These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2136 fasta sequence [GCGACACGCACCACCGTCTCCGCCTCCGCGCCGCCGCCGTCGTCTCCGCCGCCTCCGGTGGAATCCTCGCCGCGGCCCCGTCACACCTCATCCTCTTCGCTTGGCCTTCTCCGCATCCGGTTATTTTAGGTCGGAGAAGGCGGCGGATCCGCCGCTCGCCGGGCGGATCACGCTCCCTCATCATTGGTATCAGGGGCGGAGACGCGAGCGGTGAGCCTCCCCGCCGTTGGGAGAGATCTTCACTTGCCAAACTCAATTCTCAGCATGTCGTGGAGGCGGCTGGAGCTCGCCGCGCTCTGCGCCTACGCGCTGGGGTTCTACCTCGTCGTGATCCGGAAGTCGCTTCGCCTCTCTCATGATTACTCTGGGAGGTTGTACGGCCTACGAGCAGGCTCACTCGCTGGCCATCTGAACGACTTGTCCGATGCACAATGGAGAAATTTCCGGGGGAACTTACCTGTTCTTACCATTGTGATGGGTGCATTTCTGATGTTGGCGAATATGCTTCGCTACTGCTACAGCTTGAAGGGAAGAGGGGCCTCTTTGGTGTGGCTTCTCCTGTCTGTCACCTATTTATGCTATCTACATGGTGCTTGTGTTAGTTTCATTCTCCTAATAGCATTGATTAACTACTCCATAGTGAAGCTATTTTCTCGATATAAATATTGTGTTGGGCTCATTTGGAGCTTCAACTTAGCTGTCCTTATACTTAACCGAGTCTATGAAGGCTATTCATTCTCATTGTTTGGGCAACAGCTTGCTTTTCTAGACAATCATCGGGGTACATTTCGGTGGCACATTTGCTTCAATTTTGTTGTATTACGAATGATAAGCTTTGGATGCGATTACTGCTGGTCACTCCGGTCTTCTCAGTTTGATCATAAGAAGCATATGCAGCGATGCCAAGTTTGTTATTCTGGCAAAACATGCTACTTTGCTTTGCAGGAGAGAGCGCTCATTGGTGACAAATACACATTACTAACATATTTATGCTACTTGACATATGCTCCACTCTACATCGCTGGACCTATTGTAAGCTACAATGCATTTGCAGCCCAGTTAGATGCACCCCAGAAAAATTATTCAGTTGCACAAATATCTTGGTATGGGGTGAGGTGGATCCTAAGTTTCCTTCTTATGGAAGCTATGACACATTTTTTCCACTACAACGCCTTTGTAGTTAGCCGATTATGGCAGCAATTATCGCCATTTGAGATCTTCATCATTAGTTATGGGGTGCTGAACTTTATGTGGTTGAAATTCTTCCTGATTTGGCGCTACTTCAGGTTTTGGTCACTGGTAGGAGGAGTTGAGACGCCTGAAAATATGCCAAGGTGTATAAATAATTGTCATGATCTGGAGAGTTTCTGGAAAAGCTGGCATGCTTCTTTTAACAGATGGTTGGTCAGGTATCTGACATTCCTCTTGGGGGTGCTCAAAGAAAACTACTTAGTATCTGGGTGGTATTCACGTTTGTAGCAGTTTGGCATGACCTGGAATGGAAACTTATTTCATGGGCATGGTTAACATGCTTATTTTTCGTCCCTGAAATATTGGTCAAGTCTCTATCCAACAAGTTCCAGCCAAGAAGTGCCCTTGGGTTGTTCATTCACCGGGAGTTAAGTGCAATTGCTGGTGCTGTGACAATAAGCTGCCTTATGGTGGCAAACCTTGTCGGTTATGTTGTAGGACCCTCCGGCATTAAACTTCTCATGTCACGAATGCTTGGGAAGGATGCCCTTCCTGTCCTTGCCTTCATATTTATCTCATTCTATGTGGGAGTTAAGCTTATGTTTCATATACGTGACGCACATGAGAATCAAGGGTGATAACTGATAAGTCGACGGGGAAGAACTCCCACTGTAAAATGTAGACAAGCAGCTGCGATGAGACGCTGTCAAGACTCAAGACAAATAGGCTTACCTCTTCTTTTATGGGATTTGTTTGACACGAACGAAAAGCTCCTCTGACCGCCGAGCTTTGGCTCTTCTGTAATGTAGGGCTTATTGATTGGGGTAGTGAAGATAATAGAGCACAAATGGAAATGGTACTACGAGCTCTGTTTTTAAGAGTGGAAATGCAGGGCACACTCCATTGGATTGAAGGAATTTCAATTCTCAGACAATTTTCCTATGA] [+] EMBL AK067112 [GCGACACGCACCACCGTCTCCGCCTCCGCGCCGCCGCCGTCGTCTCCGCCGCCTCCGGTGGAATCCTCGCCGCGGCCCCGTCACACCTCATCCTCTTCGCTTGGCCTTCTCCGCATCCGGTTATTTTAGGTCGGAGAAGGCGGCGGATCCGCCGCTCGCCGGGCGGATCACGCTCCCTCATCATTGGTATCAGGGGCGGAGACGCGAGCGGTGAGCCTCCCCGCCGTTGGGAGAGATCTTCACTTGCCAAACTCAATTCTCAGCATGTCGTGGAGGCGGCTGGAGCTCGCCGCGCTCTGCGCCTACGCGCTGGGGTTCTACCTCGTCGTGATCCGGAAGTCGCTTCGCCTCTCTCATGATTACTCTGGGAGGTTGTACGGCCTACGAGCAGGCTCACTCGCTGGCCATCTGAACGACTTGTCCGATGCACAATGGAGAAATTTCCGGGGGAACTTACCTGTTCTTACCATTGTGATGGGTGCATTTCTGATGTTGGCGAATATGCTTCGCTACTGCTACAGCTTGAAGGGAAGAGGGGCCTCTTTGGTGTGGCTTCTCCTGTCTGTCACCTATTTATGCTATCTACATGGTGCTTGTGTTAGTTTCATTCTCCTAATAGCATTGATTAACTACTCCATAGTGAAGCTATTTTCTCGATATAAATATTGTGTTGGGCTCATTTGGAGCTTCAACTTAGCTGTCCTTATACTTAACCGAGTCTATGAAGGCTATTCATTCTCATTGTTTGGGCAACAGCTTGCTTTTCTAGACAATCATCGGGGTACATTTCGGTGGCACATTTGCTTCAATTTTGTTGTATTACGAATGATAAGCTTTGGATGCGATTACTGCTGGTCACTCCGGTCTTCTCAGTTTGATCATAAGAAGCATATGCAGCGATGCCAAGTTTGTTATTCTGGCAAAACATGCTACTTTGCTTTGCAGGAGAGAGCGCTCATTGGTGACAAATACACATTACTAACATATTTATGCTACTTGACATATGCTCCACTCTACATCGCTGGACCTATTGTAAGCTACAATGCATTTGCAGCCCAGTTAGATGCACCCCAGAAAAATTATTCAGTTGCACAAATATCTTGGTATGGGGTGAGGTGGATCCTAAGTTTCCTTCTTATGGAAGCTATGACACATTTTTTCCACTACAACGCCTTTGTAGTTAGCCGATTATGGCAGCAATTATCGCCATTTGAGATCTTCATCATTAGTTATGGGGTGCTGAACTTTATGTGGTTGAAATTCTTCCTGATTTGGCGCTACTTCAGGTTTTGGTCACTGGTAGGAGGAGTTGAGACGCCTGAAAATATGCCAAGGTGTATAAATAATTGTCATGATCTGGAGAGTTTCTGGAAAAGCTGGCATGCTTCTTTTAACAGATGGTTGGTCAGGTATCTGACATTCCTCTTGGGGGTGCTCAAAGAAAACTACTTAGTATCTGGGTGGTATTCACGTTTGTAGCAGTTTGGCATGACCTGGAATGGAAACTTATTTCATGGGCATGGTTAACATGCTTATTTTTCGTCCCTGAAATATTGGTCAAGTCTCTATCCAACAAGTTCCAGCCAAGAAGTGCCCTTGGGTTGTTCATTCACCGGGAGTTAAGTGCAATTGCTGGTGCTGTGACAATAAGCTGCCTTATGGTGGCAAACCTTGTCGGTTATGTTGTAGGACCCTCCGGCATTAAACTTCTCATGTCACGAATGCTTGGGAAGGATGCCCTTCCTGTCCTTGCCTTCATATTTATCTCATTCTATGTGGGAGTTAAGCTTATGTTTCATATACGTGACGCACATGAGAATCAAGGGTGATAACTGATAAGTCGACGGGGAAGAACTCCCACTGTAAAATGTAGACAAGCAGCTGCGATGAGACGCTGTCAAGACTCAAGACAAATAGGCTTACCTCTTCTTTTATGGGATTTGTTTGACACGAACGAAAAGCTCCTCTGACCGCCGAGCTTTGGCTCTTCTGTAATGTAGGGCTTATTGATTGGGGTAGTGAAGATAATAGAGCACAAATGGAAATGGTACTACGAGCTCTGTTTTTAAGAGTGGAAATGCAGGGCACACTCCATTGGATTGAAGGAATTTCAATTCTCAGACAATTTTCCTATGA] consensusID : consensus_2658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [TCTTGGGGGTGCTCAAAGAAAACTACTTAGTATCTGGGTGGTATTCACGTTTGTAGCAGTTTGGCATGACCTGAAATGGAAACTTATTTCATGGGCATGGTCAACATGCTTATATTTCGTCCCTGAAATATGGGTCAAGTCTCTATCCAACAAGTTCCAGCCAAGAAGTGCCCTTGGGTTGTTCCTTCCCCGGGAGTTAAGTGCAATTGCTGGTGCTGTGACAATAAGCTGCCTTATGGTGGCAAACCTTGTCGGTTATGTTGTAGGACCCTCCGGCATTAAACTTCTCATGTCACGAATGCTTGGGAAGGATGCCCTTCCTGTCCCTGCCTTCATATTTATCTCCTTCTATGTGGGAGTTAAGCTTATGTTTCATATACGTGACGCCCATAAGAATCAAGGGTGATAACTGATAAGTCAACGGGGAAGAACTCCCCCTGTAAAATGTAGACAAGCAGCTGCGATGAGACGCTGTCAAGACTCAAGACAAATAGGCTTACCTCTTCTTTTATGGGATTTGTTTGACCCGAACAAAAAGCTCCTCTGACCGCCGAGCTTTGGCTTTTTTGTAACGTAGGGCTTATTGATTGGGGTAGTGAAGATAATAGAGCCCAAATGGAAATGGTACTTCGAGCTCTGTTTTTAAGAGTGGAAATGCAGGGCCCCCTCCCTTGGATTGAAGGAATTTCAATTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA763333 [TCTTGGGGGTGCTCAAAGAAAACTACTTAGTATCTGGGTGGTATTCACGTTTGTAGCAGTTTGGCATGACCTGAAATGGAAACTTATTTCATGGGCATGGTCAACATGCTTATATTTCGTCCCTGAAATATGGGTCAAGTCTCTATCCAACAAGTTCCAGCCAAGAAGTGCCCTTGGGTTGTTCCTTCCCCGGGAGTTAAGTGCAATTGCTGGTGCTGTGACAATAAGCTGCCTTATGGTGGCAAACCTTGTCGGTTATGTTGTAGGACCCTCCGGCATTAAACTTCTCATGTCACGAATGCTTGGGAAGGATGCCCTTCCTGTCCCTGCCTTCATATTTATCTCCTTCTATGTGGGAGTTAAGCTTATGTTTCATATACGTGACGCCCATAAGAATCAAGGGTGATAACTGATAAGTCAACGGGGAAGAACTCCCCCTGTAAAATGTAGACAAGCAGCTGCGATGAGACGCTGTCAAGACTCAAGACAAATAGGCTTACCTCTTCTTTTATGGGATTTGTTTGACCCGAACAAAAAGCTCCTCTGACCGCCGAGCTTTGGCTTTTTTGTAACGTAGGGCTTATTGATTGGGGTAGTGAAGATAATAGAGCCCAAATGGAAATGGTACTTCGAGCTCTGTTTTTAAGAGTGGAAATGCAGGGCCCCCTCCCTTGGATTGAAGGAATTTCAATTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2658#0 GCGACACGCACCACCGTCTCCGCCTCCGCGCCGCCGCCGTCGTCTCCGCCGCCTCCGGTG 60 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 GAATCCTCGCCGCGGCCCCGTCACACCTCATCCTCTTCGCTTGGCCTTCTCCGCATCCGG 120 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 TTATTTTAGGTCGGAGAAGGCGGCGGATCCGCCGCTCGCCGGGCGGATCACGCTCCCTCA 180 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 TCATTGGTATCAGGGGCGGAGACGCGAGCGGTGAGCCTCCCCGCCGTTGGGAGAGATCTT 240 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 CACTTGCCAAACTCAATTCTCAGCATGTCGTGGAGGCGGCTGGAGCTCGCCGCGCTCTGC 300 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 GCCTACGCGCTGGGGTTCTACCTCGTCGTGATCCGGAAGTCGCTTCGCCTCTCTCATGAT 360 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 TACTCTGGGAGGTTGTACGGCCTACGAGCAGGCTCACTCGCTGGCCATCTGAACGACTTG 420 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 TCCGATGCACAATGGAGAAATTTCCGGGGGAACTTACCTGTTCTTACCATTGTGATGGGT 480 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 GCATTTCTGATGTTGGCGAATATGCTTCGCTACTGCTACAGCTTGAAGGGAAGAGGGGCC 540 