These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 841 fasta sequence [TGATGGTATGACAGAGAGGAATGTGGAACCTGATGTGGTTATTTACACTATCTTGATCGATGGGTATCGCCGTCTTGGAAAAATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAAGAAGGGGATCAGTCCCAATGTCACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAGTGGGGATTGGAGGAGTGCTTCTGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGCAGACGTCGTCACTTACAATGTGCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAAAGCTGTAAAGCTCTTGGATGAAATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTACAATACCATAATACAGGGGTTCTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAGAACCAGGATGGAAAAATGTCGGAAACGGGCAAATGTGGTTACGTACAATGTGTTCATCAAGTATTTCTGCCAGATAGGGAAGATGGATGAAGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGAGAAGTATGGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGGAGGTAAATGAAACAATGCTGGCAACTGGAGTACCCTGATTGNGCTCATAATGGAAATGGTCAGCTAGTATTCCCATGGCTTTTNAAGATGGGCCTGGCCCTTTGATTNTGGCCANTGAGCATCTAGT] [+] EMBL CA764336 [TGATGGTATGACAGAGAGGAATGTGGAACCTGATGTGGTTATTTACACTATCTTGATCGATGGGTATCGCCGTCTTGGAAAAATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAAGAAGGGGATCAGTCCCAATGTCACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAGTGGGGATTGGAGGAGTGCTTCTGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGCAGACGTCGTCACTTACAATGTGCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAAAGCTGTAAAGCTCTTGGATGAAATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTACAATACCATAATACAGGGGTTCTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAGAACCAGGATGGAAAAATGTCGGAAACGGGCAAATGTGGTTACGTACAATGTGTTCATCAAGTATTTCTGCCAGATAGGGAAGATGGATGAAGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGAGAAGTATGGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGGAGGTAAATGAAACAATGCTGGCAACTGGAGTACCCTGATTGNGCTCATAATGGAAATGGTCAGCTAGTATTCCCATGGCTTTTNAAGATGGGCCTGGCCCTTTGATTNTGGCCANTGAGCATCTAGT] consensusID : consensus_2571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [GCCGGGTCCGATAAGCTTGGCTANGTGAAGCCAGCCAAGGCAAGCGGGTACACCCCAGGATGTAAAAATGTCGGAACCGGCCAAATGTCGTACGCGACAATGTGTTCATCAAGTATTTCTGCCAGATAGGCAAGATGGATGAACGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGAGAAGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGAAGTAAATGAAACAATGCTGGCAAACTGGAGTACCTGATTGTGCTCATAATGGAGATGGTCAGCTAGTATTCACCATGGCTTTTGAAGATGGGCCTGGCCCCTTGATTCTGGCCAATTGAGCATCTAGTCTAGGTAAGACTAACGTACCAAAGTAACTGCAGATAGTTTACGGTCTCTTGTGTAAATTTCTTATCCCATCTATTGTTAATGCCCATACAAATGACAGAAGAGATTGCAATCTCAGCAATAGCAATGTCCTCACCTGTTACGAATGGACTAGAGTTAACATCTCTGTACGAATGATTCGAAAAAAAACAGCTTATATGAAATATTGAAATGCAAAAAAA] [-] EMBL CA763009 [GCCGGGTCCGATAAGCTTGGCTANGTGAAGCCAGCCAAGGCAAGCGGGTACACCCCAGGATGTAAAAATGTCGGAACCGGCCAAATGTCGTACGCGACAATGTGTTCATCAAGTATTTCTGCCAGATAGGCAAGATGGATGAACGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGAGAAGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGAAGTAAATGAAACAATGCTGGCAAACTGGAGTACCTGATTGTGCTCATAATGGAGATGGTCAGCTAGTATTCACCATGGCTTTTGAAGATGGGCCTGGCCCCTTGATTCTGGCCAATTGAGCATCTAGTCTAGGTAAGACTAACGTACCAAAGTAACTGCAGATAGTTTACGGTCTCTTGTGTAAATTTCTTATCCCATCTATTGTTAATGCCCATACAAATGACAGAAGAGATTGCAATCTCAGCAATAGCAATGTCCTCACCTGTTACGAATGGACTAGAGTTAACATCTCTGTACGAATGATTCGAAAAAAAACAGCTTATATGAAATATTGAAATGCAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2571#0 TGATGGTATGACAGAGAGGAATGTGGAACCTGATGTGGTTATTTACACTATCTTGATCGA 60 consensus_2571#1 ------------------------------------------------------------ consensus_2571#0 