These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 736 fasta sequence [AATCAGGACAGTTTTGGCCATCTCTAGTGAATCAGATTATTGGATACATCGTCTCAAAAAAAAAAGATTATTGGATACATGCCACAATAAATTTACTACTTTGGAAAATATAGCTTACTAGTTACAATTCTCTATTTATAACCATTCCATTGCAACACTCGTGAAATTAGATCTATGCCATGTTATACACTTGATACATGTTTTGAATCTTTTTTGTGTAATATTTTTTTTTGTACTCCTGCCAATCCTCTCTTAACCATAGACCCAAATCCCAGCAACCGAAGCTCCAAATTCCCCAAATCCCGGCAGTAGCGATGCGCGGCCTGGCGACGACGATGACCTTAGCGCCAACTTGCGTGCTATCCGAGCTGATCCAGCACCGGTGGCGGTGAGCTCAGCTCAAGCAGATCTAGTGGAGACGACGGTATCGGGTCTGGTGTTGAGCTACGACGTGCGGTCTGACAGAGGTGACATGGCCAACGGTGACAAGAAGCGTAGCTGCACGTAAGGTGCAGGGTATCACCGTATTATCTATCACCCGTCTGTCTCATCACATCGCTCTAGTAAGAGACAAACACAAGAAGGCAAATGGGTGTTGGCCGGACAGCCTATCTTCCAGAGCCCCTGAACTGATCAAGTGCCGCTCCACTGCTCTGACGAAGTCGTCCATGATTTCATCTGACGCTGCAAAATGCTGCACTATTATTGGCTCAAATACAGCTCTTACGCGCAAGGC] [+] EMBL CB669699 [AATCAGGACAGTTTTGGCCATCTCTAGTGAATCAGATTATTGGATACATCGTCTCAAAAAAAAAAGATTATTGGATACATGCCACAATAAATTTACTACTTTGGAAAATATAGCTTACTAGTTACAATTCTCTATTTATAACCATTCCATTGCAACACTCGTGAAATTAGATCTATGCCATGTTATACACTTGATACATGTTTTGAATCTTTTTTGTGTAATATTTTTTTTTGTACTCCTGCCAATCCTCTCTTAACCATAGACCCAAATCCCAGCAACCGAAGCTCCAAATTCCCCAAATCCCGGCAGTAGCGATGCGCGGCCTGGCGACGACGATGACCTTAGCGCCAACTTGCGTGCTATCCGAGCTGATCCAGCACCGGTGGCGGTGAGCTCAGCTCAAGCAGATCTAGTGGAGACGACGGTATCGGGTCTGGTGTTGAGCTACGACGTGCGGTCTGACAGAGGTGACATGGCCAACGGTGACAAGAAGCGTAGCTGCACGTAAGGTGCAGGGTATCACCGTATTATCTATCACCCGTCTGTCTCATCACATCGCTCTAGTAAGAGACAAACACAAGAAGGCAAATGGGTGTTGGCCGGACAGCCTATCTTCCAGAGCCCCTGAACTGATCAAGTGCCGCTCCACTGCTCTGACGAAGTCGTCCATGATTTCATCTGACGCTGCAAAATGCTGCACTATTATTGGCTCAAATACAGCTCTTACGCGCAAGGC] consensusID : consensus_2695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [TTTTTTTTTTTTTATTTTTTTAAATAAGATGAAGAGTCAAACCTTATATTAAAAAACTAAAAAATAGAGTCTTTGTGAGATGGAAAGAGTAAGAGTTAGTAGTACATTACATAGCAATCCTACCGTAAGGTGCAGGGTATCACCGTATTATCTATCACCCGTCTGTCTCATCACATCGCTCTAGTAAGAGACAAACACAAGAAGGCAAATGGGTGTTGGCCGGACAGCCTAGCTTTCAGAGCCCCTGAACTGATCAAGTGCCNGCTCACTGCTCTGACGAAGTCGTCCATGATTTCATCTGACGCTGCAAAATGCTGCACTATTATTGGCTCAAATACAGCTCTTACGCGCAGGGCTACCATCTTTAAATCGAGCAAGCTTTGCCCGTGCCGCATACGGAATGGGATAATATTTTGTGACCCCAAAGGAACCCTCCCCTCTAGAGGGGGGAACCTCCTGGCCCAAGGGCCACAAGGAATGGAAAAGGGCAAGTTTTTTTTTGGGAAACCCCCTTAAGGGCTGGCCTTAAGGCCCCCCCGGGGCCCAGGGGGAAATTCTCAGGCGGTGGTGCGAGGGTTGACAACAGGAAAACAATTTGGCCCCGGGAAAACTCTGGCCCCAGCGTAAAAGGGAGAAACCTTTTAAAGG] [+] EMBL CA763396 [TTTTTTTTTTTTTATTTTTTTAAATAAGATGAAGAGTCAAACCTTATATTAAAAAACTAAAAAATAGAGTCTTTGTGAGATGGAAAGAGTAAGAGTTAGTAGTACATTACATAGCAATCCTACCGTAAGGTGCAGGGTATCACCGTATTATCTATCACCCGTCTGTCTCATCACATCGCTCTAGTAAGAGACAAACACAAGAAGGCAAATGGGTGTTGGCCGGACAGCCTAGCTTTCAGAGCCCCTGAACTGATCAAGTGCCNGCTCACTGCTCTGACGAAGTCGTCCATGATTTCATCTGACGCTGCAAAATGCTGCACTATTATTGGCTCAAATACAGCTCTTACGCGCAGGGCTACCATCTTTAAATCGAGCAAGCTTTGCCCGTGCCGCATACGGAATGGGATAATATTTTGTGACCCCAAAGGAACCCTCCCCTCTAGAGGGGGGAACCTCCTGGCCCAAGGGCCACAAGGAATGGAAAAGGGCAAGTTTTTTTTTGGGAAACCCCCTTAAGGGCTGGCCTTAAGGCCCCCCCGGGGCCCAGGGGGAAATTCTCAGGCGGTGGTGCGAGGGTTGACAACAGGAAAACAATTTGGCCCCGGGAAAACTCTGGCCCCAGCGTAAAAGGGAGAAACCTTTTAAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2695#0 