These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1430 fasta sequence [TGCAAATGGATTGTCGAGATGCTTTGGGTTTGTAAACTTTGAGAAATCAGAATGTGCTAGAAATGCAGTTAAAAATCTCAATGGGAAGTCCATTGGTAATATGGTGTTATATGTTGCAAGGGCTCAGAAAAAATCAGAAAGACAAGCTGAGTTAAAAGCGAAATTTGAGCATGACAAAAATCAGAAATTTGAGAAGCTTCAAACAGTCAATCTATACTTGAAGAATTTGGATGATGACATCAATGATGAGCATCTTAGGAAGTTGTTTGAATGTTTTGGTGAGGTAGCATCATGCAAGGTCATGCTTGATTCGCATGGAAGGAGCAAGGGTTGTGGATTTGTATCTTTTGCAACTGTTGAAGACGCTAACAATGCTATTTTAAAAATGAACGGGAAAATGGTTGGGAAAAAGCCATTATATGTTGCCGTAGCTCAACGGAAGGAGGAGAGAAAGGCATTTTTAGCGGCACATTTTGCTCGTGTTAGAGCCCTAGCAACAATGGCACCTACATTAGGGCCAAACATTGCTCCCCATCAGTTCAATTTTGGCCATGGTGTGCCTGCCTTGTTCCCACCACCACCACCTGCAGGCTTTGGGTTCCAACCAAATTTTGTTCCAAACATGATGATGCCATATAACATGCAAAGGCAGCCTGGCCAGAGGAGTGGTCCTCCGCATGGAGGAATGCCTAGACATCTGCATAATCCTCACCAGATGTTTCACCAAAATGCCAACCAGGGCTTCAGACACATGCCAAATCGTAGGAATGGTGTGGCCAACCCAGCAATGTTGCATCAGCACCATCGCTTCTCTAGCCCAATGCAGCCAATGCAACAAGCTGTCAAGCATGTGGTGCCCGTGGGGGAATTGCAAGCTCCAAGCAATAACCTTCAGACTTCCTTGGCTTCTGCGAACCCGGAACAACAACGAGAGATTCTTGGCGACATGTTGTTCCCGCTCGTCGAACAGCTGGTGAACGAGAAAGCTTATAAGGTGACTGGGATGCTGCTTGAGCTGGACAAGACTGAAGTTCTGAACCTCGTAGAGTCTCCAGATACTCTCCGGGACAAGGTTGCTGAGGCCATGAAGGTGCTGGAGTTGGAGGCTACCGCCACCGCCGCCGCCGCCGCCGCCGCTTCAGGCTCCGGCGACGGCGACGCCGCCGCGCCGTCCTCCTCCAGCGCCGCCTGAGCGGTGTTGGTGGCCGGATGAATTATCATAATAAGATGAACTTTTGAAGTCGTGTGTTTTGGACTTGGGAACTGTTTAGATGACTGTTCAGTTTATGACTTTAGCAGCTTGCGTTTGCAGATTATTTGGAGTATTGGTTATGGTTGTGTACTCTTTATGTTTATTTTTTTTCTTTTTCATGTGATGGTACACTGTGTGTGGATGGTTAATTAGGATTTTTTGTTGAAATGGATCCTTA] [+] EMBL AK064233 [TGCAAATGGATTGTCGAGATGCTTTGGGTTTGTAAACTTTGAGAAATCAGAATGTGCTAGAAATGCAGTTAAAAATCTCAATGGGAAGTCCATTGGTAATATGGTGTTATATGTTGCAAGGGCTCAGAAAAAATCAGAAAGACAAGCTGAGTTAAAAGCGAAATTTGAGCATGACAAAAATCAGAAATTTGAGAAGCTTCAAACAGTCAATCTATACTTGAAGAATTTGGATGATGACATCAATGATGAGCATCTTAGGAAGTTGTTTGAATGTTTTGGTGAGGTAGCATCATGCAAGGTCATGCTTGATTCGCATGGAAGGAGCAAGGGTTGTGGATTTGTATCTTTTGCAACTGTTGAAGACGCTAACAATGCTATTTTAAAAATGAACGGGAAAATGGTTGGGAAAAAGCCATTATATGTTGCCGTAGCTCAACGGAAGGAGGAGAGAAAGGCATTTTTAGCGGCACATTTTGCTCGTGTTAGAGCCCTAGCAACAATGGCACCTACATTAGGGCCAAACATTGCTCCCCATCAGTTCAATTTTGGCCATGGTGTGCCTGCCTTGTTCCCACCACCACCACCTGCAGGCTTTGGGTTCCAACCAAATTTTGTTCCAAACATGATGATGCCATATAACATGCAAAGGCAGCCTGGCCAGAGGAGTGGTCCTCCGCATGGAGGAATGCCTAGACATCTGCATAATCCTCACCAGATGTTTCACCAAAATGCCAACCAGGGCTTCAGACACATGCCAAATCGTAGGAATGGTGTGGCCAACCCAGCAATGTTGCATCAGCACCATCGCTTCTCTAGCCCAATGCAGCCAATGCAACAAGCTGTCAAGCATGTGGTGCCCGTGGGGGAATTGCAAGCTCCAAGCAATAACCTTCAGACTTCCTTGGCTTCTGCGAACCCGGAACAACAACGAGAGATTCTTGGCGACATGTTGTTCCCGCTCGTCGAACAGCTGGTGAACGAGAAAGCTTATAAGGTGACTGGGATGCTGCTTGAGCTGGACAAGACTGAAGTTCTGAACCTCGTAGAGTCTCCAGATACTCTCCGGGACAAGGTTGCTGAGGCCATGAAGGTGCTGGAGTTGGAGGCTACCGCCACCGCCGCCGCCGCCGCCGCCGCTTCAGGCTCCGGCGACGGCGACGCCGCCGCGCCGTCCTCCTCCAGCGCCGCCTGAGCGGTGTTGGTGGCCGGATGAATTATCATAATAAGATGAACTTTTGAAGTCGTGTGTTTTGGACTTGGGAACTGTTTAGATGACTGTTCAGTTTATGACTTTAGCAGCTTGCGTTTGCAGATTATTTGGAGTATTGGTTATGGTTGTGTACTCTTTATGTTTATTTTTTTTCTTTTTCATGTGATGGTACACTGTGTGTGGATGGTTAATTAGGATTTTTTGTTGAAATGGATCCTTA] consensusID : consensus_2816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [TTCCTTAGCTTCTCCGAACCCGGAACATACCATACGAGAGATTCTTGCGACATGTTGTTCCCGCTCGTCGAACAGCTGGTGAACGAGAAAGCTTATAAGGTGACTGGGATGCTGCTTGAGCTGGACAAGACTGAAGTTCTGAACCTCGTAGAGTCTCCAGATACTCTCCGGGACAAGGTTGCTGAGGCCATGAAGGTGCTGGAGTTGGAGGCTACCGCCACCGCCGCCGCCGCCGCTTCAGGCTCCGGCGACGGCGACGCCGCCGCGCCGTCCTCCTCCAGCGCCGCCTGAGCGGTGTTGGTGCGCCGGATGAATTATCACTAATTAACGAAGGAACCTTTTGAAGTCGTGTGATATATTGGACCTTGTGAACCTGTTTACGATGACCTGTTCCACGCTTTATGACCTTTAGCACGCCTTGCCGCTTTGCCACGATTTATTTGAAGTGTTTGGTTATGGTTGTGTACCTCTTTATGTTTATTTTTTTTCTTTTTCATGTGATGGTACACTGTGTGGATGGTTAATTAGGATTTTTGTTGAAATGGATCCTTATTTCAGACTCAAAAAAAAAA] [+] EMBL BI803919 [TTCCTTAGCTTCTCCGAACCCGGAACATACCATACGAGAGATTCTTGCGACATGTTGTTCCCGCTCGTCGAACAGCTGGTGAACGAGAAAGCTTATAAGGTGACTGGGATGCTGCTTGAGCTGGACAAGACTGAAGTTCTGAACCTCGTAGAGTCTCCAGATACTCTCCGGGACAAGGTTGCTGAGGCCATGAAGGTGCTGGAGTTGGAGGCTACCGCCACCGCCGCCGCCGCCGCTTCAGGCTCCGGCGACGGCGACGCCGCCGCGCCGTCCTCCTCCAGCGCCGCCTGAGCGGTGTTGGTGCGCCGGATGAATTATCACTAATTAACGAAGGAACCTTTTGAAGTCGTGTGATATATTGGACCTTGTGAACCTGTTTACGATGACCTGTTCCACGCTTTATGACCTTTAGCACGCCTTGCCGCTTTGCCACGATTTATTTGAAGTGTTTGGTTATGGTTGTGTACCTCTTTATGTTTATTTTTTTTCTTTTTCATGTGATGGTACACTGTGTGGATGGTTAATTAGGATTTTTGTTGAAATGGATCCTTATTTCAGACTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2816#0 TGCAAATGGATTGTCGAGATGCTTTGGGTTTGTAAACTTTGAGAAATCAGAATGTGCTAG 60 consensus_2816#1 ------------------------------------------------------------ consensus_2816#0 