TGGGTATCGCCGTCTTGGAAAAATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAA 120 consensus_2571#1 ------------------------------------------------------------ consensus_2571#0 GAAGGGGATCAGTCCCAATGTCACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAG 180 consensus_2571#1 ------------------------------------------------------------ consensus_2571#0 TGGGGATTGGAGGAGTGCTTCTGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGC 240 consensus_2571#1 ------------------------------------------------------------ consensus_2571#0 AGACGTCGTCACTTACAATGTGCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAA 300 consensus_2571#1 ------------------------------------------------------------ consensus_2571#0 AGCTGTAAAGCTCTTGGATGAAATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTA 360 consensus_2571#1 ------------------------------------------------------------ consensus_2571#0 CAATACCATAATACAGGGGTTCTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAG 420 consensus_2571#1 -------------GCCGGGTCCGATAAGCTTGGCTANGTGAAGCCAGCCAAGGCAAGCGG 47 **** * * * ** * * *** * *** * * ** * consensus_2571#0 AA-----CCAGGATGGAAAAATGTCGGAAACGGGCAAATGTGGTTACGTACAATGTGTTC 475 consensus_2571#1 GTACACCCCAGGATGTAAAAATGTCGGAACCGGCCAAATGTCGTACGCGACAATGTGTTC 107 ******** ************* *** ******* ** *********** consensus_2571#0 ATCAAGTATTTCTGCCAGATAGGGAAGATGGATGAA-GCTAATGATCTACTCAATGAGAT 534 consensus_2571#1 ATCAAGTATTTCTGCCAGATAGGCAAGATGGATGAACGCTAATGATCTACTCAATGAGAT 167 *********************** ************ *********************** consensus_2571#0 GTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGAT 594 consensus_2571#1 GTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGAT 227 ************************************************************ consensus_2571#0 GGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCC 654 consensus_2571#1 GGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCC 287 ************************************************************ consensus_2571#0 AGCATCATCCTGAGAAGTATGGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGG 714 consensus_2571#1 AGCATCATCCTGAGAA-----GAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGG- 341 **************** ************************************** consensus_2571#0 AGGTAAATGAAACAATGCTGGCAA-CTGGAGTACCCTGATTGNGCTCATAATGGAAATGG 773 consensus_2571#1 AAGTAAATGAAACAATGCTGGCAAACTGGAGTACC-TGATTGTGCTCATAATGGAGATGG 400 * ********************** ********** ****** ************ **** consensus_2571#0 TCAGCTAGTATTC-CCATGGCTTTTNAAGATGGGCCTGGCCCTTTGATTNTGGCCANT-G 831 consensus_2571#1 TCAGCTAGTATTCACCATGGCTTTTGAAGATGGGCCTGGCCCCTTGATTCTGGCCAATTG 460 ************* *********** **************** ****** ****** * * consensus_2571#0 AGCATCTAGT-------------------------------------------------- 841 consensus_2571#1 AGCATCTAGTCTAGGTAAGACTAACGTACCAAAGTAACTGCAGATAGTTTACGGTCTCTT 520 ********** consensus_2571#0 ------------------------------------------------------------ consensus_2571#1 GTGTAAATTTCTTATCCCATCTATTGTTAATGCCCATACAAATGACAGAAGAGATTGCAA 580 consensus_2571#0 ------------------------------------------------------------ consensus_2571#1 TCTCAGCAATAGCAATGTCCTCACCTGTTACGAATGGACTAGAGTTAACATCTCTGTACG 640 consensus_2571#0 ------------------------------------------------- consensus_2571#1 AATGATTCGAAAAAAAACAGCTTATATGAAATATTGAAATGCAAAAAAA 689 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||