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 TCTTTGGTGTGGCTTCTCCTGTCTGTCACCTATTTATGCTATCTACATGGTGCTTGTGTT 600 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 AGTTTCATTCTCCTAATAGCATTGATTAACTACTCCATAGTGAAGCTATTTTCTCGATAT 660 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 AAATATTGTGTTGGGCTCATTTGGAGCTTCAACTTAGCTGTCCTTATACTTAACCGAGTC 720 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 TATGAAGGCTATTCATTCTCATTGTTTGGGCAACAGCTTGCTTTTCTAGACAATCATCGG 780 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 GGTACATTTCGGTGGCACATTTGCTTCAATTTTGTTGTATTACGAATGATAAGCTTTGGA 840 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 TGCGATTACTGCTGGTCACTCCGGTCTTCTCAGTTTGATCATAAGAAGCATATGCAGCGA 900 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 TGCCAAGTTTGTTATTCTGGCAAAACATGCTACTTTGCTTTGCAGGAGAGAGCGCTCATT 960 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 GGTGACAAATACACATTACTAACATATTTATGCTACTTGACATATGCTCCACTCTACATC 1020 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 GCTGGACCTATTGTAAGCTACAATGCATTTGCAGCCCAGTTAGATGCACCCCAGAAAAAT 1080 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 TATTCAGTTGCACAAATATCTTGGTATGGGGTGAGGTGGATCCTAAGTTTCCTTCTTATG 1140 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 GAAGCTATGACACATTTTTTCCACTACAACGCCTTTGTAGTTAGCCGATTATGGCAGCAA 1200 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 TTATCGCCATTTGAGATCTTCATCATTAGTTATGGGGTGCTGAACTTTATGTGGTTGAAA 1260 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 TTCTTCCTGATTTGGCGCTACTTCAGGTTTTGGTCACTGGTAGGAGGAGTTGAGACGCCT 1320 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 GAAAATATGCCAAGGTGTATAAATAATTGTCATGATCTGGAGAGTTTCTGGAAAAGCTGG 1380 consensus_2658#1 ------------------------------------------------------------ consensus_2658#0 CATGCTTCTTTTAACAGATGGTTGGTCAGGTATCTGACATTCCTCTTGGGGGTGCTCAAA 1440 consensus_2658#1 -------------------------------------------TCTTGGGGGTGCTCAAA 17 ***************** consensus_2658#0 GAAAACTACTTAGTATCTGGGTGGTATTCACGTTTGTAGCAGTTTGGCATGACCTGGAAT 1500 consensus_2658#1 GAAAACTACTTAGTATCTGGGTGGTATTCACGTTTGTAGCAGTTTGGCATGACCTGAAAT 77 ******************************************************** *** consensus_2658#0 GGAAACTTATTTCATGGGCATGGTTAACATGCTTATTTTTCGTCCCTGAAATATTGGTCA 1560 consensus_2658#1 GGAAACTTATTTCATGGGCATGGTCAACATGCTTATATTTCGTCCCTGAAATATGGGTCA 137 ************************ *********** ***************** ***** consensus_2658#0 AGTCTCTATCCAACAAGTTCCAGCCAAGAAGTGCCCTTGGGTTGTTCATTCACCGGGAGT 1620 consensus_2658#1 AGTCTCTATCCAACAAGTTCCAGCCAAGAAGTGCCCTTGGGTTGTTCCTTCCCCGGGAGT 197 *********************************************** *** ******** consensus_2658#0 TAAGTGCAATTGCTGGTGCTGTGACAATAAGCTGCCTTATGGTGGCAAACCTTGTCGGTT 1680 consensus_2658#1 TAAGTGCAATTGCTGGTGCTGTGACAATAAGCTGCCTTATGGTGGCAAACCTTGTCGGTT 257 ************************************************************ consensus_2658#0 ATGTTGTAGGACCCTCCGGCATTAAACTTCTCATGTCACGAATGCTTGGGAAGGATGCCC 1740 consensus_2658#1 ATGTTGTAGGACCCTCCGGCATTAAACTTCTCATGTCACGAATGCTTGGGAAGGATGCCC 317 ************************************************************ consensus_2658#0 TTCCTGTCCTTGCCTTCATATTTATCTCATTCTATGTGGGAGTTAAGCTTATGTTTCATA 1800 consensus_2658#1 TTCCTGTCCCTGCCTTCATATTTATCTCCTTCTATGTGGGAGTTAAGCTTATGTTTCATA 377 ********* ****************** ******************************* consensus_2658#0 TACGTGACGCACATGAGAATCAAGGGTGATAACTGATAAGTCGACGGGGAAGAACTCCCA 1860 consensus_2658#1 TACGTGACGCCCATAAGAATCAAGGGTGATAACTGATAAGTCAACGGGGAAGAACTCCCC 437 ********** *** *************************** **************** consensus_2658#0 CTGTAAAATGTAGACAAGCAGCTGCGATGAGACGCTGTCAAGACTCAAGACAAATAGGCT 1920 consensus_2658#1 CTGTAAAATGTAGACAAGCAGCTGCGATGAGACGCTGTCAAGACTCAAGACAAATAGGCT 497 ************************************************************ consensus_2658#0 TACCTCTTCTTTTATGGGATTTGTTTGACACGAACGAAAAGCTCCTCTGACCGCCGAGCT 1980 consensus_2658#1 TACCTCTTCTTTTATGGGATTTGTTTGACCCGAACAAAAAGCTCCTCTGACCGCCGAGCT 557 ***************************** ***** ************************ consensus_2658#0 TTGGCTCTTCTGTAATGTAGGGCTTATTGATTGGGGTAGTGAAGATAATAGAGCACAAAT 2040 consensus_2658#1 TTGGCTTTTTTGTAACGTAGGGCTTATTGATTGGGGTAGTGAAGATAATAGAGCCCAAAT 617 ****** ** ***** ************************************** ***** consensus_2658#0 GGAAATGGTACTACGAGCTCTGTTTTTAAGAGTGGAAATGCAGGGCACACTCCATTGGAT 2100 consensus_2658#1 GGAAATGGTACTTCGAGCTCTGTTTTTAAGAGTGGAAATGCAGGGCCCCCTCCCTTGGAT 677 ************ ********************************* * **** ****** consensus_2658#0 TGAAGGAATTTCAATTCTCAGACAATTTTCCTATGA--------------- 2136 consensus_2658#1 TGAAGGAATTTCAATTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 728 ******************* * ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||