These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2757#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CAATAGAGGCCAGTTTACATCTTCAAACCCAAAGGGTGATGAAGCAACATCGGAATTGACAGCTTCAGATGGCTCCCCAAACTGGGGATCCAGTGAAAGGTCGGGCCTCCCTCTGCTGCTGAATGCCATCACTGTGGTATAAATGCAAAGGCTACACCTATGATGCGTCGTGGACCTGATGGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGGGCAAACAAGGGGATGTTGAGGGACCTATCAAAAGCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAATGGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGCCACGAATCATCAACGTGAGTATAGCGATGTTTGTCTTGTGGAGGATCGCGAACATCATGCCGGCATTATATCCATGTAGTTTAACTGTCTGTACTATAACTTGATGAGAACCTGTTAGGTACCTAGGCCATTTCTTTACCATCATTTAGGGTTTGAATGTTGTTCTGCATATGTTGTAAGCCATGAAAAATCATGCTTCCGGTCATTATGGCCGTAGCAATTTTATTTCTTGTTAGACTCTTGGGTGGAAGTGAGAACAGAGAAGGTGATGAAGTGAATATTTTACTTGTGTCTTGTAGTTATTTAAAAAAAAAAAAAAAAA] [+] EMBL AU101418 [CAATAGAGGCCAGTTTACATCTTCAAACCCAAAGGGTGATGAAGCAACATCGGAATTGACAGCTTCAGATGGCTCCCCAAACTGGGGATCCAGTGAAAGGTCGGGCCTCCCTCTGCTGCTGAATGCCATCACTGTGGTATAAATGCAAAGGCTACACCTATGATGCGTCGTGGACCTGATGGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGGGCAAACAAGGGGATGTTGAGGGACCTATCAAAAGCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAATGGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGCCACGAATCATCAACGTGAGTATAGCGATGTTTGTCTTGTGGAGGATCGCGAACATCATGCCGGCATTATATCCATGTAGTTTAACTGTCTGTACTATAACTTGATGAGAACCTGTTAGGTACCTAGGCCATTTCTTTACCATCATTTAGGGTTTGAATGTTGTTCTGCATATGTTGTAAGCCATGAAAAATCATGCTTCCGGTCATTATGGCCGTAGCAATTTTATTTCTTGTTAGACTCTTGGGTGGAAGTGAGAACAGAGAAGGTGATGAAGTGAATATTTTACTTGTGTCTTGTAGTTATTTAAAAAAAAAAAAAAAAA] consensusID : consensus_2757#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [CACCTATGATGCGTCGTGGACCTGATGGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGGCAAACAAGGGGATGTTGAGGGACCTATCAAAGCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAATGGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGCCACGAATCATCAACGTGAGTATAGCGATGTTTGTCTTGTGAGGATCGCGAACATCATGCCGGCATTATATCCATGTAGTTTAACTGTCTGTACTATAACTTGATGAGAACCTGTTAGGTACCTAGGCCATTTCTTTACCATCATTTAGGGTTTGAATGTTGTTCTGCATATGTTGTAAGCCATGAAAAATCATGCTTCCGGTCATTATGGCCATAGCAATTTTATTTCTTGTTAGACTCTTGGGTGGAAGTGAGAACAGAGAAGGTGATGAAGTGAATATTTTACTTGTGTCTTGTAGTTATTTATATTTATCTCAAAATTGATTTATCCCAAAAA] [+] EMBL BI813347 [CACCTATGATGCGTCGTGGACCTGATGGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGGCAAACAAGGGGATGTTGAGGGACCTATCAAAGCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAATGGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGCCACGAATCATCAACGTGAGTATAGCGATGTTTGTCTTGTGAGGATCGCGAACATCATGCCGGCATTATATCCATGTAGTTTAACTGTCTGTACTATAACTTGATGAGAACCTGTTAGGTACCTAGGCCATTTCTTTACCATCATTTAGGGTTTGAATGTTGTTCTGCATATGTTGTAAGCCATGAAAAATCATGCTTCCGGTCATTATGGCCATAGCAATTTTATTTCTTGTTAGACTCTTGGGTGGAAGTGAGAACAGAGAAGGTGATGAAGTGAATATTTTACTTGTGTCTTGTAGTTATTTATATTTATCTCAAAATTGATTTATCCCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2757#0 CAATAGAGGCCAGTTTACATCTTCAAACCCAAAGGGTGATGAAGCAACATCGGAATTGAC 60 consensus_2757#1 ------------------------------------------------------------ consensus_2757#0 AGCTTCAGATGGCTCCCCAAACTGGGGATCCAGTGAAAGGTCGGGCCTCCCTCTGCTGCT 120 consensus_2757#1 ------------------------------------------------------------ consensus_2757#0 GAATGCCATCACTGTGGTATAAATGCAAAGGCTACACCTATGATGCGTCGTGGACCTGAT 180 consensus_2757#1 ----------------------------------CACCTATGATGCGTCGTGGACCTGAT 26 ************************** consensus_2757#0 GGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGGGCAAACAAGGGGATGTTGAGG 240 consensus_2757#1 GGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGG-CAAACAAGGGGATGTTGAGG 85 *************************************** ******************** consensus_2757#0 GACCTATCAAAAGCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAAT 300 consensus_2757#1 GACCTATCAAA-GCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAAT 144 *********** ************************************************ consensus_2757#0 GGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGC 360 consensus_2757#1 GGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGC 204 ************************************************************ consensus_2757#0 CACGAATCATCAACGTGAGTATAGCGATGTTTGTCTTGTGGAGGATCGCGAACATCATGC 420 consensus_2757#1 CACGAATCATCAACGTGAGTATAGCGATGTTTGTCTTGTG-AGGATCGCGAACATCATGC 263 **************************************** ******************* consensus_2757#0 CGGCATTATATCCATGTAGTTTAACTGTCTGTACTATAACTTGATGAGAACCTGTTAGGT 480 consensus_2757#1 CGGCATTATATCCATGTAGTTTAACTGTCTGTACTATAACTTGATGAGAACCTGTTAGGT 323 ************************************************************ consensus_2757#0 ACCTAGGCCATTTCTTTACCATCATTTAGGGTTTGAATGTTGTTCTGCATATGTTGTAAG 540 consensus_2757#1 ACCTAGGCCATTTCTTTACCATCATTTAGGGTTTGAATGTTGTTCTGCATATGTTGTAAG 383 ************************************************************ consensus_2757#0 CCATGAAAAATCATGCTTCCGGTCATTATGGCCGTAGCAATTTTATTTCTTGTTAGACTC 600 consensus_2757#1 CCATGAAAAATCATGCTTCCGGTCATTATGGCCATAGCAATTTTATTTCTTGTTAGACTC 443 ********************************* ************************** consensus_2757#0 TTGGGTGGAAGTGAGAACAGAGAAGGTGATGAAGTGAATATTTTACTTGTGTCTTGTAGT 660 consensus_2757#1 TTGGGTGGAAGTGAGAACAGAGAAGGTGATGAAGTGAATATTTTACTTGTGTCTTGTAGT 503 ************************************************************ consensus_2757#0 TATTTAAAAAAAAAAAAAAAAA--------------- 682 consensus_2757#1 TATTTATATTTATCTCAAAATTGATTTATCCCAAAAA 540 ****** * * **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||