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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2084 fasta sequence
[GCTCGATTTCGGGGGCGGATCAGACGGCCGCGAGCGAATCCGGGGATCTCCCCCCTCCCTCCCGCTCTGTTCCTGCCTCTGCTCCCCGCCCGTTTCCTCTCAATCCTTCCTTCTCCCTGCTTCTCTCCCTCGCGGAAAAAAAAAAGAAAAGAAAAGGAAAAGGGGGAGTGGAAAAGATCTCCTCTTCGTCCTGTTTCTGTTGGCGTCGCTGCTCGGCAGCTCGTTCGCTAGCTACCACCCAAAAGGCGGCAGTCGATCGCCTGATAGCTCAGCCGCTCTCCTCTGTCGCTTCCGAGCTCTTGTGCCGCCGCGCGCCGGCGAGGATCTGTCGACCGAGAGAGGAGCCACCCGCCGTCCAAGAAGAGGAGGAAGAAGATCATCTTTGCGTCAGAAGGAGCAGTGACGAGATACCACTGTCCGCGTGGTCACAAGCATTGCTGCGAGACTGTGATTGGCGGGAGTTGCTTTGGATGAGCAATAGCCTGATGGTGGCTTGCTAACTGGGAAGGAGGATTTGCGCGGTTCTGGACTACTCGAGAGGCTAGGAAATGCTTGCGTGCATCGCGTGTTCGACCAAGGACGGCGGGGAGGGCGGGCACCGGTCCGCCACCGCCACGCCCAACTCCGGCAAGTCTCTGACTTCACAGTTGAAGGACATGGTGCTCAAGTTCTCCGGCAGCGGCAGGCACCAATACAAGTCCGGCGGGAGCCCGTCGTTGAGGACCAGCCGCTTCCACCGCTCCAGCCGCCTCGCCGCGTACCCGGGCATCATCGACGAGTCGGGCTTCACGTCGGACGGGGCCGGCGAGGCCTATACTTACATGAGGACGACGACGGCGAGCGCCGGCGCCCGGGCCGCGCCGTCGACGTGGGACTTGCCGCCCAAGGTGAACCACCGCAGCTTCCAGCCGCGCGTGATCAGGAGCCCGAGCGCGAGCGGGGTACCGAGCATCGGGGAGGAAGACTACGACGACGACGACGACGACGATGACGAGGAGACAGTCCTCCTGGAGGAGGACCGCGTGCCGCGGGAGTGGACGGCGCAGGTGGAGCCCGGCGTGCAGATCACCTTCGTCTCCATCCCCGGCGGCGCCGGCAACGATCTGAAGCGCATCCGTTTCAGCCGGGAGATGTTTAACAAGTGGGAGGCGCAGCGGTGGTGGGGGGAGAACTACGACCGCGTGGTGGAGCTCTACAACGTGCAGACGTTCAGCCGGCAGCAGGGCTTCTCGACGCCGACGTCCTCCGTCGACGAAGCCATGCAGAGAGATTCGTTCTACTCCCGCGTCGGCTCGACGAGGGAGAGCCCGGCGATGATGATGCCGCCGCCGCCGCCGCTGCCGTCGTCGGGTGCTGGCAGGGAGCACCCGATCAGCCGGACAGCGTCGAGCAAGGCGCAGCTGTCGTCGTCGTCGTCGGTGGCGGCGGCTCGGCCGCCGTTCTACCCGTCCACGGCCGTGCCGGACCCGTCCGACCACGTGTGGGCGCACCACTTCAACCTCCTCAACTCCGCGGCCGCCGGACCAGCGGCGCCGTACGACCCGTCGCGCGGCACGACGTCGTCCCGGGACGAGGCGTCCGTGTCCATCAGCAACGCGAGCGACCTGGAGGCCACGGAGTGGGTGGAGCAGGACGAGCCTGGGGTGTCCATCACCATCCGCGAGTTCGGCGACGGCACCCGCGAGCTCCGCCGCGTCCGGTTCAGCCGCGAGAGATTTGGCGAGGAGCGGGCCAAGGTGTGGTGGGAGCAGAACCGGGACCGGATACACGCGCAGTATCTGTGAGCTAACGCGAGACCCATCGTTGATGAGAGTGAAGTGATACTGTGACAGAAGCTAACGCGTCGCCGGGAAGAATAGTTAAGAGTGTGATGATACTACTACTTTGCCGCTGCTACGGTTAGTGCTACTAGGTTTTTTTTACAGGGTGAATATAGGATGAGGGGGAAGGATGCTGTGGTCTGAGAAGCAGCAGGCTCAGTCAAGCTGCTACTCTTGTTAACTGACCACTTTGGTCTTCCGTTTGTAACCTTTATGGACAGGGTGTTCGTTTAATTCGTTTGTTTTAGCATGGTTTCATGTGAT]
