These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1113 fasta sequence [ATATGTGAGCAACGCTAAGAAAATTTTAGTTCATCAGTTGGCTCCTTCCCATAGTACGTGATTGTTGGAAAGCAAATACTAGTAATCTAGGTCGATCAAATTAAACATAATCGAATCAAAGAACCTGTTTACAGGAAAAAGGTAAGCTTTGCTCCCCTGAACTTTAGCTATGGGAATTTTTGTAACATAGGTTCTGATCCCATCTATCATCCCATAAATTTTCAACTTAGAACACAGCTTGTACGACAGGAAGCAAAAATGGCAGTTGTTTTTAGGGATTAAAACAAGCTATCACTTCTTTTGGTGAAATAGTTCCGCTGTAGAAAAATGGACTGATTAACTTAGTTATGCGACATGAGCATCTGCATGTATAGTTTCTCGTTTTCTGGAGAAATCTCCAGTTCAATTGAACCTATGAAAACTCGATTTCTCTATGTTCACGAAGAAATTATTAAAGGTAGGGATAGGCATGATCTCTTTCTCACCAAATTTCTAAGACCAAACTCAACTTCGTTTGGAAAGTTAAAATAAGACAAATTTTGCATGAAACTTCCCTATCACTATCCGTGCAAAGTTTGTATTTCTTGTATCTTGCAAGCAAATTTGAATTTGGTCTTGAAATTTTGTGGAGATATAGACCATGCCTATACCTACCACTAATATTTATGGATGAGAGTCATCTCGCTGGGATGTACTAGAAAGTAGGGGTGGTCTATTTTGTTTATTTTGAATGAATGGGTTTATTGTTGGCTTATTGTAAATTGCATTTCAACTTATTCCATTTTTATTCTCCCGTGTTGCATTTTGAGCATATTATGTCGTTATGGTTGCTCTATTGTTTTTTCTAAATTGGGTCATTTCCCTTCTATTTTCTCCGTCCCATAATATCACAAAATTTGTTGGACATGAGACTTGTTCAGATTCGCCAATCCTAGGTTGCTATGGGACAGGGAGAGTATAAAATATTGAACTTTACATCATCACAATCAGAAGCATAAAATCGCATCAGGGAGAGAGGTGAAGGGGAGTAAGAGGCTGACGAGTGGGTCCCACACCTTTTCCACCCGAGTTTGCCATGAGGGCAAAAGTGGCAAATAGTTAAGACCATCTCTT] [+] EMBL AK062968 [ATATGTGAGCAACGCTAAGAAAATTTTAGTTCATCAGTTGGCTCCTTCCCATAGTACGTGATTGTTGGAAAGCAAATACTAGTAATCTAGGTCGATCAAATTAAACATAATCGAATCAAAGAACCTGTTTACAGGAAAAAGGTAAGCTTTGCTCCCCTGAACTTTAGCTATGGGAATTTTTGTAACATAGGTTCTGATCCCATCTATCATCCCATAAATTTTCAACTTAGAACACAGCTTGTACGACAGGAAGCAAAAATGGCAGTTGTTTTTAGGGATTAAAACAAGCTATCACTTCTTTTGGTGAAATAGTTCCGCTGTAGAAAAATGGACTGATTAACTTAGTTATGCGACATGAGCATCTGCATGTATAGTTTCTCGTTTTCTGGAGAAATCTCCAGTTCAATTGAACCTATGAAAACTCGATTTCTCTATGTTCACGAAGAAATTATTAAAGGTAGGGATAGGCATGATCTCTTTCTCACCAAATTTCTAAGACCAAACTCAACTTCGTTTGGAAAGTTAAAATAAGACAAATTTTGCATGAAACTTCCCTATCACTATCCGTGCAAAGTTTGTATTTCTTGTATCTTGCAAGCAAATTTGAATTTGGTCTTGAAATTTTGTGGAGATATAGACCATGCCTATACCTACCACTAATATTTATGGATGAGAGTCATCTCGCTGGGATGTACTAGAAAGTAGGGGTGGTCTATTTTGTTTATTTTGAATGAATGGGTTTATTGTTGGCTTATTGTAAATTGCATTTCAACTTATTCCATTTTTATTCTCCCGTGTTGCATTTTGAGCATATTATGTCGTTATGGTTGCTCTATTGTTTTTTCTAAATTGGGTCATTTCCCTTCTATTTTCTCCGTCCCATAATATCACAAAATTTGTTGGACATGAGACTTGTTCAGATTCGCCAATCCTAGGTTGCTATGGGACAGGGAGAGTATAAAATATTGAACTTTACATCATCACAATCAGAAGCATAAAATCGCATCAGGGAGAGAGGTGAAGGGGAGTAAGAGGCTGACGAGTGGGTCCCACACCTTTTCCACCCGAGTTTGCCATGAGGGCAAAAGTGGCAAATAGTTAAGACCATCTCTT] consensusID : consensus_2669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 778 fasta sequence [TGGCTCCCCCCGAATCTTGTTCTGCTATATATAAACTAAATTTCAGCTTATTATTTGGTCTTTTCTTTATTTGCGGGATGCATTTGAGAGCATATATTGTCATTGTAGTTCCCGTTAGATCTGGTTACAGGGACGGCTGTTAAGGAGTTACAGGCCAGATGATGATTGTATTTTTTTTGTTTGTTAATATATGAGCAACTCTAATAAAATTTTAGTTCATTAGTTGGATCCTTCCCATAGTACATGATTGTAGGAAAGCAAATACTAGTAATCTAGGTCGATCAAATTAAACATAATCGAATGAAAGAACCTGTTTACAGGAAAAAGGTAAACTTTGCTCCCCTGAACTTTAGCTATGGGAATTTTTGCAACATAGGTTCTGATCCCGTCTATCATCCCATAAACTTTCAACTTAGAACACAGCTTGTACGACAGGAAGCAAAAATGCCAGTTGTTTTTAGGGATTAAAACAAGCTATATCACTTCTTTTAGTGAAATAGTTTCGCAGTAGAAAAATGGACTGATTTTTAACTTAATTATGGGGCATGAGCATCCGCATGTATAGTTTCTCCTTTTCTGGTGGACAGTTGTTATTCTTTTTTCTGGAGAAATCTCCAGTTCAATTAAACCTATGAAAACTCAATTTTTCTATGTTCACGAAGAAATTATTAAAGGTAGGGATAGGCATGGTCTCTTTCTCACCAAATTTCTAAGACCAAACTCAACTTCGTTTGGAAGATTANAAGAAGACAAATTCTGCATGAAACTTTCCTATCAC] [+] EMBL CB680314 [TGGCTCCCCCCGAATCTTGTTCTGCTATATATAAACTAAATTTCAGCTTATTATTTGGTCTTTTCTTTATTTGCGGGATGCATTTGAGAGCATATATTGTCATTGTAGTTCCCGTTAGATCTGGTTACAGGGACGGCTGTTAAGGAGTTACAGGCCAGATGATGATTGTATTTTTTTTGTTTGTTAATATATGAGCAACTCTAATAAAATTTTAGTTCATTAGTTGGATCCTTCCCATAGTACATGATTGTAGGAAAGCAAATACTAGTAATCTAGGTCGATCAAATTAAACATAATCGAATGAAAGAACCTGTTTACAGGAAAAAGGTAAACTTTGCTCCCCTGAACTTTAGCTATGGGAATTTTTGCAACATAGGTTCTGATCCCGTCTATCATCCCATAAACTTTCAACTTAGAACACAGCTTGTACGACAGGAAGCAAAAATGCCAGTTGTTTTTAGGGATTAAAACAAGCTATATCACTTCTTTTAGTGAAATAGTTTCGCAGTAGAAAAATGGACTGATTTTTAACTTAATTATGGGGCATGAGCATCCGCATGTATAGTTTCTCCTTTTCTGGTGGACAGTTGTTATTCTTTTTTCTGGAGAAATCTCCAGTTCAATTAAACCTATGAAAACTCAATTTTTCTATGTTCACGAAGAAATTATTAAAGGTAGGGATAGGCATGGTCTCTTTCTCACCAAATTTCTAAGACCAAACTCAACTTCGTTTGGAAGATTANAAGAAGACAAATTCTGCATGAAACTTTCCTATCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2669#0 ------------------------------------------------------------ consensus_2669#1 TGGCTCCCCCCGAATCTTGTTCTGCTATATATAAACTAAATTTCAGCTTATTATTTGGTC 60 consensus_2669#0 ------------------------------------------------------------ consensus_2669#1 TTTTCTTTATTTGCGGGATGCATTTGAGAGCATATATTGTCATTGTAGTTCCCGTTAGAT 120 consensus_2669#0 ------------------------------------------------------------ consensus_2669#1 CTGGTTACAGGGACGGCTGTTAAGGAGTTACAGGCCAGATGATGATTGTATTTTTTTTGT 180 consensus_2669#0 ------ATATGTGAGCAACGCTAAGAAAATTTTAGTTCATCAGTTGGCTCCTTCCCATAG 54 consensus_2669#1 TTGTTAATATATGAGCAACTCTAATAAAATTTTAGTTCATTAGTTGGATCCTTCCCATAG 240 **** ******** **** *************** ****** ************ consensus_2669#0 TACGTGATTGTTGGAAAGCAAATACTAGTAATCTAGGTCGATCAAATTAAACATAATCGA 114 consensus_2669#1 TACATGATTGTAGGAAAGCAAATACTAGTAATCTAGGTCGATCAAATTAAACATAATCGA 300 *** ******* ************************************************ consensus_2669#0 ATCAAAGAACCTGTTTACAGGAAAAAGGTAAGCTTTGCTCCCCTGAACTTTAGCTATGGG 174 consensus_2669#1 ATGAAAGAACCTGTTTACAGGAAAAAGGTAAACTTTGCTCCCCTGAACTTTAGCTATGGG 360 ** **************************** **************************** consensus_2669#0 AATTTTTGTAACATAGGTTCTGATCCCATCTATCATCCCATAAATTTTCAACTTAGAACA 234 consensus_2669#1 AATTTTTGCAACATAGGTTCTGATCCCGTCTATCATCCCATAAACTTTCAACTTAGAACA 420 ******** ****************** **************** *************** consensus_2669#0 CAGCTTGTACGACAGGAAGCAAAAATGGCAGTTGTTTTTAGGGATTAAAACAAGCTAT-- 292 consensus_2669#1 