These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 937 fasta sequence [GATAGTGTGCATTATGATGGAACCTTCATGCGTATATACATATAATCATTTACTGAGATATATATGTTCTGATGAGCATTGAGCTAAGTATACTCAACATGAATATAACCTGGCAGGCTAATTAATATAAATTCGGTGTTCTCACAATGTTGCATTGGAGCTATATGTATAGTTGCTAATAATTAATCCACCAATGTGGAAATGAGGATCCTGAGCTGGCATACAATTAATCTATCTTTTTTTTTCTACTTCGTGTAGTACACTAGTAAAAGTAGGCAGTGCTAGCTGGGAGTACTCCTCTTTCACAGGTCTTGTGTTTGTTTCGGGGTCGGGATAGAACCAATTCATGTGTCATATGGCAGGTAATGGTGAATTTTTCTAGGAAGAGGAGACAAGCAATGGCGTGGTTTCATATATGTATATAACAGATGTCACAGGTTTACTGTTCACGATTATGTCTGAATTGCCAGAAGTGCATGATCAGTACATGCCTGTAAGATTTGTCTCGTCATGACCTATTTATAGCTGTCATAGAAAAAAAAACTACAAGACAACGAAGGTACGTATGTTTGTACTGCATATTGTTAACAAGTTAATCAAGTTTACTTTTAGGCGTTATGGGGTACAGCTGTAGCTTCTTGTTGGTCTAGCATTGATCAACCATTCTTAGCGGTAGTCGGTTTGTTACTATACTAGCCCTTTTCTCAGTAGTGTGGGAAGGCGTCAGTGCGTAGTGGAGGTGTTTTTTTTTTTCTTTTCTGGACTATAACCTCCTAGTTGTAGTTCTGTAATTTTTTTTTCTTGTTACATCCAATGAAACTTCATATTGTCTAAGTGTCGGTTCATTGGAAGAAAACATCATCAAGTATACTTTTATGTTGTGAAATAGGAGTAGCAAAACTGAGGAAAATGTTCCTATCAGTACAAATAAGACTTC] [+] EMBL AK062294 [GATAGTGTGCATTATGATGGAACCTTCATGCGTATATACATATAATCATTTACTGAGATATATATGTTCTGATGAGCATTGAGCTAAGTATACTCAACATGAATATAACCTGGCAGGCTAATTAATATAAATTCGGTGTTCTCACAATGTTGCATTGGAGCTATATGTATAGTTGCTAATAATTAATCCACCAATGTGGAAATGAGGATCCTGAGCTGGCATACAATTAATCTATCTTTTTTTTTCTACTTCGTGTAGTACACTAGTAAAAGTAGGCAGTGCTAGCTGGGAGTACTCCTCTTTCACAGGTCTTGTGTTTGTTTCGGGGTCGGGATAGAACCAATTCATGTGTCATATGGCAGGTAATGGTGAATTTTTCTAGGAAGAGGAGACAAGCAATGGCGTGGTTTCATATATGTATATAACAGATGTCACAGGTTTACTGTTCACGATTATGTCTGAATTGCCAGAAGTGCATGATCAGTACATGCCTGTAAGATTTGTCTCGTCATGACCTATTTATAGCTGTCATAGAAAAAAAAACTACAAGACAACGAAGGTACGTATGTTTGTACTGCATATTGTTAACAAGTTAATCAAGTTTACTTTTAGGCGTTATGGGGTACAGCTGTAGCTTCTTGTTGGTCTAGCATTGATCAACCATTCTTAGCGGTAGTCGGTTTGTTACTATACTAGCCCTTTTCTCAGTAGTGTGGGAAGGCGTCAGTGCGTAGTGGAGGTGTTTTTTTTTTTCTTTTCTGGACTATAACCTCCTAGTTGTAGTTCTGTAATTTTTTTTTCTTGTTACATCCAATGAAACTTCATATTGTCTAAGTGTCGGTTCATTGGAAGAAAACATCATCAAGTATACTTTTATGTTGTGAAATAGGAGTAGCAAAACTGAGGAAAATGTTCCTATCAGTACAAATAAGACTTC] consensusID : consensus_264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [TTTTTTTTTTTTTCAGAAAATGATTATATGTATATACCCATGAAGGTTCCATCATAATGCACACTATCTTCTATATATGCAAAATCCTAGGCTACCTCCTAGATAGCTAAAGAATATAAATTACTTGTATATTGAGGATTCAGCTTGTGTTACACTGCTAGCTATTCAAAAAGCAGCATTAACATTTGGTCCCGAGCTTTTTTTTGTCTCCAATCACCGGGGTATACATTCATAGAATGTTTCAAAACTTGATTGGAATAGCACATGCAAGGAGATAAAATTGCAAACTTACCGCTGTCTACTCGCTAGACAAGATGATCAGTCGCATGTGTCCTGTATTAATGGATGAAGAAACAAAAGGGAGAAGACAACTACCAAAACGAATGAACAAATATAGATCGTGGATGGTATTTATGATATTACCTGTAATGCTTTATAGCATTTGTCCTTCTGAATTGAAAGAACAAATCTGCACAGATATTATATATAGACGGAGGTTTTATGTGCATCAAGGAAGAAATTAAATGTATGAGTAAAAGCTGTATATGTTCCTCATGAACTTCTTCCACACTTGAACAATAAACACATCANAATCTTCTCTGAAATCACGAGTTAATACCTTGAGAGTTTCGCTTGTGCGTCGTATATGTAAACTTAGGGAACAAGAAACAGTTGTTAGATCAACAATTTATC] [+] EMBL CA760585 [TTTTTTTTTTTTTCAGAAAATGATTATATGTATATACCCATGAAGGTTCCATCATAATGCACACTATCTTCTATATATGCAAAATCCTAGGCTACCTCCTAGATAGCTAAAGAATATAAATTACTTGTATATTGAGGATTCAGCTTGTGTTACACTGCTAGCTATTCAAAAAGCAGCATTAACATTTGGTCCCGAGCTTTTTTTTGTCTCCAATCACCGGGGTATACATTCATAGAATGTTTCAAAACTTGATTGGAATAGCACATGCAAGGAGATAAAATTGCAAACTTACCGCTGTCTACTCGCTAGACAAGATGATCAGTCGCATGTGTCCTGTATTAATGGATGAAGAAACAAAAGGGAGAAGACAACTACCAAAACGAATGAACAAATATAGATCGTGGATGGTATTTATGATATTACCTGTAATGCTTTATAGCATTTGTCCTTCTGAATTGAAAGAACAAATCTGCACAGATATTATATATAGACGGAGGTTTTATGTGCATCAAGGAAGAAATTAAATGTATGAGTAAAAGCTGTATATGTTCCTCATGAACTTCTTCCACACTTGAACAATAAACACATCANAATCTTCTCTGAAATCACGAGTTAATACCTTGAGAGTTTCGCTTGTGCGTCGTATATGTAAACTTAGGGAACAAGAAACAGTTGTTAGATCAACAATTTATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_264#0 GATAGTGTGCATTATGATGGAACCTTCATGCGTATATACATATAATCATTT-ACTGAGAT 59 consensus_264#1 --TTTTTTTTTTTTTCAGAAAATGATTATATGTATATACCCATGAAGGTTCCATCATAAT 58 * * * ** * * ** * ** ******** ** * ** * ** consensus_264#0 ATATATGTTCTGATGAGCATTGAGCTAAGTATACTCAACATGAATATAACCTGGCAGGCT 119 consensus_264#1 GCACACTATCTTCTATATAT---GCAAAAT---CCTA----GGCTACCTCCTAGATAGCT 108 * * *** * ** ** ** * * * * ** *** * *** consensus_264#0 AATTAATATAAATTCGGTGTTCTCACAATGTTGCATTGGAGCTATATGTATAGTTGCT-A 178 consensus_264#1 AAAGAATATAAATTACTTGTATATTGAGGATTCAGCTTGTGTTACACTGCTAGCTATTCA 168 ** ********** *** * ** * * * ** * *** * * * consensus_264#0 ATAATTAATCCACCAATGTGGAAATGAGGATCCTGAGCTGGCATACAATTAATCTATCTT 238 consensus_264#1 AAAAGCAGCATTAACATTTGGTCCCGAGCTTTTT---TTTGTCTCCAATCA-CCGGGGTA 224 * ** * ** *** *** * * * * * **** * * * consensus_264#0 TTTTTTTCTACTTCGTGTAGTACACTAGTAAAAGTAGGCAGTGCTAGCTGGGAGTACTCC 