These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1213 fasta sequence [ATCGCCTCGCCGCAACCGCGACCGCGCCGGCGAGCTGCACCGCCCCCGTCGAAGTTTCCCGCGGAGCTCGTCGTTCTCGAGCCTCTTCCGATGCTTTCTGCACGGCGAGCCGGCGCCGGCGGCGCCGCCGGGAAGACGTCGCATGCTCGCCCCTGCAACCCTGGTTACCCGCGGCGCTCGTCGGTCCCGATGACCGGCGGCGACGCGACTAGACCAGCCGTGGCGAGGGCGCTTCGCCTTCCGGGTAGTGGGGGAGGGGCGGGTTTCCAGCGGCGGGAGCCCCACCGATGGCTCCGTCCCTGCTCCTCCTCCCGGAGTGGAGATGGCGCCGCCGCCGTTCTCGCCTCGCGATCCGGGAGCAGCGACATGGGCCTCGGGGTTTCTTCTTTCTCGCCGTGCTCGCTTCCCCGCCGCGTCGACGCTCCTCGCCGGCGGCCAGTGTGGTGTTCGCCGGCTGCTCCTCCTCCTCCTCCTCCTCCTCGTGTGGAGGTGCAGAGCGTCCGGAAGAGGCGAATGAGCGAGGAATGGGAGGCGTTGAAGGCAGCCATCGCCGACATGTTCCGGCCCTTGCTGCGAAACCTAGCTGACATTTGCTCTCTCCGCAGCGCCTACGACTTCGAGGACTATCAAATCGGCATGCTCTTTGGTGCGTTTCTCGGATATGTCGGGTGCTACCAGCTGTGGAAGGCGGCTCCTTCCGTCTTCGTTGATGCTGCCCTTGCCTTTGTGTTTTACAAGCTCAGCGTTGTGTCCTCAGAGCTGCACCGGCAGCGCAAGACAAACAGCTTGATCACGCGGCTTAAATTCGGGACCATACTTATCATGGTTATGAAAGACATCAAGAAGAACTATGTACTCCTGGACATTATTAGAATGCCGGTTTTCTTCCTCTACATTTGTGCGTTCGTATTCGATGTTGCTGGTATGAAGAAGTATGCCAGGCGCTCACTTATTTCATTGTTTAATCTGCTGAAATCTAGAGGTGGCATACAAGAAATATATAGGATTATGTGGTATCCTGGTTATATATCTCCATATGATGATTCTGCTGACTGGTGATGCATTTGTGTGAGTGGTTCCCACTTAGGAGCTTGTTCTAGGAAGGATGGAGCTTGTTCTAGGAAGGATGCCCTCCCCTTCACAAAGTTTTGTAAAGTATAATAACGAATAAATAGCTATGAACGTATGGTGAGTCTCTACAAAAGAAACATTC] [+] EMBL AK102989 [ATCGCCTCGCCGCAACCGCGACCGCGCCGGCGAGCTGCACCGCCCCCGTCGAAGTTTCCCGCGGAGCTCGTCGTTCTCGAGCCTCTTCCGATGCTTTCTGCACGGCGAGCCGGCGCCGGCGGCGCCGCCGGGAAGACGTCGCATGCTCGCCCCTGCAACCCTGGTTACCCGCGGCGCTCGTCGGTCCCGATGACCGGCGGCGACGCGACTAGACCAGCCGTGGCGAGGGCGCTTCGCCTTCCGGGTAGTGGGGGAGGGGCGGGTTTCCAGCGGCGGGAGCCCCACCGATGGCTCCGTCCCTGCTCCTCCTCCCGGAGTGGAGATGGCGCCGCCGCCGTTCTCGCCTCGCGATCCGGGAGCAGCGACATGGGCCTCGGGGTTTCTTCTTTCTCGCCGTGCTCGCTTCCCCGCCGCGTCGACGCTCCTCGCCGGCGGCCAGTGTGGTGTTCGCCGGCTGCTCCTCCTCCTCCTCCTCCTCCTCGTGTGGAGGTGCAGAGCGTCCGGAAGAGGCGAATGAGCGAGGAATGGGAGGCGTTGAAGGCAGCCATCGCCGACATGTTCCGGCCCTTGCTGCGAAACCTAGCTGACATTTGCTCTCTCCGCAGCGCCTACGACTTCGAGGACTATCAAATCGGCATGCTCTTTGGTGCGTTTCTCGGATATGTCGGGTGCTACCAGCTGTGGAAGGCGGCTCCTTCCGTCTTCGTTGATGCTGCCCTTGCCTTTGTGTTTTACAAGCTCAGCGTTGTGTCCTCAGAGCTGCACCGGCAGCGCAAGACAAACAGCTTGATCACGCGGCTTAAATTCGGGACCATACTTATCATGGTTATGAAAGACATCAAGAAGAACTATGTACTCCTGGACATTATTAGAATGCCGGTTTTCTTCCTCTACATTTGTGCGTTCGTATTCGATGTTGCTGGTATGAAGAAGTATGCCAGGCGCTCACTTATTTCATTGTTTAATCTGCTGAAATCTAGAGGTGGCATACAAGAAATATATAGGATTATGTGGTATCCTGGTTATATATCTCCATATGATGATTCTGCTGACTGGTGATGCATTTGTGTGAGTGGTTCCCACTTAGGAGCTTGTTCTAGGAAGGATGGAGCTTGTTCTAGGAAGGATGCCCTCCCCTTCACAAAGTTTTGTAAAGTATAATAACGAATAAATAGCTATGAACGTATGGTGAGTCTCTACAAAAGAAACATTC] consensusID : consensus_2845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 978 fasta sequence [CAATTGTATAGTTTTGAGAAAATCCATGAAATGCCATCGACAAGCACTCTAATCCTAGAAATGCCATCGACAAAAGCAACTTCCCAGAAATACCATTGTACAAGCCTCTTTCTCCCAAAAATACCATCATAGTCAACTCTACACCGTTACAACCGTTATTTTTTTTGATAATGACCATTTTACCCTCAGTGCAGGATATACCAGTTTTCACGGTAAAAGAAAAAGAAAGATGAAACGGTGAAAATTTCTAACGCTAACCCTAAACCGAACCCAATCCAGGCGGCTCTCCCGGCGGCGGCGCGGCGGTCCACGGCGGCGGTGGTGCGGGGCTCGGCAACGGCGGCGAGGAGGTTGCAGGCGACGGCGAGGCGGCGGTCCACGGCGGCGGTGCGGCGGTCCACAGCGGTGGCGAGGGAGAGGCGGGTTTCCAGCGGGGTGCGGGGGCTCGGCGACGGCGGCGTGGCAGCGGTCCACAGCGGCGACGAGGAGGTTGCAGGCGGCGGCGAGGCTGTCCACAGCGGCGGTGGCGCGGGGCTCGGCGGCAGTCCACGGTGGCGGCGCGGCGGTCCACAGCGGAGGCGAGGGAGAGACGGGTTTCCAGCGGTGGGTTTCCAGCCTTCCTGGTAGTGGGGGAGAGGCGGGTTTCCAGCGGCGGAAGCCCCACCGATGGCTCCATCCCTGCTCCTCCTCCCAAAGAATAGCTACCGGACCTCGGAGTGGAGATGGCGCTGTCGCCGTTCTTGCCTCGCGACCCGGGAGCAGTGGACATTGGCCTCGGGGTTTTTTCTTTCTCGCTGTGCTCACTTCCCCACCGCATCGACGCTCCTCGCCGACGACCAGTGGTAGGTGAAGTTTCTTTTGGATTTCTCTTACGATGCAGAAATGCTGAGTTGCTGCATGTGCAGTGAGTCCGGAAGCGGCGAATGTGTGAAATTTTTTTTGAATCTGATTTCTGTGAATTTAATTCTGAAATGATTT] [+] EMBL AK111256 [CAATTGTATAGTTTTGAGAAAATCCATGAAATGCCATCGACAAGCACTCTAATCCTAGAAATGCCATCGACAAAAGCAACTTCCCAGAAATACCATTGTACAAGCCTCTTTCTCCCAAAAATACCATCATAGTCAACTCTACACCGTTACAACCGTTATTTTTTTTGATAATGACCATTTTACCCTCAGTGCAGGATATACCAGTTTTCACGGTAAAAGAAAAAGAAAGATGAAACGGTGAAAATTTCTAACGCTAACCCTAAACCGAACCCAATCCAGGCGGCTCTCCCGGCGGCGGCGCGGCGGTCCACGGCGGCGGTGGTGCGGGGCTCGGCAACGGCGGCGAGGAGGTTGCAGGCGACGGCGAGGCGGCGGTCCACGGCGGCGGTGCGGCGGTCCACAGCGGTGGCGAGGGAGAGGCGGGTTTCCAGCGGGGTGCGGGGGCTCGGCGACGGCGGCGTGGCAGCGGTCCACAGCGGCGACGAGGAGGTTGCAGGCGGCGGCGAGGCTGTCCACAGCGGCGGTGGCGCGGGGCTCGGCGGCAGTCCACGGTGGCGGCGCGGCGGTCCACAGCGGAGGCGAGGGAGAGACGGGTTTCCAGCGGTGGGTTTCCAGCCTTCCTGGTAGTGGGGGAGAGGCGGGTTTCCAGCGGCGGAAGCCCCACCGATGGCTCCATCCCTGCTCCTCCTCCCAAAGAATAGCTACCGGACCTCGGAGTGGAGATGGCGCTGTCGCCGTTCTTGCCTCGCGACCCGGGAGCAGTGGACATTGGCCTCGGGGTTTTTTCTTTCTCGCTGTGCTCACTTCCCCACCGCATCGACGCTCCTCGCCGACGACCAGTGGTAGGTGAAGTTTCTTTTGGATTTCTCTTACGATGCAGAAATGCTGAGTTGCTGCATGTGCAGTGAGTCCGGAAGCGGCGAATGTGTGAAATTTTTTTTGAATCTGATTTCTGTGAATTTAATTCTGAAATGATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2845#0 