AATCAGGACAGTTTTGGCCATCTCTAGTGAATCAGATTATTGGATACATCGTCTCAAAAA 60 consensus_2695#1 --------------------TTTTTTTTTTTTTATTTTTTTAAATAAGATG----AAGAG 36 * * * * * * ** ** *** * ** * consensus_2695#0 AAAAAGATTAT-TGGATACATGCCACAATAAATTTACTACTTTGGAAAATATAGCTTACT 119 consensus_2695#1 TCAAACCTTATATTAAAAAACTAAAAAATAGAGTCTTTG---TGAGATGGAAAGAGTAAG 93 *** **** * * * * * **** * * * ** * * ** ** consensus_2695#0 AGTTACAATTCTCTATTTATAACCATTCCATTGCAACACTCGTGAAATTAGATCTATGCC 179 consensus_2695#1 AGTTAGTAGTACAT-TACATAGCAATCCTACCGTAAGGTGCAGGGTATCAC-CGTATTAT 151 ***** * * * * *** * ** * * * ** * * ** * *** consensus_2695#0 ATGTTATACACTTGATACATGTTTTGAATCTTTTTTGTGTAATATTTTTTTTTGTACTCC 239 consensus_2695#1 CTATCACCCGTCTGTCTCAT----CACATCGCTCTAGTAAGAGACAAACACAAGAA---- 203 * * * * ** *** *** * * ** * * * * consensus_2695#0 TGCCAATCCTCTCTTAACCATAGACCCAAATCCCAGCAACCGAAGCTCCAAATTCCCCAA 299 consensus_2695#1 -GGCAAATGGGTGTTGGCCGGA--------------CAGCCTAGCTTTCAGAGCCCCTGA 248 * *** * ** ** * ** ** * * ** * *** * consensus_2695#0 ATCCCGGCAGTAGCGATGCGCGGCCTGGCGACGACGATGACCTTAGCGCCAACTTGCGTG 359 consensus_2695#1 ACTGATCAAGTGCCNGCTCACTGCTC--TGACGAAGTCGTCCATGATTTCATCTGACGC- 305 * *** * * * ** ***** * * ** * ** ** ** consensus_2695#0 CTATCCGAGCTGATCCAGCACCGGTGGCGGTGAGCTCAGCTCAAGCAGATCTAGTGGAGA 419 consensus_2695#1 ---TGCAAAATGCTGCACTATTATTGGCT-CAAATACAGCTCTTACGC-----GCAGGGC 356 * * * ** * ** * **** * ****** * * * * consensus_2695#0 CGACGGTATCGGGTCTGGTGTTGAGCTACGAC-GTGCGGTCTGACAGAGGTGACATGGCC 478 consensus_2695#1 TACCATCTTTAAATCGAGCA---AGCTTTGCCCGTGCCGCAT-ACGGAA-TGGGATAATA 411 * * ** * **** * * **** * * ** ** ** ** consensus_2695#0 AACGGTGACAAGAAGCGTAGCTGCACGTAAGGTGCAGGGTATCACCGTATTATCTATCAC 538 consensus_2695#1 TTTTGTGACCCCAAAGGAACCCTCCCCTCTAGAGGGGGGAACCTCC----------TGGC 461 ***** ** * * * * * * * * *** * * ** * * consensus_2695#0 CCGTCTGTCTCATCACATCGCTCTAGTAAGAGACAAACACAAGAAGGCAAAT-GGGTGTT 597 consensus_2695#1 CCAAGGGCCACAAGGAATGGAAAAGGGCAAGTTTTTTTTTGGGAAACCCCCTTAAGGGCT 521 ** * * ** ** * * * *** * * * * * consensus_2695#0 GGCCGGACAGCCTATCTTCCAGAGCCCCTG---AACTGATCAAGTGCCGCTCCACTGCTC 654 consensus_2695#1 GGCCTTAAGGCC---CCCCCGGGGCCCAGGGGGAAATTCTCAGGCGGTGGTGCGAGGGT- 577 **** * *** * ** * **** * ** * *** * * * * * * * consensus_2695#0 TGACGAAGTCGTCCATGATTTCATCTGACGCTGCAAAATGCTGCACTATTATTGGCTCAA 714 consensus_2695#1 TGAC-AACAGGAAAACAATTTGGCCC----CGGGAAAACTCTGGCCCCAGCGTAAAAGGG 632 **** ** * * **** * * * **** *** * * consensus_2695#0 ATACAGCTCTTACGCGCAAGGC 736 consensus_2695#1 AGAAACCTTTTAAAGG------ 648 * * * ** *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||