[+] EMBL AK101598 [GCTCGATTTCGGGGGCGGATCAGACGGCCGCGAGCGAATCCGGGGATCTCCCCCCTCCCTCCCGCTCTGTTCCTGCCTCTGCTCCCCGCCCGTTTCCTCTCAATCCTTCCTTCTCCCTGCTTCTCTCCCTCGCGGAAAAAAAAAAGAAAAGAAAAGGAAAAGGGGGAGTGGAAAAGATCTCCTCTTCGTCCTGTTTCTGTTGGCGTCGCTGCTCGGCAGCTCGTTCGCTAGCTACCACCCAAAAGGCGGCAGTCGATCGCCTGATAGCTCAGCCGCTCTCCTCTGTCGCTTCCGAGCTCTTGTGCCGCCGCGCGCCGGCGAGGATCTGTCGACCGAGAGAGGAGCCACCCGCCGTCCAAGAAGAGGAGGAAGAAGATCATCTTTGCGTCAGAAGGAGCAGTGACGAGATACCACTGTCCGCGTGGTCACAAGCATTGCTGCGAGACTGTGATTGGCGGGAGTTGCTTTGGATGAGCAATAGCCTGATGGTGGCTTGCTAACTGGGAAGGAGGATTTGCGCGGTTCTGGACTACTCGAGAGGCTAGGAAATGCTTGCGTGCATCGCGTGTTCGACCAAGGACGGCGGGGAGGGCGGGCACCGGTCCGCCACCGCCACGCCCAACTCCGGCAAGTCTCTGACTTCACAGTTGAAGGACATGGTGCTCAAGTTCTCCGGCAGCGGCAGGCACCAATACAAGTCCGGCGGGAGCCCGTCGTTGAGGACCAGCCGCTTCCACCGCTCCAGCCGCCTCGCCGCGTACCCGGGCATCATCGACGAGTCGGGCTTCACGTCGGACGGGGCCGGCGAGGCCTATACTTACATGAGGACGACGACGGCGAGCGCCGGCGCCCGGGCCGCGCCGTCGACGTGGGACTTGCCGCCCAAGGTGAACCACCGCAGCTTCCAGCCGCGCGTGATCAGGAGCCCGAGCGCGAGCGGGGTACCGAGCATCGGGGAGGAAGACTACGACGACGACGACGACGACGATGACGAGGAGACAGTCCTCCTGGAGGAGGACCGCGTGCCGCGGGAGTGGACGGCGCAGGTGGAGCCCGGCGTGCAGATCACCTTCGTCTCCATCCCCGGCGGCGCCGGCAACGATCTGAAGCGCATCCGTTTCAGCCGGGAGATGTTTAACAAGTGGGAGGCGCAGCGGTGGTGGGGGGAGAACTACGACCGCGTGGTGGAGCTCTACAACGTGCAGACGTTCAGCCGGCAGCAGGGCTTCTCGACGCCGACGTCCTCCGTCGACGAAGCCATGCAGAGAGATTCGTTCTACTCCCGCGTCGGCTCGACGAGGGAGAGCCCGGCGATGATGATGCCGCCGCCGCCGCCGCTGCCGTCGTCGGGTGCTGGCAGGGAGCACCCGATCAGCCGGACAGCGTCGAGCAAGGCGCAGCTGTCGTCGTCGTCGTCGGTGGCGGCGGCTCGGCCGCCGTTCTACCCGTCCACGGCCGTGCCGGACCCGTCCGACCACGTGTGGGCGCACCACTTCAACCTCCTCAACTCCGCGGCCGCCGGACCAGCGGCGCCGTACGACCCGTCGCGCGGCACGACGTCGTCCCGGGACGAGGCGTCCGTGTCCATCAGCAACGCGAGCGACCTGGAGGCCACGGAGTGGGTGGAGCAGGACGAGCCTGGGGTGTCCATCACCATCCGCGAGTTCGGCGACGGCACCCGCGAGCTCCGCCGCGTCCGGTTCAGCCGCGAGAGATTTGGCGAGGAGCGGGCCAAGGTGTGGTGGGAGCAGAACCGGGACCGGATACACGCGCAGTATCTGTGAGCTAACGCGAGACCCATCGTTGATGAGAGTGAAGTGATACTGTGACAGAAGCTAACGCGTCGCCGGGAAGAATAGTTAAGAGTGTGATGATACTACTACTTTGCCGCTGCTACGGTTAGTGCTACTAGGTTTTTTTTACAGGGTGAATATAGGATGAGGGGGAAGGATGCTGTGGTCTGAGAAGCAGCAGGCTCAGTCAAGCTGCTACTCTTGTTAACTGACCACTTTGGTCTTCCGTTTGTAACCTTTATGGACAGGGTGTTCGTTTAATTCGTTTGTTTTAGCATGGTTTCATGTGAT]