ATCGCCTCGCCGCAACCGCGACCGCGCCGGCGAGCTGCACCGCCCCCGTCGAAGTTTCCC 60 consensus_2845#1 -------------------------------CAATTGTATAGTTTTGA--GAAAATCCAT 27 * ** * * *** * * consensus_2845#0 GCGGAGC--TCGTC--GTTCTCGAGCCTCTTCCGATGCTTTCTGCACGGCGAGCCGGCGC 116 consensus_2845#1 GAAATGCCATCGACAAGCACTCTAATC-CTAGAAATGCCATCGACAAAAGCAACT--TCC 84 * ** *** * * *** * * ** **** ** ** * * * consensus_2845#0 CGGCGGCGCCGCCGGGAAGACGTCGCATGCTCGCCCCTGCAACCCTGGTTACCCGCGGCG 176 consensus_2845#1 CAGAAATACCATTGTACAAGCCTCTTTCTCCCAAAAATACCATCATAGTCAACTCTACAC 144 * * ** * * * ** * * * * * * * ** * * consensus_2845#0 CTCGTCGGTCCCGATGACCGGCGGCGACGCGACTAGACCAGCCGTGGCG-AGGGCGCTTC 235 consensus_2845#1 CGTTACAACCGTTATTTTTTTTGATAATG--ACCATTTTACCCTCAGTGCAGGATATACC 202 * * * ** * * * ** * * ** * * *** * consensus_2845#0 GCCTTCCGGGTAGTGGGGGAGGGGCGGGTTTCCAGCGGCGGGAGCCCCACCGATGGCTCC 295 consensus_2845#1 AGTTTTCA--CGGTAAAAGAAAAAGAAAGATGAAACGGTGAAAATTTC-----TAACGCT 255 ** * ** ** * * *** * * * * * * consensus_2845#0 GTCCCTGCTCCTCCTCCCGGAGTGGAGATGGCGCCGCCGCCGTTCTCGCCTCGCGATCCG 355 consensus_2845#1 AACCCTAAACCGAACCC---AATCCAGGCGGCTCTCCCGGCGGCGGCGCGGCGGTCCACG 312 **** ** ** * * ** *** * *** ** *** ** ** consensus_2845#0 GGAGCAGCGACATGGGCCTCGGGGTTTCTTCTTTCTCGCCGTGCTCGCTTCCC-CGCCGC 414 consensus_2845#1 GCGGCGGTGGTGCGGGGCTCGG-----CAACGGCGGCGAGGAGGTTGCAGGCGACGGCGA 367 * ** * * *** ***** * * ** * * * ** * ** ** consensus_2845#0 GTCGACGCTCCTCGCCGGCGGCCAGTGTGGTGTTCGCCGGCTGCTCCTCCTCCTCCTCCT 474 consensus_2845#1 GGCGGCGGTCCACGGCGGCGG----TGCGGCGGTCCACAGCGGTGGCGAGGGAGAGGCGG 423 * ** ** *** ** ****** ** ** * ** * ** * * * consensus_2845#0 CCTCCTCGTGTGGAGGTGCAGAGCGTCCGGAAGAGGCGAATGAGCGAGGAATGGGAGGCG 534 consensus_2845#1 GTTTCCAGCG---GGGTGCGGGG-GCTCGGCGACGGCG----------GCGTGGCAGCGG 469 * * * * ***** * * * *** **** * *** ** * consensus_2845#0 TTGAAGGCAGCCATCGCCGACATGTTCCGGCCCTTGCTGCGAAACCTAGCTGACATTTGC 594 consensus_2845#1 