These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2766#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1306 fasta sequence [CTGCTCACAATGCGGCGCCTCCGGTTGATATTAGGCCCAGACAGCCAGCACGGCCCGTATTCGGCACTGCCATGAATAATACTTCTGCAGCTCTGCGAAATATGATAATCTCGCCTGTGAAACGTCCTCAGCTTTCCCGAAACCGTCCACATATGTTCACGTTGTAGAATTGGAAGAGCTGATGTGGCATCCTGCTTTGGAATCTGTCACGGTCTTGTCATGGACTTGCTAACTGTAAATGCAGTAAGATCAATCTGTCTCTTTCCCTCACTTCAATTTCTGCCCCATCATCTTGGTGTATAGAAACTGTTACAGAAGTCCCTTGGAAGAAGATTGTTAGGGAGGTTCTGATATATACTTGGGGCGCAAAGTCACTCCTTCCTGATTGCAATAACACGTAGTGTATCTGCAGCTAAATTCTTGGACTTTGTGACTGTCATCACACTAACCATCTACTATTAGTAGTAATAATTTACTACTGCTCGGGGTGGACTAACCCCTGAATGATGGGGACGGTTTTTCTAGGATTATGTTCTAGGGACCAGTACTGACTTGTCGGATGCGGGTTCTATAGCTGGAAACTACAAAGGGATCTGTTGTAATCGTGCCTTCTGTTGTTTATTATATTTGTAGTTACCTAAAATGCACTTAACCAGTTCTTCATTGAGCTATAGTACAGCACATCGTGGTCCTGAATTGTAGAAGTGGTACGTGGCATGCTATTTGTATGCACCCTAGCAAACTCATCAGCTCGAGACTAGCGCCTTTCGGCCTACCTGGACGAATTTTTATACCTTTCTGTCAACAACCCAAGGGATATGTCACGCCATCGCCCATCGATGATCAGCTGACGGCCACCGATCGTGAAGGCGAGAGGTACAGGATAAATACTATCCGTGATGGCTGCGTCTGCATTTTTTTTTTTGTTTAGCATTGTTCGGGTGACTATTTATGGCAGCGGGCCAGCTGCTCCACCGAGCTGAAGCCTCGTCACCGCCCACGTACGGTGCGGCGATTGGCTGGGCTTGCGCTCGCCGGAGACGCTCCTGATTTAAATTAATCGAATGATGAGGAGATTTTGTTCCAGCTAATCCCTCTTGAGGTTGACAGCGAAAGCGGAGAAAACGAAACCTGCCGCTCCAATCCGGAGGGTGACGCTGGGCCGGCTGAGCACGTCAGCACTCGCCATTGAAAAGGATTACGGGGTGTTTGATTTGATGCTTCTTGTCGCAACGTGATAGTACTTTAATTTGAGGAATGTGTTGGGTTAATTGTACTAACAATCATGGTTAATCGTACTACTCTG] [+] EMBL AK108775 [CTGCTCACAATGCGGCGCCTCCGGTTGATATTAGGCCCAGACAGCCAGCACGGCCCGTATTCGGCACTGCCATGAATAATACTTCTGCAGCTCTGCGAAATATGATAATCTCGCCTGTGAAACGTCCTCAGCTTTCCCGAAACCGTCCACATATGTTCACGTTGTAGAATTGGAAGAGCTGATGTGGCATCCTGCTTTGGAATCTGTCACGGTCTTGTCATGGACTTGCTAACTGTAAATGCAGTAAGATCAATCTGTCTCTTTCCCTCACTTCAATTTCTGCCCCATCATCTTGGTGTATAGAAACTGTTACAGAAGTCCCTTGGAAGAAGATTGTTAGGGAGGTTCTGATATATACTTGGGGCGCAAAGTCACTCCTTCCTGATTGCAATAACACGTAGTGTATCTGCAGCTAAATTCTTGGACTTTGTGACTGTCATCACACTAACCATCTACTATTAGTAGTAATAATTTACTACTGCTCGGGGTGGACTAACCCCTGAATGATGGGGACGGTTTTTCTAGGATTATGTTCTAGGGACCAGTACTGACTTGTCGGATGCGGGTTCTATAGCTGGAAACTACAAAGGGATCTGTTGTAATCGTGCCTTCTGTTGTTTATTATATTTGTAGTTACCTAAAATGCACTTAACCAGTTCTTCATTGAGCTATAGTACAGCACATCGTGGTCCTGAATTGTAGAAGTGGTACGTGGCATGCTATTTGTATGCACCCTAGCAAACTCATCAGCTCGAGACTAGCGCCTTTCGGCCTACCTGGACGAATTTTTATACCTTTCTGTCAACAACCCAAGGGATATGTCACGCCATCGCCCATCGATGATCAGCTGACGGCCACCGATCGTGAAGGCGAGAGGTACAGGATAAATACTATCCGTGATGGCTGCGTCTGCATTTTTTTTTTTGTTTAGCATTGTTCGGGTGACTATTTATGGCAGCGGGCCAGCTGCTCCACCGAGCTGAAGCCTCGTCACCGCCCACGTACGGTGCGGCGATTGGCTGGGCTTGCGCTCGCCGGAGACGCTCCTGATTTAAATTAATCGAATGATGAGGAGATTTTGTTCCAGCTAATCCCTCTTGAGGTTGACAGCGAAAGCGGAGAAAACGAAACCTGCCGCTCCAATCCGGAGGGTGACGCTGGGCCGGCTGAGCACGTCAGCACTCGCCATTGAAAAGGATTACGGGGTGTTTGATTTGATGCTTCTTGTCGCAACGTGATAGTACTTTAATTTGAGGAATGTGTTGGGTTAATTGTACTAACAATCATGGTTAATCGTACTACTCTG] consensusID : consensus_2766#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1291 fasta sequence [ATTTTGCCATTCTCCCGTTTCAAACCCGCGCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCCCTGCCGCTGCTGCCGCCACCGCCGCGGCGGCGCCCCGATTCGGTGATCCCCCGCTCGCCCATCTCCGCCGTGACGTATCGGCGACGCGGAGGGAGCCCCCCACCCCCCACCTCCGGATCTAGGGTTTCGAGGCCCAGGTGGCGTTGCGCTGCGCCCCCGCTCCTCCGCCTCTCCTCCGCCGCCGAGGGTTCGCGTGAGGTTTCTGCGTATTACCAGCTCTGTACTTAATTTACTAGTGAGAAGCAAAATGAAGTGCAATGCTTGCTGGCGGGAGTTGGAAGGGCAAGCTGTATCAACAACCTGCGGTCATCTTTTATGTACAGAGGATGCTAAGAAAATACTGAGCAATGATGCTGCATGCCCGATTTGTGATCAAGTGCTTTCAAAAAGCCATATGAGACCTGTTGATACAAATCCAAATGATGATTGGACAAATATGTCAATGGCTGGAGTTTCTCCACAGATACTTATGAAGAGTGCATACAGAAGTGTCATGTTTTACATTGGGCAAAAGGAACTGGAGATGCAGTACAAGATGAACAGAATTGTTGGTCAGTGTAGGCAAAAGTGTGAACTTATGCAGGCAAAGTTCACTGAGAAGCTGGAAGAAGTTCATACTGCATACCAGAAAATGGCCAAAAAAATGCCAGTTGATGGAACAAGAGGTTGAAAACTTGTCGAGGGATAAGCAAGAGCTACAAGAAAAATTTGCTGAGAAATCCAGGCAGAAAAGGAAGCTTGATGAGATGTATGATCAGCTGAGAAGCGAGTATGAGTCGGCAAAGCGTTCAGCAATTCAACCTGCGAACAACTACTTCCCAAGAGCCCAGCCAGACCTGTTCTCAGGCGTGCCCAACATAATGGATAGCAGCGACCCTCTGAGACAAGGATTGGCTGGTCTTCCTGAAACTCCAGGGCGGAGAGATGAGGGATGGGCTCCACCACCAAGGCAACGTCGGTCCACCTCTGGACCATTTGAGCTGTCTGCGGGATCTCCTGCTCACAATGCGGCGCCTCCGGTTGATATTAGGCCCAGACAGCCAGCACGGCCCGTATTCGGCACTGCCATGAATAATACTTCTGCAGCTCTGCGAAATATGATAATCTCGCCTGTGAAACGTCCTCAGCTTTCCCGAAACCGTCCACATATGTTCACGTAATGTCCTCCTTATTGCTCATGCATGTATTTCACATCTAAATGAAGCAGTTTGGGAATGAAAATTGATGTC] [+] EMBL