AAATGCAGTTAAAAATCTCAATGGGAAGTCCATTGGTAATATGGTGTTATATGTTGCAAG 120 consensus_2816#1 ------------------------------------------------------------ consensus_2816#0 GGCTCAGAAAAAATCAGAAAGACAAGCTGAGTTAAAAGCGAAATTTGAGCATGACAAAAA 180 consensus_2816#1 ------------------------------------------------------------ consensus_2816#0 TCAGAAATTTGAGAAGCTTCAAACAGTCAATCTATACTTGAAGAATTTGGATGATGACAT 240 consensus_2816#1 ------------------------------------------------------------ consensus_2816#0 CAATGATGAGCATCTTAGGAAGTTGTTTGAATGTTTTGGTGAGGTAGCATCATGCAAGGT 300 consensus_2816#1 ------------------------------------------------------------ consensus_2816#0 CATGCTTGATTCGCATGGAAGGAGCAAGGGTTGTGGATTTGTATCTTTTGCAACTGTTGA 360 consensus_2816#1 ------------------------------------------------------------ consensus_2816#0 AGACGCTAACAATGCTATTTTAAAAATGAACGGGAAAATGGTTGGGAAAAAGCCATTATA 420 consensus_2816#1 ------------------------------------------------------------ consensus_2816#0 TGTTGCCGTAGCTCAACGGAAGGAGGAGAGAAAGGCATTTTTAGCGGCACATTTTGCTCG 480 consensus_2816#1 ------------------------------------------------------------ consensus_2816#0 TGTTAGAGCCCTAGCAACAATGGCACCTACATTAGGGCCAAACATTGCTCCCCATCAGTT 540 consensus_2816#1 ------------------------------------------------------------ consensus_2816#0 CAATTTTGGCCATGGTGTGCCTGCCTTGTTCCCACCACCACCACCTGCAGGCTTTGGGTT 600 consensus_2816#1 ------------------------------------------------------------ consensus_2816#0 CCAACCAAATTTTGTTCCAAACATGATGATGCCATATAACATGCAAAGGCAGCCTGGCCA 660 consensus_2816#1 ------------------------------------------------------------ consensus_2816#0 GAGGAGTGGTCCTCCGCATGGAGGAATGCCTAGACATCTGCATAATCCTCACCAGATGTT 720 consensus_2816#1 ------------------------------------------------------------ consensus_2816#0 TCACCAAAATGCCAACCAGGGCTTCAGACACATGCCAAATCGTAGGAATGGTGTGGCCAA 780 consensus_2816#1 ------------------------------------------------------------ consensus_2816#0 CCCAGCAATGTTGCATCAGCACCATCGCTTCTCTAGCCCAATGCAGCCAATGCAACAAGC 840 consensus_2816#1 ------------------------------------------------------------ consensus_2816#0 TGTCAAGCATGTGGTGCCCGTGGGGGAATTGCAAGCTCCAAGCAATAACCTTCAGACTTC 900 consensus_2816#1 ---------------------------------------------------------TTC 