consensusID : consensus_2844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence
[CTTNCTCTTTGGGAGGGAGGTACCTGCGTCCCGGGAGTGGACGGCNCAGGTGGAGCCCGTGCTGTCAGATCACCTTCGTCTCCATCCCCGCGGCTCCGCAACGATCTGAAGCGCATCCGTTTCAGCCGGGAGATGTTTAACAANTGGGAGGCTCACGGTGGTGGGGGGAGAACTACGACCGCGTGGTGGAGCTCTACAACGTGCAGACGTTCAGCCGGCAGCAGGGCTTCTCGACGCCGACGTCCTCCGTCGACGAAGCCATGCAGAGAGATTCGTTCTACTCCCGCGTCGGCTCGACGAGGGAGAGCCCGGCGATGATGATGCCGCCCCCCGCCGCTGCCGTCGTCGGGTGCTGGCAGGGAGCACCCGATCAGCCGGACAGCGTCGAGCAAGGCGCAGCTGTCGTCGTCNTCGTCGTGCGCGGCTCGCCCCGTTCTACCCGTCCACGCCGTGCCGGACCCGTCCGACCACGTNTGGCGCACCACTTCAACCTCCTCAACTCCCG]
[+] EMBL BI806546 [CTTNCTCTTTGGGAGGGAGGTACCTGCGTCCCGGGAGTGGACGGCNCAGGTGGAGCCCGTGCTGTCAGATCACCTTCGTCTCCATCCCCGCGGCTCCGCAACGATCTGAAGCGCATCCGTTTCAGCCGGGAGATGTTTAACAANTGGGAGGCTCACGGTGGTGGGGGGAGAACTACGACCGCGTGGTGGAGCTCTACAACGTGCAGACGTTCAGCCGGCAGCAGGGCTTCTCGACGCCGACGTCCTCCGTCGACGAAGCCATGCAGAGAGATTCGTTCTACTCCCGCGTCGGCTCGACGAGGGAGAGCCCGGCGATGATGATGCCGCCCCCCGCCGCTGCCGTCGTCGGGTGCTGGCAGGGAGCACCCGATCAGCCGGACAGCGTCGAGCAAGGCGCAGCTGTCGTCGTCNTCGTCGTGCGCGGCTCGCCCCGTTCTACCCGTCCACGCCGTGCCGGACCCGTCCGACCACGTNTGGCGCACCACTTCAACCTCCTCAACTCCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2844#0 GCTCGATTTCGGGGGCGGATCAGACGGCCGCGAGCGAATCCGGGGATCTCCCCCCTCCCT 60
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 CCCGCTCTGTTCCTGCCTCTGCTCCCCGCCCGTTTCCTCTCAATCCTTCCTTCTCCCTGC 120
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 TTCTCTCCCTCGCGGAAAAAAAAAAGAAAAGAAAAGGAAAAGGGGGAGTGGAAAAGATCT 180
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 CCTCTTCGTCCTGTTTCTGTTGGCGTCGCTGCTCGGCAGCTCGTTCGCTAGCTACCACCC 240
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 AAAAGGCGGCAGTCGATCGCCTGATAGCTCAGCCGCTCTCCTCTGTCGCTTCCGAGCTCT 300
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 TGTGCCGCCGCGCGCCGGCGAGGATCTGTCGACCGAGAGAGGAGCCACCCGCCGTCCAAG 360
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 AAGAGGAGGAAGAAGATCATCTTTGCGTCAGAAGGAGCAGTGACGAGATACCACTGTCCG 420
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 CGTGGTCACAAGCATTGCTGCGAGACTGTGATTGGCGGGAGTTGCTTTGGATGAGCAATA 480
