227
                      ************************************************************

consensus_2571#0      GGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCC 654
consensus_2571#1      GGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCC 287
                      ************************************************************

consensus_2571#0      AGCATCATCCTGAGAAGTATGGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGG 714
consensus_2571#1      AGCATCATCCTGAGAA-----GAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGG- 341
                      ****************     ************************************** 

consensus_2571#0      AGGTAAATGAAACAATGCTGGCAA-CTGGAGTACCCTGATTGNGCTCATAATGGAAATGG 773
consensus_2571#1      AAGTAAATGAAACAATGCTGGCAAACTGGAGTACC-TGATTGTGCTCATAATGGAGATGG 400
                      * ********************** ********** ****** ************ ****

consensus_2571#0      TCAGCTAGTATTC-CCATGGCTTTTNAAGATGGGCCTGGCCCTTTGATTNTGGCCANT-G 831
consensus_2571#1      TCAGCTAGTATTCACCATGGCTTTTGAAGATGGGCCTGGCCCCTTGATTCTGGCCAATTG 460
                      ************* *********** **************** ****** ****** * *

consensus_2571#0      AGCATCTAGT-------------------------------------------------- 841
consensus_2571#1      AGCATCTAGTCTAGGTAAGACTAACGTACCAAAGTAACTGCAGATAGTTTACGGTCTCTT 520
                      **********                                                  

consensus_2571#0      ------------------------------------------------------------
consensus_2571#1      GTGTAAATTTCTTATCCCATCTATTGTTAATGCCCATACAAATGACAGAAGAGATTGCAA 580
                                                                                  

consensus_2571#0      ------------------------------------------------------------
consensus_2571#1      TCTCAGCAATAGCAATGTCCTCACCTGTTACGAATGGACTAGAGTTAACATCTCTGTACG 640
                                                                                  

consensus_2571#0      -------------------------------------------------
consensus_2571#1      AATGATTCGAAAAAAAACAGCTTATATGAAATATTGAAATGCAAAAAAA 689
                                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)