AK100854 [ATTTTGCCATTCTCCCGTTTCAAACCCGCGCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCCCTGCCGCTGCTGCCGCCACCGCCGCGGCGGCGCCCCGATTCGGTGATCCCCCGCTCGCCCATCTCCGCCGTGACGTATCGGCGACGCGGAGGGAGCCCCCCACCCCCCACCTCCGGATCTAGGGTTTCGAGGCCCAGGTGGCGTTGCGCTGCGCCCCCGCTCCTCCGCCTCTCCTCCGCCGCCGAGGGTTCGCGTGAGGTTTCTGCGTATTACCAGCTCTGTACTTAATTTACTAGTGAGAAGCAAAATGAAGTGCAATGCTTGCTGGCGGGAGTTGGAAGGGCAAGCTGTATCAACAACCTGCGGTCATCTTTTATGTACAGAGGATGCTAAGAAAATACTGAGCAATGATGCTGCATGCCCGATTTGTGATCAAGTGCTTTCAAAAAGCCATATGAGACCTGTTGATACAAATCCAAATGATGATTGGACAAATATGTCAATGGCTGGAGTTTCTCCACAGATACTTATGAAGAGTGCATACAGAAGTGTCATGTTTTACATTGGGCAAAAGGAACTGGAGATGCAGTACAAGATGAACAGAATTGTTGGTCAGTGTAGGCAAAAGTGTGAACTTATGCAGGCAAAGTTCACTGAGAAGCTGGAAGAAGTTCATACTGCATACCAGAAAATGGCCAAAAAAATGCCAGTTGATGGAACAAGAGGTTGAAAACTTGTCGAGGGATAAGCAAGAGCTACAAGAAAAATTTGCTGAGAAATCCAGGCAGAAAAGGAAGCTTGATGAGATGTATGATCAGCTGAGAAGCGAGTATGAGTCGGCAAAGCGTTCAGCAATTCAACCTGCGAACAACTACTTCCCAAGAGCCCAGCCAGACCTGTTCTCAGGCGTGCCCAACATAATGGATAGCAGCGACCCTCTGAGACAAGGATTGGCTGGTCTTCCTGAAACTCCAGGGCGGAGAGATGAGGGATGGGCTCCACCACCAAGGCAACGTCGGTCCACCTCTGGACCATTTGAGCTGTCTGCGGGATCTCCTGCTCACAATGCGGCGCCTCCGGTTGATATTAGGCCCAGACAGCCAGCACGGCCCGTATTCGGCACTGCCATGAATAATACTTCTGCAGCTCTGCGAAATATGATAATCTCGCCTGTGAAACGTCCTCAGCTTTCCCGAAACCGTCCACATATGTTCACGTAATGTCCTCCTTATTGCTCATGCATGTATTTCACATCTAAATGAAGCAGTTTGGGAATGAAAATTGATGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2766#0 -------------CTGCTCACAATGCGGCGCCTCCGGTTGATATTAGGCCCAGACAGCCA 47 consensus_2766#1 ATTTTGCCATTCTCCCGTTTCAAACCCGCGCTCTCTCTCTCTCTCTCTCTCTCTCCCCCT 60 * * *** * **** * * * * * * * ** consensus_2766#0 GCACGGC-CCGTATTCGGCACTGCCATGAATAATACTTC--TGCAGCTCTGCGAAATATG 104 consensus_2766#1 CCCTGCCGCTGCTGCCGCCACCGCCGCGG-CGGCGCCCCGATTCGGTGATCCCCCGCTCG 119 * * * * * ** *** *** * * * * * * * * * consensus_2766#0 ATAATCTCGCCTGTGAAACGTCCTCAGCTTTCCCGAAACCGTCCACATATGTTCAC--GT 162 consensus_2766#1 CCCATCTCCGCCGTGACGTATCGGCGACGCGGAGGGAGCCCCCCACCCCCCACCTCCGGA 179 ***** * **** ** * * * * ** **** * * * consensus_2766#0 TGTAGAATTGGAAGAGCTGATGTGGCATCCTGCTTTGGAATCTGTCACGGTCTTGTCATG 222 consensus_2766#1 TCTAGGGTTTCGAG-GCCCAGGTGGCGTTGCGCTGCG----CCCCCGCTCCTCCGCCTCT 234 * *** ** ** ** * ***** * *** * * * * * * consensus_2766#0 GACTTGCTAACTGTAAATGCAGTAAGATCAATCTGTCTCTTTCCCTCACTTCAATTTCTG 282 consensus_2766#1 CCTCCGCCGCCGAGGGTTCGCGTGAGGTT--TCTGCGTATTACCAGCTCTGTACTTAATT 292 ** * * ** ** * **** * ** ** * ** * ** * consensus_2766#0 CCCCATCATCTTGGTGTATAGAAACTGTTACAGAAGTCCCTTGGAAGAAGATTGTTAGGG 342 consensus_2766#1 TACTAG-----TGAGAAGCAAAATGAAGTGCA-ATGCTTGCTGGCGGGAGTTGGAAGGGC 346 * * ** * ** * ** * * *** * ** * * ** consensus_2766#0 AGGTTCTGATATATACTTGGGGCGCAAAGTCACTCCTTCCTGATTGCAATAACACGTAGT 402 consensus_2766#1 AAGCTGTATCAACAACCTGCGGTCATCTTTTATGTACAGAGGATGCTAAGAAAATACTGA 406 * * * * * ** ** ** * * *** ** ** * * consensus_2766#0 GTATCTGCAGCTAAATTCTTGGACTTTG--TGACTGTCATCACACTAACCATCTACTATT 460 consensus_2766#1 GCAA-TGATGCTGCATGCCCGATTTGTGATCAAGTGCTTTCAAAA-AGCCATATGAGACC 464 * * ** *** ** * * * ** * ** *** * * **** * * consensus_2766#0 AGTAGTAATAATTTACTACTGCTCGGGGTGGACTAACCCCTGAATGATGGGGACGGTTTT 520 consensus_2766#1 TGTTGATACAAATC-CAAATGAT--GATTGGACAAATATGTCAATGGCTGG---AGTTTC 518 ** * * ** * * * ** * * ***** ** * **** ** **** consensus_2766#0 TCTAGGATTATGTTCTAGGGACCAGTACTGACTTGTCGGATGCGGGTTCTATAGCTGGAA 580 consensus_2766#1 TCCACAGATACTTATGAAGAGTGCATACAGAAGTGTCAT------GTTTTACATTGGGCA 572 ** * ** * * * *** ** **** *** ** * ** * consensus_2766#0 ACTACAAAGGGATCTGTTGTA-ATCGTGCCTTCTGTTGTTTATTATATTTGTAGTTACCT 639 consensus_2766#1 AAAGGAACTGGAGATGCAGTACAAGATGAACAGAATTGTTGGTCA---GTGTAGGCAAA- 628 * ** *** ** *** * ** ***** * * ***** * consensus_2766#0 AAAATGCACTTAACCAGTTCTTCATTGAGCTATAGTACAGCACATCGTGGTCCTGAATTG 699 consensus_2766#1 AGTGTGAACTTATGCAGG-CAAAGTTCACTGAGAAGCTGGAAGAAGTTCATACTGCATAC 687 * ** ***** *** * ** * * * * * * * * *** ** consensus_2766#0 TAGAAG-TGGTACGTGGCATGCTATTTGTATGCACCCTAGCAAACTCATCAGCTCGAGAC 758 consensus_2766#1 CAGAAAATGGCCAAAAAAATGCCAGTTG-ATGGA-----ACAAG------AGGTTGAAA- 734 **** *** **** * *** *** * *** ** * ** * consensus_2766#0 TAGCGCCTTTCGGCCTACCTGGACGAATTTTTATACCTTTCTGTCAACAACCCAAGGGAT 818 consensus_2766#1 ----ACTTGTCGAGGGATAAGCAAGAGCTACAAGAAAAATTTGCTGAGAAATCCAGGCAG 790 * * *** * * * ** * * * * ** * ** * *** * consensus_2766#0 ATGTCACGCCATCGCCCATCG-ATGATCAGCTGACGGCCACCGATCGTGAAGGCGAGAGG 877 consensus_2766#1 AAAAGGAAGCTTGATGAGATGTATGATCAGCTGAGAAGCGAGTAT-GAGTCGGCAAAGCG 849 * * * * ************ * ** * * *** * * consensus_2766#0 TACAGGATAAATACTATCCGTGA-TGGCTGCGTCT-----GCATTTTTTTTTTTGTTTAG 931 consensus_2766#1 TTCAGC---AATTCAACCTGCGAACAACTACTTCCCAAGAGCCCAGCCAGACCTGTTCTC 906 * *** *** * * * * ** ** * ** ** **** consensus_2766#0 CATTGTTCGGGTGACTATTTATGGCAGCGGGCCAGCTGCTCCACCGAGCTGA-AGCCTCG 990 consensus_2766#1 AGGCGTGCCCAACATAATGGATAGCAGCGA-CCCTCTGAGACAAGGATTGGCTGGTCTTC 965 ** * * ** ** ****** ** *** ** ** * * ** consensus_2766#0 TCACCGCCCACGTACGGTGCGGCGATTGGCTGGGCTTGCGCTC--GCCGGAGACGCTCCT 1048 consensus_2766#1 CTGAAACTCCAGGGCGGAGAGATGAGGGATGGGCTCCACCACCAAGGCAACGTCGGTCCA 1025 * * * *** * * ** * ** * * * * * ** *** consensus_2766#0 GATTTAAATTAATCGAATGATGAGGAGATTTTGTTCCAGCTAATCC--CTCTTGAGGTTG 1106 consensus_2766#1 CCTCTGGACCATTTGAGCTGTCTGCGGGATCTCCTGCTCACAATGCGGCGCCTCCGGTTG 1085 * * * * * ** * * * * * * * *** * * * * ***** consensus_2766#0 ACAGCGAAAGCGGAGAA--AACGAAACCTGC-CGCTCCAATCCGGAGGGTGACGCT---- 1159 consensus_2766#1 ATATTAGGCCCAGACAGCCAGCACGGCCCGTATTCGGCACTGCCATGAATAATACTTCTG 1145 * * * ** * * * ** * * ** * * * * * ** consensus_2766#0 -GGGCCGGCTGAGCACGTCAGCACTCGCCATTGAAAAGGATTACGGGGTGTTTGATTTGA 1218 consensus_2766#1 CAGCTCTGCGAAATATGATAAT-CTCGCCTGTGAAACGTCCT-CAGCTTTCCCGAAACCG 1203 * * ** * * * * ****** ***** * * * * * ** consensus_2766#0 TGCTTCTTGTCGCAACGTGATAGTACTTTAATT--TGAGGAATGTGTTGGGTTAATTGTA 1276 consensus_2766#1 T-CCACATATGTTCACGTAATGTCCTCCTTATTGCTCATGCATGTATTTCAC-ATCTAAA 1261 * * * * * **** ** * *** * * * **** ** * * * consensus_2766#0 CTAACAATCATGGTTAATCGTACTACTCTG 1306 consensus_2766#1 TGAAGCAGTTTGGGAATGAAAATTGATGTC 1291 ** * *** * * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||