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 GCCTGATGGTGGCTTGCTAACTGGGAAGGAGGATTTGCGCGGTTCTGGACTACTCGAGAG 540
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 GCTAGGAAATGCTTGCGTGCATCGCGTGTTCGACCAAGGACGGCGGGGAGGGCGGGCACC 600
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 GGTCCGCCACCGCCACGCCCAACTCCGGCAAGTCTCTGACTTCACAGTTGAAGGACATGG 660
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 TGCTCAAGTTCTCCGGCAGCGGCAGGCACCAATACAAGTCCGGCGGGAGCCCGTCGTTGA 720
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 GGACCAGCCGCTTCCACCGCTCCAGCCGCCTCGCCGCGTACCCGGGCATCATCGACGAGT 780
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 CGGGCTTCACGTCGGACGGGGCCGGCGAGGCCTATACTTACATGAGGACGACGACGGCGA 840
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 GCGCCGGCGCCCGGGCCGCGCCGTCGACGTGGGACTTGCCGCCCAAGGTGAACCACCGCA 900
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 GCTTCCAGCCGCGCGTGATCAGGAGCCCGAGCGCGAGCGGGGTACCGAGCATCGGGGAGG 960
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 AAGACTACGACGACGACGACGACGACGATGACGAGGAGACAGTCCTCCTGGAGGAGGACC 1020
consensus_2844#1 -------------------------------------CTTNCTCTTTGGGAGGGAGGTAC 23
** * * ***** *
consensus_2844#0 GCGTGCCGCGGGAGTGGACGGCGCAGGTGGAGCCCGGCGTG-CAGATCACCTTCGTCTCC 1079
consensus_2844#1 CTGCGTCCCGGGAGTGGACGGCNCAGGTGGAGCCCGTGCTGTCAGATCACCTTCGTCTCC 83
* * * ************** ************* ** ******************
consensus_2844#0 ATCCCCGGCGGCGCCGGCAACGATCTGAAGCGCATCCGTTTCAGCCGGGAGATGTTTAAC 1139
consensus_2844#1 ATCCCCG-CGGCTCCG-CAACGATCTGAAGCGCATCCGTTTCAGCCGGGAGATGTTTAAC 141
******* **** *** *******************************************
consensus_2844#0 AAGTGGGAGGCGCAGCGGTGGTGGGGGGAGAACTACGACCGCGTGGTGGAGCTCTACAAC 1199
consensus_2844#1 AANTGGGAGGCTCA-CGGTGGTGGGGGGAGAACTACGACCGCGTGGTGGAGCTCTACAAC 200
** ******** ** *********************************************
consensus_2844#0 GTGCAGACGTTCAGCCGGCAGCAGGGCTTCTCGACGCCGACGTCCTCCGTCGACGAAGCC 1259
consensus_2844#1 GTGCAGACGTTCAGCCGGCAGCAGGGCTTCTCGACGCCGACGTCCTCCGTCGACGAAGCC 260
************************************************************
consensus_2844#0 ATGCAGAGAGATTCGTTCTACTCCCGCGTCGGCTCGACGAGGGAGAGCCCGGCGATGATG 1319
