These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 785 fasta sequence [TCCACTGTCTCTCCTTCCCAAATCCTCCTCCCTCCCTCCTTCCCACTCAAAAAAAAAAAAAAAAAACCCGCATCCTCTCCTCCTCTCCAACTCCAATCCCCACCACCTCGCGTCACGCCGATCACCTCCTCCTCCCCTTCCGGTGGATCCCCGCGGCGGTTTCGACAAGTCCCGCGTCGCCGTCCGGTGTGGAGCGCCGTCGCGGCCGGTGGCCTGTAAGGTGCGGTGTTGTTGCTGGTGAGAGGTTACTGGGTTTTGCCGCGAGCGAGGTGCGTAGCCGCTCGCCTGCGTTTCGCGCGCTGGGTCTTATCACTTTGGAGGCTTCTAGAAGAAGGTTTCTGGAGTTTTCTGGAAACTGCGCTGTGATGCCCCCGCGACTGCGAGAAAGTGTCTCCAAGTTTGTGACACAGGCGTGATTCTGCTTGTAGGCTGGGGTTTTGCATTTTGGAGCCGCGGTGGTCTCGGCGGAAGGCATGGGCTAGGCCCCCAGCACGGTTTCCAGGTGATTGATTGGTGGATAGAATTGTTGCCTGAGAGCAGCAAGGTTTGGGCGTGGTGACTGGAAGCAATCACGATGACGTCATTGTCACGAACTCTATCCCGGGGAGGGCCAATGCAGCCACCGGGGCAGCGGCGCATCCTCAGAACGCAGACAGCGGTAAACCTGGGCGAGCAAATCTTTGACAGTGAGGTGGTGCCATCATCGCTTGTTGAGATCGCGCCCATCCTCCGTGTTGCCAATGAGGTCGAGGCGTCCAATCCCCGGGTTGCATACCTCTGTCGAT] [+] EMBL CB675793 [TCCACTGTCTCTCCTTCCCAAATCCTCCTCCCTCCCTCCTTCCCACTCAAAAAAAAAAAAAAAAAACCCGCATCCTCTCCTCCTCTCCAACTCCAATCCCCACCACCTCGCGTCACGCCGATCACCTCCTCCTCCCCTTCCGGTGGATCCCCGCGGCGGTTTCGACAAGTCCCGCGTCGCCGTCCGGTGTGGAGCGCCGTCGCGGCCGGTGGCCTGTAAGGTGCGGTGTTGTTGCTGGTGAGAGGTTACTGGGTTTTGCCGCGAGCGAGGTGCGTAGCCGCTCGCCTGCGTTTCGCGCGCTGGGTCTTATCACTTTGGAGGCTTCTAGAAGAAGGTTTCTGGAGTTTTCTGGAAACTGCGCTGTGATGCCCCCGCGACTGCGAGAAAGTGTCTCCAAGTTTGTGACACAGGCGTGATTCTGCTTGTAGGCTGGGGTTTTGCATTTTGGAGCCGCGGTGGTCTCGGCGGAAGGCATGGGCTAGGCCCCCAGCACGGTTTCCAGGTGATTGATTGGTGGATAGAATTGTTGCCTGAGAGCAGCAAGGTTTGGGCGTGGTGACTGGAAGCAATCACGATGACGTCATTGTCACGAACTCTATCCCGGGGAGGGCCAATGCAGCCACCGGGGCAGCGGCGCATCCTCAGAACGCAGACAGCGGTAAACCTGGGCGAGCAAATCTTTGACAGTGAGGTGGTGCCATCATCGCTTGTTGAGATCGCGCCCATCCTCCGTGTTGCCAATGAGGTCGAGGCGTCCAATCCCCGGGTTGCATACCTCTGTCGAT] consensusID : consensus_277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [GTCACCCCTTATACCTCCTCCTCCCCTTCCGGTGGATCCCCGCTGGCGCGTTTCGACAAGTCCCGCGTCGCCGTCCGGTGTGGAGCGCCGTCGCGGCCGGTGGCCTGTAAGAAGGTTTCTGGAGTTTTCTGGAAACTGCGCTGTGATGCCCCCGCGACTGCGAGAAAGTGTCTCCAAGTTTGTGACACAGGCGTGATTCTGCTTGTAGGCTGGGGTTTTGCATTTTGGAGCCGCGGTGGTCTCGGCGGAAGGCATGGGCTAGGCCCCCAGCACGGTTTCCAGGTGATTGATTGGTGGATAGAATTGTTGCCTGAGAGCAGCAAGGTTTGGGCGTGGTGACTGGAAGCAATCACGATGACGTCATTGTCACGAACTCTATCCCGGGGAGGGCCAATGCAGCCACCGGGGCAGCGGCGCATCCTCAGAACGCATACAGCGGTAAACCTGGGCGAGCAAATCTTTGACAGTGAGGTGGTGCCATCATCGCTTGTTGAGATCGCGCCCATCCTCCGTGTTGCCAATGAGGTCGAGGCGTCCAATCCCCGGGTTGCATACCTCTGTCGATTCTATGCATTTGAAAAGGCTCACAGGTTAGATCCAACTTCAAGTGGCCGGGGTGTCCGGCAATTCAAGACGGCTCTTTTGCAACGGCTTGAAAGGGAGAATGAACCCACCTTGAGAGGAACGGCCCGCAAG] [+] EMBL CB649545 [GTCACCCCTTATACCTCCTCCTCCCCTTCCGGTGGATCCCCGCTGGCGCGTTTCGACAAGTCCCGCGTCGCCGTCCGGTGTGGAGCGCCGTCGCGGCCGGTGGCCTGTAAGAAGGTTTCTGGAGTTTTCTGGAAACTGCGCTGTGATGCCCCCGCGACTGCGAGAAAGTGTCTCCAAGTTTGTGACACAGGCGTGATTCTGCTTGTAGGCTGGGGTTTTGCATTTTGGAGCCGCGGTGGTCTCGGCGGAAGGCATGGGCTAGGCCCCCAGCACGGTTTCCAGGTGATTGATTGGTGGATAGAATTGTTGCCTGAGAGCAGCAAGGTTTGGGCGTGGTGACTGGAAGCAATCACGATGACGTCATTGTCACGAACTCTATCCCGGGGAGGGCCAATGCAGCCACCGGGGCAGCGGCGCATCCTCAGAACGCATACAGCGGTAAACCTGGGCGAGCAAATCTTTGACAGTGAGGTGGTGCCATCATCGCTTGTTGAGATCGCGCCCATCCTCCGTGTTGCCAATGAGGTCGAGGCGTCCAATCCCCGGGTTGCATACCTCTGTCGATTCTATGCATTTGAAAAGGCTCACAGGTTAGATCCAACTTCAAGTGGCCGGGGTGTCCGGCAATTCAAGACGGCTCTTTTGCAACGGCTTGAAAGGGAGAATGAACCCACCTTGAGAGGAACGGCCCGCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_277#0 TCCACTGTCTCTCCTTCCCAAATCCTCCTCCCTCCCTCCTTCCCACTCAAAAAAAAAAAA 60 consensus_277#1 ------------------------------------------------------------ consensus_277#0 AAAAAACCCGCATCCTCTCCTCCTCTCCAACTCCAATCCCCACCACCTCGCGTCACGCCG 120 consensus_277#1 ---------------------------------------------------GTCACCCCT 9 ***** ** consensus_277#0 ATCACCTCCTCCTCCCCTTCCGGTGGATCCCCGC-GGCG-GTTTCGACAAGTCCCGCGTC 178 consensus_277#1 TATACCTCCTCCTCCCCTTCCGGTGGATCCCCGCTGGCGCGTTTCGACAAGTCCCGCGTC 69 ******************************* **** ******************** consensus_277#0 GCCGTCCGGTGTGGAGCGCCGTCGCGGCCGGTGGCCTGTAAGGTGCGGTGTTGTTGCTGG 238 consensus_277#1 GCCGTCCGGTGTGGAGCGCCGTCGCGGCCGGTGGCCTGTAAG------------------ 111 ****************************************** consensus_277#0 TGAGAGGTTACTGGGTTTTGCCGCGAGCGAGGTGCGTAGCCGCTCGCCTGCGTTTCGCGC 298 consensus_277#1 ------------------------------------------------------------ consensus_277#0 GCTGGGTCTTATCACTTTGGAGGCTTCTAGAAGAAGGTTTCTGGAGTTTTCTGGAAACTG 358 consensus_277#1 ---------------------------------AAGGTTTCTGGAGTTTTCTGGAAACTG 138 *************************** consensus_277#0 CGCTGTGATGCCCCCGCGACTGCGAGAAAGTGTCTCCAAGTTTGTGACACAGGCGTGATT 418 consensus_277#1 CGCTGTGATGCCCCCGCGACTGCGAGAAAGTGTCTCCAAGTTTGTGACACAGGCGTGATT 198 ************************************************************ consensus_277#0 CTGCTTGTAGGCTGGGGTTTTGCATTTTGGAGCCGCGGTGGTCTCGGCGGAAGGCATGGG 478 consensus_277#1 CTGCTTGTAGGCTGGGGTTTTGCATTTTGGAGCCGCGGTGGTCTCGGCGGAAGGCATGGG 258 ************************************************************ consensus_277#0 CTAGGCCCCCAGCACGGTTTCCAGGTGATTGATTGGTGGATAGAATTGTTGCCTGAGAGC 538 consensus_277#1 CTAGGCCCCCAGCACGGTTTCCAGGTGATTGATTGGTGGATAGAATTGTTGCCTGAGAGC 318 ************************************************************ consensus_277#0 AGCAAGGTTTGGGCGTGGTGACTGGAAGCAATCACGATGACGTCATTGTCACGAACTCTA 598 consensus_277#1 AGCAAGGTTTGGGCGTGGTGACTGGAAGCAATCACGATGACGTCATTGTCACGAACTCTA 378 ************************************************************ consensus_277#0 TCCCGGGGAGGGCCAATGCAGCCACCGGGGCAGCGGCGCATCCTCAGAACGCAGACAGCG 658 consensus_277#1 TCCCGGGGAGGGCCAATGCAGCCACCGGGGCAGCGGCGCATCCTCAGAACGCATACAGCG 438 ***************************************************** ****** consensus_277#0 GTAAACCTGGGCGAGCAAATCTTTGACAGTGAGGTGGTGCCATCATCGCTTGTTGAGATC 718 consensus_277#1 GTAAACCTGGGCGAGCAAATCTTTGACAGTGAGGTGGTGCCATCATCGCTTGTTGAGATC 498 ************************************************************ consensus_277#0 GCGCCCATCCTCCGTGTTGCCAATGAGGTCGAGGCGTCCAATCCCCGGGTTGCATACCTC 778 consensus_277#1 GCGCCCATCCTCCGTGTTGCCAATGAGGTCGAGGCGTCCAATCCCCGGGTTGCATACCTC 558 ************************************************************ consensus_277#0 TGTCGAT----------------------------------------------------- 785 consensus_277#1 TGTCGATTCTATGCATTTGAAAAGGCTCACAGGTTAGATCCAACTTCAAGTGGCCGGGGT 618 ******* consensus_277#0 ------------------------------------------------------------ consensus_277#1 GTCCGGCAATTCAAGACGGCTCTTTTGCAACGGCTTGAAAGGGAGAATGAACCCACCTTG 678 consensus_277#0 ------------------ consensus_277#1 AGAGGAACGGCCCGCAAG 696 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||