3 *** consensus_2816#0 CTTGGCTTCTGCGAACCCGGAACA-ACAA--CGAGAGATTCTTGGCGACATGTTGTTCCC 957 consensus_2816#1 CTTAGCTTCTCCGAACCCGGAACATACCATACGAGAGATTCTTG-CGACATGTTGTTCCC 62 *** ****** ************* ** * ************* *************** consensus_2816#0 GCTCGTCGAACAGCTGGTGAACGAGAAAGCTTATAAGGTGACTGGGATGCTGCTTGAGCT 1017 consensus_2816#1 GCTCGTCGAACAGCTGGTGAACGAGAAAGCTTATAAGGTGACTGGGATGCTGCTTGAGCT 122 ************************************************************ consensus_2816#0 GGACAAGACTGAAGTTCTGAACCTCGTAGAGTCTCCAGATACTCTCCGGGACAAGGTTGC 1077 consensus_2816#1 GGACAAGACTGAAGTTCTGAACCTCGTAGAGTCTCCAGATACTCTCCGGGACAAGGTTGC 182 ************************************************************ consensus_2816#0 TGAGGCCATGAAGGTGCTGGAGTTGGAGGCTACCGCCACCGCCGCCGCCGCCGCCGCCGC 1137 consensus_2816#1 TGAGGCCATGAAGGTGCTGGAGTTGGAGGCTACCGCCACCGCCGCCGCCGCCGC------ 236 ****************************************************** consensus_2816#0 TTCAGGCTCCGGCGACGGCGACGCCGCCGCGCCGTCCTCCTCCAGCGCCGCCTGAGCGGT 1197 consensus_2816#1 TTCAGGCTCCGGCGACGGCGACGCCGCCGCGCCGTCCTCCTCCAGCGCCGCCTGAGCGGT 296 ************************************************************ consensus_2816#0 GTTGGTG-GCCGGATGAATTATCA-----TAATAAGATGAACTTTTGAAGTCGTGTGTT- 1250 consensus_2816#1 GTTGGTGCGCCGGATGAATTATCACTAATTAACGAAGGAACCTTTTGAAGTCGTGTGATA 356 ******* **************** *** * * **************** * consensus_2816#0 --TTGGAC-TTGGGAAC-TGTTTA-GATGAC-TGTTCAG---TTTATGAC-TTTAGCAG- 1299 consensus_2816#1 TATTGGACCTTGTGAACCTGTTTACGATGACCTGTTCCACGCTTTATGACCTTTAGCACG 416 ****** *** **** ****** ****** ***** ******** ******* consensus_2816#0 -CTTGC-GTTT----GCAGATTATTTGGAGTATT-GGTTATGGTTGTGTAC-TCTTTATG 1351 consensus_2816#1 CCTTGCCGCTTTGCCACGATTTATTTGAAGTGTTTGGTTATGGTTGTGTACCTCTTTATG 476 ***** * ** * ******* *** ** **************** ******** consensus_2816#0 TTTATTTTTTTTCTTTTTCATGTGATGGTACACTGTGTGTGGATGGTTAATTAGGATTTT 1411 consensus_2816#1 TTTATTTTTTTTCTTTTTCATGTGATGGTACACTGTGTG--GATGGTTAATTAGGATTTT 534 *************************************** ******************* consensus_2816#0 TTGTTGAAATGGATCCTTA-------------------- 1430 consensus_2816#1 T-GTTGAAATGGATCCTTATTTCAGACTCAAAAAAAAAA 572 * ***************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||