consensus_2844#1 ATGCAGAGAGATTCGTTCTACTCCCGCGTCGGCTCGACGAGGGAGAGCCCGGCGATGATG 320
************************************************************
consensus_2844#0 ATGCCGCCGCCGCCGCCGCTGCCGTCGTCGGGTGCTGGCAGGGAGCACCCGATCAGCCGG 1379
consensus_2844#1 ATGCCGCCCCC--CGCCGCTGCCGTCGTCGGGTGCTGGCAGGGAGCACCCGATCAGCCGG 378
******** ** ***********************************************
consensus_2844#0 ACAGCGTCGAGCAAGGCGCAGCTGTCGTCGTCGTCGTCGGTGGCGGCGGCTCGGCCGCCG 1439
consensus_2844#1 ACAGCGTCGAGCAAGGCGCAGCTGTCGTCGTCNTCGTCGT--GCG-CGGCTCGCC--CCG 433
******************************** ****** *** ******* * ***
consensus_2844#0 TTCTACCCGTCCACGGCCGTGCCGGACCCGTCCGACCACGTGTGGGCGCACCACTTCAAC 1499
consensus_2844#1 TTCTACCCGTCCACG-CCGTGCCGGACCCGTCCGACCACGTNTGG-CGCACCACTTCAAC 491
*************** ************************* *** **************
consensus_2844#0 CTCCTCAACTCCGCGGCCGCCGGACCAGCGGCGCCGTACGACCCGTCGCGCGGCACGACG 1559
consensus_2844#1 CTCCTCAACTCC-CG--------------------------------------------- 505
************ **
consensus_2844#0 TCGTCCCGGGACGAGGCGTCCGTGTCCATCAGCAACGCGAGCGACCTGGAGGCCACGGAG 1619
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 TGGGTGGAGCAGGACGAGCCTGGGGTGTCCATCACCATCCGCGAGTTCGGCGACGGCACC 1679
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 CGCGAGCTCCGCCGCGTCCGGTTCAGCCGCGAGAGATTTGGCGAGGAGCGGGCCAAGGTG 1739
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 TGGTGGGAGCAGAACCGGGACCGGATACACGCGCAGTATCTGTGAGCTAACGCGAGACCC 1799
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 ATCGTTGATGAGAGTGAAGTGATACTGTGACAGAAGCTAACGCGTCGCCGGGAAGAATAG 1859
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 TTAAGAGTGTGATGATACTACTACTTTGCCGCTGCTACGGTTAGTGCTACTAGGTTTTTT 1919
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 TTACAGGGTGAATATAGGATGAGGGGGAAGGATGCTGTGGTCTGAGAAGCAGCAGGCTCA 1979
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 GTCAAGCTGCTACTCTTGTTAACTGACCACTTTGGTCTTCCGTTTGTAACCTTTATGGAC 2039
consensus_2844#1 ------------------------------------------------------------
consensus_2844#0 AGGGTGTTCGTTTAATTCGTTTGTTTTAGCATGGTTTCATGTGAT 2084
consensus_2844#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||