Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2617 cluster # 2617       Sequences # 2       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2617#0 length = 1555 sequences # 2  
consensusID : consensus_2617#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1555
fasta sequence 
                              [AGAAAGCATCCCCGCACGCGGCCATGGCAATGCCATTGCGGGATCCAACAGACCGCGCTGCTATGTCCGCGCCGTTGCTCCCGCGTTCCGCCTTCGTCTCCTCCGCATCGTTCTCCTCCTTTTCGTCCATCGCCTCGTTCTCCTCCACCTCGTCGTCGTTCTCCGACCCGGCCGTCCCGTCGGATGTCGTCGAGGCGTTGCCGATGTCGAGGGACTCGTTCAAGGCGCTCGCCGTGCTGAGGGACCACCAGGGCTCGGTGTCGTCCCTCTCGCTCTGCGGGGAGTTCTTGCTCAGCGCGTCCACCGGCGCAGACATCGTCGCGTGGCAGCAGCCGGATCTCCGCCGCTTCGCGAGGTTCGGGCATGGGGAGGGGTCCGTCAAGGCGCTCGCCGCCGCGGGGGGCAGGGTGTTCTCCGCGCACCAGGACGGCCGCGTCCGCGTCTGGCGGGTGTCGCGGCGGTCGGAGAACGCGTTCAAGCTCGTCGCCGCGCTGCCCACCACCAGGGACTACCTGGGCAAGATCTTCCGCCACGCCAGCTACGTGCAGACACGCCGCAACCACCGCCGCCTCTGGATCGAGCACGCCGACAGCATCTCCTGCCTCGCCGTGCACGACGGCGTCGTCTACTCGGGCTCCTGGGACAAGACGCTCAAGGTCTGGCGCATCTCCGACCTCAAGTGCCTCGAGTCGATCCACGCCCACGACGACGCCATCAATGCCGTCGCCGCCGACAGCGGCACCATCTACTCCGCCTCCGCCGACGGCCACGTCAAGGCGTGGGGGAAAGGCAAGGCGGCGCACTTCCTCCAGGGCATCCTCATCTCCCGGGACGGCGTGTCGTGGAACGCCCTCGTGGCGAGCGCCGACGCCGGGGCTCGCCGCGTGTACGCCGCCGGGTCGGACGGGCACGTCGTCGGGTGGGACAGGGTAGGCGGCAGGGGCAGCCGCTGGAGCCTCTCCTGCGACGTGAAGGCGCACGACATGGCCGTGCTCTGCCTGTGCGTCGCCGGCGACCTTGTCTTCACGGGCTCCGCCGACAAGACCATCGGGCTGTGGCGCTGGCAGACGAGCGGCGACGGCGACGGCGCCGCCGCCGCCGCCCTCGCCAGGGTGGGCGTGATCAGAGGCCATGAGGGCCCCGTGAAATGCATCCAGGCGAGCTGGTGCAGGGTCAGCAATGGCTGCATGGTGTACAGTGGAGGGCTCGACAAGAGCATCCGAGTTTGGTGGGTGCCCAATGGCTGGAAGGCCAACGAGCAGAAGCAGCAGCAAGAAAATGACACGAAAGATCACAAGAACTGCGTGTTCTTGAGGTGAATCGTGTCAGGTCAGGTCAAAATGTGTTCTTGATTTGTGTTGTGTTTGTAGATCGTAGTTTGGATTGTTTGGTAGCACACTGCCTTGGTTGGGTTGATGATCTACTCTGATGGATATATTGGAGGATATGAATTAAGGAGTCATGAAGGTATTAGTTTTAGATTTGGGTGTAAATGGCTGTATACTTTTATACCTAATTCATACACATTTTGATTAAATGGAAATATCAGTAATAA]

[+] EMBL AK072248             [AGAAAGCATCCCCGCACGCGGCCATGGCAATGCCATTGCGGGATCCAACAGACCGCGCTGCTATGTCCGCGCCGTTGCTCCCGCGTTCCGCCTTCGTCTCCTCCGCATCGTTCTCCTCCTTTTCGTCCATCGCCTCGTTCTCCTCCACCTCGTCGTCGTTCTCCGACCCGGCCGTCCCGTCGGATGTCGTCGAGGCGTTGCCGATGTCGAGGGACTCGTTCAAGGCGCTCGCCGTGCTGAGGGACCACCAGGGCTCGGTGTCGTCCCTCTCGCTCTGCGGGGAGTTCTTGCTCAGCGCGTCCACCGGCGCAGACATCGTCGCGTGGCAGCAGCCGGATCTCCGCCGCTTCGCGAGGTTCGGGCATGGGGAGGGGTCCGTCAAGGCGCTCGCCGCCGCGGGGGGCAGGGTGTTCTCCGCGCACCAGGACGGCCGCGTCCGCGTCTGGCGGGTGTCGCGGCGGTCGGAGAACGCGTTCAAGCTCGTCGCCGCGCTGCCCACCACCAGGGACTACCTGGGCAAGATCTTCCGCCACGCCAGCTACGTGCAGACACGCCGCAACCACCGCCGCCTCTGGATCGAGCACGCCGACAGCATCTCCTGCCTCGCCGTGCACGACGGCGTCGTCTACTCGGGCTCCTGGGACAAGACGCTCAAGGTCTGGCGCATCTCCGACCTCAAGTGCCTCGAGTCGATCCACGCCCACGACGACGCCATCAATGCCGTCGCCGCCGACAGCGGCACCATCTACTCCGCCTCCGCCGACGGCCACGTCAAGGCGTGGGGGAAAGGCAAGGCGGCGCACTTCCTCCAGGGCATCCTCATCTCCCGGGACGGCGTGTCGTGGAACGCCCTCGTGGCGAGCGCCGACGCCGGGGCTCGCCGCGTGTACGCCGCCGGGTCGGACGGGCACGTCGTCGGGTGGGACAGGGTAGGCGGCAGGGGCAGCCGCTGGAGCCTCTCCTGCGACGTGAAGGCGCACGACATGGCCGTGCTCTGCCTGTGCGTCGCCGGCGACCTTGTCTTCACGGGCTCCGCCGACAAGACCATCGGGCTGTGGCGCTGGCAGACGAGCGGCGACGGCGACGGCGCCGCCGCCGCCGCCCTCGCCAGGGTGGGCGTGATCAGAGGCCATGAGGGCCCCGTGAAATGCATCCAGGCGAGCTGGTGCAGGGTCAGCAATGGCTGCATGGTGTACAGTGGAGGGCTCGACAAGAGCATCCGAGTTTGGTGGGTGCCCAATGGCTGGAAGGCCAACGAGCAGAAGCAGCAGCAAGAAAATGACACGAAAGATCACAAGAACTGCGTGTTCTTGAGGTGAATCGTGTCAGGTCAGGTCAAAATGTGTTCTTGATTTGTGTTGTGTTTGTAGATCGTAGTTTGGATTGTTTGGTAGCACACTGCCTTGGTTGGGTTGATGATCTACTCTGATGGATATATTGGAGGATATGAATTAAGGAGTCATGAAGGTATTAGTTTTAGATTTGGGTGTAAATGGCTGTATACTTTTATACCTAATTCATACACATTTTGATTAAATGGAAATATCAGTAATAA]
[+] EMBL AK099261             [AGAAAGCATCCCCGCACGCGGCCATGGCAATGCCATTGCGGGATCCAACAGACCGCGCTGCTATGTCCGCGCCGTTGCTCCCGCGTTCCGCCTTCGTCTCCTCCGCATCGTTCTCCTCCTTTTCGTCCATCGCCTCGTTCTCCTCCACCTCGTCGTCGTTCTCCGACCCGGCCGTCCCGTCGGATGTCGTCGAGGCGTTGCCGATGTCGAGGGACTCGTTCAAGGCGCTCGCCGTGCTGAGGGACCACCAGGGCTCGGTGTCGTCCCTCTCGCTCTGCGGGGAGTTCTTGCTCAGCGCGTCCACCGGCGCAGACATCGTCGCGTGGCAGCAGCCGGATCTCCGCCGCTTCGCGAGGTTCGGGCATGGGGAGGGGTCCGTCAAGGCGCTCGCCGCCGCGGGGGGCAGGGTGTTCTCCGCGCACCAGGACGGCCGCGTCCGCGTCTGGCGGGTGTCGCGGCGGTCGGAGAACGCGTTCAAGCTCGTCGCCGCGCTGCCCACCACCAGGGACTACCTGGGCAAGATCTTCCGCCACGCCAGCTACGTGCAGACACGCCGCAACCACCGCCGCCTCTGGATCGAGCACGCCGACAGCATCTCCTGCCTCGCCGTGCACGACGGCGTCGTCTACTCGGGCTCCTGGGACAAGACGCTCAAGGTCTGGCGCATCTCCGACCTCAAGTGCCTCGAGTCGATCCACGCCCACGACGACGCCATCAATGCCGTCGCCGCCGACAGCGGCACCATCTACTCCGCCTCCGCCGACGGCCACGTCAAGGCGTGGGGGAAAGGCAAGGCGGCGCACTTCCTCCAGGGCATCCTCATCTCCCGGGACGGCGTGTCGTGGAACGCCCTCGTGGCGAGCGCCGACGCCGGGGCTCGCCGCGTGTACGCCGCCGGGTCGGACGGGCACGTCGTCGGGTGGGACAGGGTAGGCGGCAGGGGCAGCCGCTGGAGCCTCTCCTGCGACGTGAAGGCGCACGACATGGCCGTGCTCTGCCTGTGCGTCGCCGGCGACCTTGTCTTCACGGGCTCCGCCGACAAGACCATCGGGCTGTGGCGCTGGCAGACGAGCGGCGACGGCGACGGCGCCGCCGCCGCCGCCCTCGCCAGGGTGGGCGTGATCAGAGGCCATGAGGGCCCCGTGAAATGCATCCAGGCGAGCTGGTGCAGGGTCAGCAATGGCTGCATGGTGTACAGTGGAGGGCTCGACAAGAGCATCCGAGTTTGGTGGGTGCCCAATGGCTGGAAGGCCAACGAGCAGAAGCAGCAGCAAGAAAATGACACGAAAGATCACAAGAACTGCGTGTTCTTGAGGTGAATCGTGTCAGGTCAGGTCAAAATGTGTTCTTGATTTGTGTTGTGTTTGTAGATCGTAGTTTGGATTGTTTGGTAGCACACTGCCTTGGTTGGGTTGATGATCTACTCTGATGGATATATTGGAGGATATGAATTAAGGAGTCATGAAGGTATTAGTTTTAGATTTGGGTGTAAATGGCTGTATACTTTTATACCTAATTCATACACATTTTGATTAAATGGAAATATCAGTAAT  ]




>consensus_2617#0
AGAAAGCATCCCCGCACGCGGCCATGGCAATGCCATTGCGGGATCCAACAGACCGCGCTG
CTATGTCCGCGCCGTTGCTCCCGCGTTCCGCCTTCGTCTCCTCCGCATCGTTCTCCTCCT
TTTCGTCCATCGCCTCGTTCTCCTCCACCTCGTCGTCGTTCTCCGACCCGGCCGTCCCGT
CGGATGTCGTCGAGGCGTTGCCGATGTCGAGGGACTCGTTCAAGGCGCTCGCCGTGCTGA
GGGACCACCAGGGCTCGGTGTCGTCCCTCTCGCTCTGCGGGGAGTTCTTGCTCAGCGCGT
CCACCGGCGCAGACATCGTCGCGTGGCAGCAGCCGGATCTCCGCCGCTTCGCGAGGTTCG
GGCATGGGGAGGGGTCCGTCAAGGCGCTCGCCGCCGCGGGGGGCAGGGTGTTCTCCGCGC
ACCAGGACGGCCGCGTCCGCGTCTGGCGGGTGTCGCGGCGGTCGGAGAACGCGTTCAAGC
TCGTCGCCGCGCTGCCCACCACCAGGGACTACCTGGGCAAGATCTTCCGCCACGCCAGCT
ACGTGCAGACACGCCGCAACCACCGCCGCCTCTGGATCGAGCACGCCGACAGCATCTCCT
GCCTCGCCGTGCACGACGGCGTCGTCTACTCGGGCTCCTGGGACAAGACGCTCAAGGTCT
GGCGCATCTCCGACCTCAAGTGCCTCGAGTCGATCCACGCCCACGACGACGCCATCAATG
CCGTCGCCGCCGACAGCGGCACCATCTACTCCGCCTCCGCCGACGGCCACGTCAAGGCGT
GGGGGAAAGGCAAGGCGGCGCACTTCCTCCAGGGCATCCTCATCTCCCGGGACGGCGTGT
CGTGGAACGCCCTCGTGGCGAGCGCCGACGCCGGGGCTCGCCGCGTGTACGCCGCCGGGT
CGGACGGGCACGTCGTCGGGTGGGACAGGGTAGGCGGCAGGGGCAGCCGCTGGAGCCTCT
CCTGCGACGTGAAGGCGCACGACATGGCCGTGCTCTGCCTGTGCGTCGCCGGCGACCTTG
TCTTCACGGGCTCCGCCGACAAGACCATCGGGCTGTGGCGCTGGCAGACGAGCGGCGACG
GCGACGGCGCCGCCGCCGCCGCCCTCGCCAGGGTGGGCGTGATCAGAGGCCATGAGGGCC
CCGTGAAATGCATCCAGGCGAGCTGGTGCAGGGTCAGCAATGGCTGCATGGTGTACAGTG
GAGGGCTCGACAAGAGCATCCGAGTTTGGTGGGTGCCCAATGGCTGGAAGGCCAACGAGC
AGAAGCAGCAGCAAGAAAATGACACGAAAGATCACAAGAACTGCGTGTTCTTGAGGTGAA
TCGTGTCAGGTCAGGTCAAAATGTGTTCTTGATTTGTGTTGTGTTTGTAGATCGTAGTTT
GGATTGTTTGGTAGCACACTGCCTTGGTTGGGTTGATGATCTACTCTGATGGATATATTG
GAGGATATGAATTAAGGAGTCATGAAGGTATTAGTTTTAGATTTGGGTGTAAATGGCTGT
ATACTTTTATACCTAATTCATACACATTTTGATTAAATGGAAATATCAGTAATAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)