298 consensus_264#1 TACATTCATAGAATGTTTCAAAACTTGATTGGAATAGCACATGCAAGGAGATAAAATTGC 284 * ** ** ** * * * * * *** *** ** * * * * * consensus_264#0 TCTTTCACAGGTCTTGTGTTTGTTTCGGGGTCGGGATAGAACCAATTCATGTGTCATATG 358 consensus_264#1 AAACTTACCG-----CTGTCTACTCGCTAGACAAGAT-GATCAGTCGCATGTGTCCTGTA 338 * ** * *** * * * * *** ** * ******** * * consensus_264#0 GCAGGTAATGGTGAATTTTTCTAGGAAGAGGAGACAAGCAATGGCGTGGTTTCATATATG 418 consensus_264#1 TTAATGGATGAAGAAA----CAAAAGGGAGAAGACAACTACCAAAACGAATGAACAAATA 394 * *** *** * * *** ****** * * * * * ** consensus_264#0 TATATAACAGATGTCACAGGTT-TACTGTTCACGATTATGTCTGA-ATTGCCAGAAGTGC 476 consensus_264#1 TAGATCGTGGATGGTATTTATGATATTACCTGTAATGCTTTATAGCATTTGTCCTTCTGA 454 ** ** **** * * ** * ** * * * *** ** consensus_264#0 ATGATCAGTACATGCCTGTA-AGAT-TTGTCTCGTCATGACCTATTTATAGCTGTCATAG 534 consensus_264#1 ATTGAAAGAACAAATCTGCACAGATATTATATATAGACGGAGGTTTTATGTGCATCAAGG 514 ** ** *** *** * **** ** * * * * ***** *** * consensus_264#0 AAAAAAA-AACTACAAGACAACGAAGGTACGTATGTTTGTACTGCATATTGTTAACAAGT 593 consensus_264#1 AAGAAATTAAATGTATGAGTA-AAAGCTGTATATGTTCCTCATGAACTTCTTCCACACTT 573 ** *** ** * * ** * *** * ****** * ** * * * *** * consensus_264#0 TAATCAAGTTTACTTTTAGGCGTTATGGGGTACAGCTG--TAGCTTCTTGTTGGTCTAGC 651 consensus_264#1 GAACAATAAACACATCANAATCTTCTCTGAAATCACGAGTTAATACCTTGAGAGTTTCGC 633 ** * ** * ** * * * * ** **** ** * ** consensus_264#0 ------ATTGATCAACCATTCTTAGCGGTAGTCGGTTTGTTACTATACTAGCCCTTTTCT 705 consensus_264#1 TTGTGCGTCGTATATGTAAACTTAGGGAACAAGAAACAGTTGTTAGATCAACAATTTATC 693 * * * * ***** * *** ** * * * *** consensus_264#0 CAGTAGTGTGGGAAGGCGTCAGTGCGTAGTGGAGGTGTTTTTTTTTTTCTTTTCTGGACT 765 consensus_264#1 ------------------------------------------------------------ consensus_264#0 ATAACCTCCTAGTTGTAGTTCTGTAATTTTTTTTTCTTGTTACATCCAATGAAACTTCAT 825 consensus_264#1 ------------------------------------------------------------ consensus_264#0 ATTGTCTAAGTGTCGGTTCATTGGAAGAAAACATCATCAAGTATACTTTTATGTTGTGAA 885 consensus_264#1 ------------------------------------------------------------ consensus_264#0 ATAGGAGTAGCAAAACTGAGGAAAATGTTCCTATCAGTACAAATAAGACTTC 937 consensus_264#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||