CAGCTTGTACGACAGGAAGCAAAAATGCCAGTTGTTTTTAGGGATTAAAACAAGCTATAT 480 *************************** ****************************** consensus_2669#0 CACTTCTTTTGGTGAAATAGTTCCGCTGTAGAAAAATGGACTGATT---AACTTAGTTAT 349 consensus_2669#1 CACTTCTTTTAGTGAAATAGTTTCGCAGTAGAAAAATGGACTGATTTTTAACTTAATTAT 540 ********** *********** *** ******************* ****** **** consensus_2669#0 GCGACATGAGCATCTGCATGTATAGTTTCTCGTTTTCTGG-------------------- 389 consensus_2669#1 GGGGCATGAGCATCCGCATGTATAGTTTCTCCTTTTCTGGTGGACAGTTGTTATTCTTTT 600 * * ********** **************** ******** consensus_2669#0 ------AGAAATCTCCAGTTCAATTGAACCTATGAAAACTCGATTTCTCTATGTTCACGA 443 consensus_2669#1 TTCTGGAGAAATCTCCAGTTCAATTAAACCTATGAAAACTCAATTTTTCTATGTTCACGA 660 ******************* *************** **** ************* consensus_2669#0 AGAAATTATTAAAGGTAGGGATAGGCATGATCTCTTTCTCACCAAATTTCTAAGACCAAA 503 consensus_2669#1 AGAAATTATTAAAGGTAGGGATAGGCATGGTCTCTTTCTCACCAAATTTCTAAGACCAAA 720 ***************************** ****************************** consensus_2669#0 CTCAACTTCGTTTGGAAAGTTAAAATAAGACAAATTTTGCATGAAACTTCCCTATCACTA 563 consensus_2669#1 CTCAACTTCGTTTGGAAGATTANAAGAAGACAAATTCTGCATGAAACTTTCCTATCAC-- 778 ***************** *** ** ********** ************ ******** consensus_2669#0 TCCGTGCAAAGTTTGTATTTCTTGTATCTTGCAAGCAAATTTGAATTTGGTCTTGAAATT 623 consensus_2669#1 ------------------------------------------------------------ consensus_2669#0 TTGTGGAGATATAGACCATGCCTATACCTACCACTAATATTTATGGATGAGAGTCATCTC 683 consensus_2669#1 ------------------------------------------------------------ consensus_2669#0 GCTGGGATGTACTAGAAAGTAGGGGTGGTCTATTTTGTTTATTTTGAATGAATGGGTTTA 743 consensus_2669#1 ------------------------------------------------------------ consensus_2669#0 TTGTTGGCTTATTGTAAATTGCATTTCAACTTATTCCATTTTTATTCTCCCGTGTTGCAT 803 consensus_2669#1 ------------------------------------------------------------ consensus_2669#0 TTTGAGCATATTATGTCGTTATGGTTGCTCTATTGTTTTTTCTAAATTGGGTCATTTCCC 863 consensus_2669#1 ------------------------------------------------------------ consensus_2669#0 TTCTATTTTCTCCGTCCCATAATATCACAAAATTTGTTGGACATGAGACTTGTTCAGATT 923 consensus_2669#1 ------------------------------------------------------------ consensus_2669#0 CGCCAATCCTAGGTTGCTATGGGACAGGGAGAGTATAAAATATTGAACTTTACATCATCA 983 consensus_2669#1 ------------------------------------------------------------ consensus_2669#0 CAATCAGAAGCATAAAATCGCATCAGGGAGAGAGGTGAAGGGGAGTAAGAGGCTGACGAG 1043 consensus_2669#1 ------------------------------------------------------------ consensus_2669#0 TGGGTCCCACACCTTTTCCACCCGAGTTTGCCATGAGGGCAAAAGTGGCAAATAGTTAAG 1103 consensus_2669#1 ------------------------------------------------------------ consensus_2669#0 ACCATCTCTT 1113 consensus_2669#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||