TCCACAGCGGCGA---CGAGGAGGTTGCAGGC--GGCGGCGAGGCT--GTCCACAGCGGC 522 * * ** ** * * * *** * * * ** **** * * *** ** consensus_2845#0 TCTCTCCGCAGCGCCTACGACTTCGAGGACTATCAAATCGGCATGCTCTTTGGTGCGTTT 654 consensus_2845#1 GGTGGCGCGGGGCTCGGCGGCAGTCCACGGTGGCGGCGCGGC--GGTCCACAGCGGAGGC 580 * * * * ** * * * **** * ** * * consensus_2845#0 CTCGGATATGTCGGGTGCTACCAGCTGTGGAAGGCGGCTCCTTCCGTCTTCGTTGATGCT 714 consensus_2845#1 GAGGGAGA-GACGGGT--TTCCAGCGGTGGGTTTCCAGCCTTCCTGGTAGTGGGGGAGAG 637 *** * * ***** * ***** **** * * * * * * * * consensus_2845#0 GCCCTTGCCTTTGTGTTTTACAAGCTCAGCGTTGTGTCCTCAGAGCTGCACCGGCAGCGC 774 consensus_2845#1 GC---GGGTTTCCAGCGGCGGAAGCCCCAC-CGATGGCTCCATCCCTGCTCCTCCTCCCA 693 ** * ** * **** * * ** * ** **** ** * * consensus_2845#0 AAGACAAACAGCTTGATCACGCGGCTTAAATTCGGGACCATACTTATCATGGTTATGAAA 834 consensus_2845#1 AAGAATAGCTACCGGACCTCGGAGTGGAGAT--GGCGCTGTCGCCGTTCTTGCCTCGCGA 751 **** * * * ** * ** * * ** ** * * * * * * * consensus_2845#0 GACATCAAGAA-GAACTATGTACTCCTGGACATTATTAGAATGCCGGTTTTCTTCCTCTA 893 consensus_2845#1 CCCGGGAGCAGTGGACATTGGCCTCGGGGTTTTTTCTTTCTCGCTGTGCTCACTTCCCCA 811 * * * * ** ** *** ** ** * ** * * * * * * consensus_2845#0 CATTTGTGCGTTCGTATTCGATGTTGCTGGTATGAAGAAGTATGCCAGGCGCTCACTTAT 953 consensus_2845#1 C-----CGCATCGACGCTCC---TCGCCGACGACCAGTGGTAGGTGAAGTTTCTTTTGGA 863 * ** * ** * ** * ** *** * * * * consensus_2845#0 TTCATTGTTTAATCTGCTGAAATCTAGAGGTGGCATACAAGAAATATATAGGATTATGTG 1013 consensus_2845#1 TTTCTCTTACGAT--GCAGAAATGCTGAGTTGCTGCATGTGCAGTGAGTCCGG--AAGCG 919 ** * * ** ** ***** *** ** * * * * * * * * * consensus_2845#0 GTATCCTGGTTATATATCTCCATATGATGATTCTGCTGACTGGTGATGCATTTGTGTGAG 1073 consensus_2845#1 GCGAATGTGTGAAATTTTTTT------TGAATCTGATTTCTGTGAATTTAATTCTG-AAA 972 * ** * ** * * *** **** * *** ** * ** ** * consensus_2845#0 TGGTTCCCACTTAGGAGCTTGTTCTAGGAAGGATGGAGCTTGTTCTAGGAAGGATGCCCT 1133 consensus_2845#1 TGATTT------------------------------------------------------ 978 ** ** consensus_2845#0 CCCCTTCACAAAGTTTTGTAAAGTATAATAACGAATAAATAGCTATGAACGTATGGTGAG 1193 consensus_2845#1 ------------------------------------------------------------ consensus_2845#0 TCTCTACAAAAGAAACATTC 1213 consensus_2845#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||