These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 820 fasta sequence [GCGCCGCCGCCTCCTCTCGCGCGGGCGCTGTACCGCCCCAGCCGTCGACACGGGCGCGGCGCTCCGGAGCCTGCAGCCGTCGTCGCGCCGCCAGGCGCCTCCAACCGTCCGCCGGCCGGCGCTAGCGCCCTCCGTCGCCAGCACGCCGTCCGCCGCCACCGATTCCCCTGCCGGCTGCCGACTACAGACCATGGCTTCGTTCTCCTCCCCGGTAAGCTCCGACAGCGACGACGCAAGTTGCTAGAGTGAGGGATGGAGAACGGGGAGATCGAGGGGGCAGCGGACGACGGGGTGCCGGTGCCCGCGCCGCCCAACGGCAGGAGGTATCGCCCCGTCGGCTCCAGCGATCGCGCCGTCATCCAGATGACCTCCATGGAGCCCGGCTCCTCCTCCTCTACCGCTGTGGCAGCCGTCAGTGGCATCACGCCCCAGCCACCAAGGAATCTAACGGTGGATCCAAGCATGCAAGAAGATCACACTGTTTCACAAGGGGATTCAAAGCTTGAGCTTTTTGGTTTTGACTCTCTTGTAAATATTTTGGGCCTCAAGAGCATGACAGGAGAACAGATTCAGGCCCCTTCCAGTCCTAGGGACGGTGAGGATGTTGCAATTACGATTGGACGCCCAAAGGAAACTGGACCCAAGTTTGGTACCATGATGGGTGTCTTTGTCCCATGCTTGCAGAATATATTGGGAATCATTTATTATATCCGTTTTACATGGATTGTACGTATGGCAGGTGTATGGCAGTCGCTTGTTTTAGTCTCGTTCTGTGGTGCATGCACATTTTTAACTGGAATATCATTAAGTGCCATTGCAA] [+] EMBL CB649599 [GCGCCGCCGCCTCCTCTCGCGCGGGCGCTGTACCGCCCCAGCCGTCGACACGGGCGCGGCGCTCCGGAGCCTGCAGCCGTCGTCGCGCCGCCAGGCGCCTCCAACCGTCCGCCGGCCGGCGCTAGCGCCCTCCGTCGCCAGCACGCCGTCCGCCGCCACCGATTCCCCTGCCGGCTGCCGACTACAGACCATGGCTTCGTTCTCCTCCCCGGTAAGCTCCGACAGCGACGACGCAAGTTGCTAGAGTGAGGGATGGAGAACGGGGAGATCGAGGGGGCAGCGGACGACGGGGTGCCGGTGCCCGCGCCGCCCAACGGCAGGAGGTATCGCCCCGTCGGCTCCAGCGATCGCGCCGTCATCCAGATGACCTCCATGGAGCCCGGCTCCTCCTCCTCTACCGCTGTGGCAGCCGTCAGTGGCATCACGCCCCAGCCACCAAGGAATCTAACGGTGGATCCAAGCATGCAAGAAGATCACACTGTTTCACAAGGGGATTCAAAGCTTGAGCTTTTTGGTTTTGACTCTCTTGTAAATATTTTGGGCCTCAAGAGCATGACAGGAGAACAGATTCAGGCCCCTTCCAGTCCTAGGGACGGTGAGGATGTTGCAATTACGATTGGACGCCCAAAGGAAACTGGACCCAAGTTTGGTACCATGATGGGTGTCTTTGTCCCATGCTTGCAGAATATATTGGGAATCATTTATTATATCCGTTTTACATGGATTGTACGTATGGCAGGTGTATGGCAGTCGCTTGTTTTAGTCTCGTTCTGTGGTGCATGCACATTTTTAACTGGAATATCATTAAGTGCCATTGCAA] consensusID : consensus_274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence [TCCAGATCCAGACGCAGACCGCTCCGCCACACCGGCCACCAGGCGCGCGCGCCGCCGCCTCCTCTCGCGCGGGCGCTGTACCGCCCCAGCCGTCGACACGGGCGCGGCGCTCCGGAGCCTGCAGCCGTCGTCGCGCCGCCAGGCGCCTCCAACCGTCCGCCGGCCGGCGCTAGCGCCCTCCGTCGCCAGCACGCCGTCCGCCGCCACCGATTCCCCTGCCGGCTGCCGACTACAGACCATGGCTTCGTTCTCCTCCCCGGTAAGCTCCGACAGCGACGACGCAAGGTGAGCACATGCTACAATCCCTAGTCCCTTCTCTGCTGGTGTGCGTCGCGGCGGTGTGGATCTGGATCACGCTGGCCGTGGAGGGGGTTCTCTCTTTGCAGGAGGTGGCGCTAAACCCTATATCTCACTGTGCGTTGTAGTTGCTAGAGTGAGGGATGGAGAACGGGGAGATCGAGGGGGCAGCGGACGACGGGGTGCCGGTGCCCGCGCCGCCCAACGGCAGGAGGTATCGCCCCGTCGGCTCCAGCGATCGCGCCGTCATCCAGATGACCTCCATGGAGCCCGGCTCCTCCTCCTCTACCGCTGTGGCAGCCGTCAGTGGCATCACGCCCCAGCCACCAAGGTATATGGAAGCTTCGCTTCAAATTTTGGAGATCGAATTTTAGCAATATTCTCTTCTAGGGGGAGTAGACTAAAACACTTGTACTGCTTGAATTAGTATACCATTGCTTGTGCAAATCCGATCGTGCATTGTCTTGCTCGTGC] [+] EMBL AK108337 [TCCAGATCCAGACGCAGACCGCTCCGCCACACCGGCCACCAGGCGCGCGCGCCGCCGCCTCCTCTCGCGCGGGCGCTGTACCGCCCCAGCCGTCGACACGGGCGCGGCGCTCCGGAGCCTGCAGCCGTCGTCGCGCCGCCAGGCGCCTCCAACCGTCCGCCGGCCGGCGCTAGCGCCCTCCGTCGCCAGCACGCCGTCCGCCGCCACCGATTCCCCTGCCGGCTGCCGACTACAGACCATGGCTTCGTTCTCCTCCCCGGTAAGCTCCGACAGCGACGACGCAAGGTGAGCACATGCTACAATCCCTAGTCCCTTCTCTGCTGGTGTGCGTCGCGGCGGTGTGGATCTGGATCACGCTGGCCGTGGAGGGGGTTCTCTCTTTGCAGGAGGTGGCGCTAAACCCTATATCTCACTGTGCGTTGTAGTTGCTAGAGTGAGGGATGGAGAACGGGGAGATCGAGGGGGCAGCGGACGACGGGGTGCCGGTGCCCGCGCCGCCCAACGGCAGGAGGTATCGCCCCGTCGGCTCCAGCGATCGCGCCGTCATCCAGATGACCTCCATGGAGCCCGGCTCCTCCTCCTCTACCGCTGTGGCAGCCGTCAGTGGCATCACGCCCCAGCCACCAAGGTATATGGAAGCTTCGCTTCAAATTTTGGAGATCGAATTTTAGCAATATTCTCTTCTAGGGGGAGTAGACTAAAACACTTGTACTGCTTGAATTAGTATACCATTGCTTGTGCAAATCCGATCGTGCATTGTCTTGCTCGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_274#0 ------------------------------------------------GCGCCGCCGCCT 12 consensus_274#1 TCCAGATCCAGACGCAGACCGCTCCGCCACACCGGCCACCAGGCGCGCGCGCCGCCGCCT 60 ************ consensus_274#0 CCTCTCGCGCGGGCGCTGTACCGCCCCAGCCGTCGACACGGGCGCGGCGCTCCGGAGCCT 72 consensus_274#1 CCTCTCGCGCGGGCGCTGTACCGCCCCAGCCGTCGACACGGGCGCGGCGCTCCGGAGCCT 120 ************************************************************ consensus_274#0 GCAGCCGTCGTCGCGCCGCCAGGCGCCTCCAACCGTCCGCCGGCCGGCGCTAGCGCCCTC 132 consensus_274#1 GCAGCCGTCGTCGCGCCGCCAGGCGCCTCCAACCGTCCGCCGGCCGGCGCTAGCGCCCTC 180 ************************************************************ consensus_274#0 CGTCGCCAGCACGCCGTCCGCCGCCACCGATTCCCCTGCCGGCTGCCGACTACAGACCAT 192 consensus_274#1 CGTCGCCAGCACGCCGTCCGCCGCCACCGATTCCCCTGCCGGCTGCCGACTACAGACCAT 240 ************************************************************ consensus_274#0 GGCTTCGTTCTCCTCCCCGGTAAGCTCCGACAGCGACGACGCAAGTTGCTAGAGTGAGGG 252 consensus_274#1 GGCTTCGTTCTCCTCCCCGGTAAGCTCCGACAGCGACGACGCAAGGTG------------ 288 ********************************************* ** consensus_274#0 ATGGAGAACGGGGAGATCGAGGGGGCAGCGGACGACGGGGTGCCGGTGCCCGCGCCGCCC 312 consensus_274#1 ----------AGCACATGCTACAATCCCTAGTCCCTTCTCTGCTGGTGT--GCGTCGC-- 334 * * ** * * * *** **** *** *** consensus_274#0 AACGGCAGGAGGTATCGCCCCGTCGGCTCCAGCGATCGCGCCGTCATCCAGATGACCTCC 372 consensus_274#1 GGCGGTGTGGATCTGGATCACGCTGGCCGTGGAGGGGGTTCTCTCTTTGCAGGAGGTGGC 394 *** * * ** *** * * * * ** * * consensus_274#0 ATGGAGCCCGGCTCCTCCTCCTCTACCGCTGTGGCAGCCGTCAGTGGCATCACGCCCCAG 432 consensus_274#1 GCTAAACCCTATATCTCACTGTGCGTTGTAGTTGCTAGAGTGAGGGATGG-AGAACGGGG 453 * *** *** * * ** ** ** ** * * * * consensus_274#0 CCACCAAGGAATCTAACGGTGGATCCAAGCATGCAAGAAGATCACACTGTTTCACAAGGG 492 consensus_274#1 AGATCGAGGGG----GCAGCGGACGACGGGGTGCCGGT-GCCCGCGCCGCCCAACGGCAG 508 * * *** * * *** * *** * * * * * * ** * consensus_274#0 GATTCAAAGCTTGAGCTTTTTGGTTTTGACTCTCTTGTAAATATTTTGGGCCTCAAGAGC 552 consensus_274#1 GA-----GGTATCGCCCCGTCGGCTCCAGCGATCGCGCCGTCATCCAG------ATGACC 557 ** * * * * ** * * ** * ** * * ** * consensus_274#0 ATGACAGGAGAACAGATTCAGGCCCCTTCCAGTCCTAGGGACGGTGAGGATGTTGCAATT 612 consensus_274#1 TCCAT-GGAGCCCGGCTCCTCCTCCTCTACCGCTGTGGCAGCCGTCAG-----TGGCATC 611 * **** * * * * ** * * * * * * ** ** ** ** consensus_274#0 ACGATTGGACGCCCAAAGGAAACTGGACCCAAGTTTGGTACCATGATGGGTGTCTTTGTC 672 consensus_274#1 ACGCCCCAGCCACCAAGGTATATGGAAGCTTCGCTTCAAATTTTGGAGATCGAATTTTAG 671 *** * **** * * * * * * * ** * ** * * *** consensus_274#0 CCATGCTTGCAGAATATATTGGGAATCATTTATTATATCCGTTTTACATGGATT-GTACG 731 consensus_274#1 CAATATTCTCT---TCTAGGGGGAGTAGACTAAAACACTTGTACTGCTTGAATTAGTATA 728 * ** * * * ** **** * ** * * ** * * ** *** *** consensus_274#0 T-ATGGCAGGTGTATGGCAGTCGCTTGTTTTAGTCTCGTTCTGTGGTGCATGCACATTTT 790 consensus_274#1 CCATTGCTTGTGCAAATCCGAT-CGTGCATT-GTCTTGCTC-GTGC-------------- 771 ** ** *** * * * * ** ** **** * ** *** consensus_274#0 TAACTGGAATATCATTAAGTGCCATTGCAA 820 consensus_274#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||