These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2894#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1677 fasta sequence [CCTTCTCCGCGCCGCCCGCTCGATCGATCGCCATGGAGGAGAAGGGGATGGGGAAGCAGCGGTGGGAGAAGGTGCTCCTCCAGGCCGCCTTCGACGGCAACCTTCGCCTCCTCAGGAAGATGGCGCGCGGGCTGGTCACGACGGGGCGCGGCCGCGGCGAGGCGGACGTCCTGGCGGCCGTGGCGGACGGCGGCAGCGGGAGCCGCGCGCTGCACCTGGCGGCCACCGAGGGGAGGATGGACGTCCTCACGTACCTCGTCGAGGACCTCCGCCTCGACGTCAACCAAACCAACGACAGAGGTGAAACTCCACTATTCCTTTCTGCGTTTTTTGGGAGAACTGCATCTACAAGATATCTGCTTGATCATGGTGCTGATCCAATGATTGTTGGTAAATCAGGATCACCTCTTCATGCGGCTGCCGGGAAAGGACACTGTGAAATAGTAGAATTGCTGCTGTCAAGAGGGATTGGTATTGTTTTTGATTCTCTCTATGGGACCCCGTTGCATACGGCTGCTGCTCATGGTCAATGTAGCACCATGAAGATATTATTGGACCATCATGCAGATCCTGATAAGGTTTTCAATCTTGATGATGCCCCATTGAATATGGCTATATCTTCTAAATCATTGGAATGCGTCAAACTGCTCATCCAAGCTGGGGCTGATGTGAACTTTAGAGACTCCAATGGTGCTACTTATGTTATGATGGCAGCAAATTATGGTTTTTCTGGCATCATGAAATGCCTATTAGATGCTGGTGCTAATCCTAATATTCCGGACCAATTTGGTGTTTTTCCAATTGAAGTTGCTGCTCTCCAAGTCCATAGGGAAATTGTTGAGATGTTATTTCCTTTGACTTCACCAATTTCAACGGTGCCAGATTGGAGTATTGATGGAATCTTTGCCCATGCAAAAAACTTTGGTTCGAAGCCATTGCCTGAAGATCTTTGTGTAAAGAAAATAGCTCAAATGAAAGTAGAAGGTAAAGAGGCTTTCAAGAGAAAGGATTATTTACTTGCGGCACAACTCTATACAAGTGCACTGGGACTTGGACCTAGTCCTGATGATTCTGCAACTCTGCTGGCAAATAGGAGTCTCTGCTGGTTGCGCTTGGAAAATGGAAAACAAGCTCTTGCTGATGCTAATATGTGCAGAATGTTCCGGCCTCATTGGATAAAAGCCTGCTATCGGCAAGGAGCAGCTTTCATGCTTCTTAAGGAATATGGTAATGCTTGTGATGCCTTTTCAGATGGCTTGAAGCTGGACCCAGCAAATGTTGATATTGAGAATGCTCTAAGGGCAGCGCTTCAGGCCGTGAAGAATGACCGGTGCGTTAAGAATAATCAGTGACTTGGCTTATATTGTCAGTAGAAGTTGAGCTTCTGCTCTGTTGCTAGTTCCAGTACATCTTTTTGCCACGAAAACTCTTGTGCTTTTGTGAACTAAAGTTGGCACGGAAACTGGAGTGTTATTTACCCATTTTAATATTTTTTACGCCTATCCACTTGTAGCTTAGTTTGTAAGTGTGGCAGCTTAGTTGGGGTGGTAGTCATTGTTCTTCCTGCCTGCTTAAATAGCTCTGCGTGACATGCCCACATCATCTGATGGATTTGTGGCCGTCCTTGCTGTAAATTGGACATGCAAATCCTGTTTATAAGGGGCTCTAACTCACTGA] [+] EMBL AK068333 [CCTTCTCCGCGCCGCCCGCTCGATCGATCGCCATGGAGGAGAAGGGGATGGGGAAGCAGCGGTGGGAGAAGGTGCTCCTCCAGGCCGCCTTCGACGGCAACCTTCGCCTCCTCAGGAAGATGGCGCGCGGGCTGGTCACGACGGGGCGCGGCCGCGGCGAGGCGGACGTCCTGGCGGCCGTGGCGGACGGCGGCAGCGGGAGCCGCGCGCTGCACCTGGCGGCCACCGAGGGGAGGATGGACGTCCTCACGTACCTCGTCGAGGACCTCCGCCTCGACGTCAACCAAACCAACGACAGAGGTGAAACTCCACTATTCCTTTCTGCGTTTTTTGGGAGAACTGCATCTACAAGATATCTGCTTGATCATGGTGCTGATCCAATGATTGTTGGTAAATCAGGATCACCTCTTCATGCGGCTGCCGGGAAAGGACACTGTGAAATAGTAGAATTGCTGCTGTCAAGAGGGATTGGTATTGTTTTTGATTCTCTCTATGGGACCCCGTTGCATACGGCTGCTGCTCATGGTCAATGTAGCACCATGAAGATATTATTGGACCATCATGCAGATCCTGATAAGGTTTTCAATCTTGATGATGCCCCATTGAATATGGCTATATCTTCTAAATCATTGGAATGCGTCAAACTGCTCATCCAAGCTGGGGCTGATGTGAACTTTAGAGACTCCAATGGTGCTACTTATGTTATGATGGCAGCAAATTATGGTTTTTCTGGCATCATGAAATGCCTATTAGATGCTGGTGCTAATCCTAATATTCCGGACCAATTTGGTGTTTTTCCAATTGAAGTTGCTGCTCTCCAAGTCCATAGGGAAATTGTTGAGATGTTATTTCCTTTGACTTCACCAATTTCAACGGTGCCAGATTGGAGTATTGATGGAATCTTTGCCCATGCAAAAAACTTTGGTTCGAAGCCATTGCCTGAAGATCTTTGTGTAAAGAAAATAGCTCAAATGAAAGTAGAAGGTAAAGAGGCTTTCAAGAGAAAGGATTATTTACTTGCGGCACAACTCTATACAAGTGCACTGGGACTTGGACCTAGTCCTGATGATTCTGCAACTCTGCTGGCAAATAGGAGTCTCTGCTGGTTGCGCTTGGAAAATGGAAAACAAGCTCTTGCTGATGCTAATATGTGCAGAATGTTCCGGCCTCATTGGATAAAAGCCTGCTATCGGCAAGGAGCAGCTTTCATGCTTCTTAAGGAATATGGTAATGCTTGTGATGCCTTTTCAGATGGCTTGAAGCTGGACCCAGCAAATGTTGATATTGAGAATGCTCTAAGGGCAGCGCTTCAGGCCGTGAAGAATGACCGGTGCGTTAAGAATAATCAGTGACTTGGCTTATATTGTCAGTAGAAGTTGAGCTTCTGCTCTGTTGCTAGTTCCAGTACATCTTTTTGCCACGAAAACTCTTGTGCTTTTGTGAACTAAAGTTGGCACGGAAACTGGAGTGTTATTTACCCATTTTAATATTTTTTACGCCTATCCACTTGTAGCTTAGTTTGTAAGTGTGGCAGCTTAGTTGGGGTGGTAGTCATTGTTCTTCCTGCCTGCTTAAATAGCTCTGCGTGACATGCCCACATCATCTGATGGATTTGTGGCCGTCCTTGCTGTAAATTGGACATGCAAATCCTGTTTATAAGGGGCTCTAACTCACTGA] consensusID : consensus_2894#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 803 fasta sequence [ATACTTCTAATTTGGTTCAAATTCTTTGCAATTATATTTGGCATTTGTACTAGTCATGATATATTATGAAAGAACTTTTTTTTTCATCTTGCAGTTTGGTGTTTTTCCAATTGAAGTTGCTGCTCTCCAAGTCCATAGGGAAATTGTTGAGATGTTATTTCCTTTGACTTCACCAATTTCAACGGTGCTAGATTGGAGTATTGATGGAATCTTTGCCCATGCAAAAAACTTTGGTTCGAAGCCATTGCCTGAAGATCTTTGTGTAAAGAAAATAGCTCAAATGAAAGTAGAAGGTAAAGAGGCTTTCAAGAGAAAGGATTATTTACTTGCGGCACAACTCTATACAAGTGCACTGGGACTTGGACCTAGTCCTGATGATTCTGCAACTCTGCTGGCAAATAGGAGTCTCTGCTGGTTGCGCTTGGAAAATGGAAAACAAGCTCTTGCTGATGCTAATATGTGCAGAATGTTCCGGCCTCATTGGATAAAAGCCTGCTGTCGGCAAGGAGCAGCTTTCATGCTTCTTAAGGAATATGGTAATGCTTGTGATGCCTTTTCAGATGGCTTGAAGCTGGACCCAGCAAATGNTGATATTGAGAATGCTCTAAGGCAGCGCTTCAGGCCGTGAAGAATGAGCGGTGCGNTAAGAATAATCAGTGACTTGGCTTATATTGTCAGTAGAAGTTGAGCTTCTGCTCTGGTGCTAGNTNCAGNACATCTTTTTTGNCACGAAAACTCTTGNGCTTTTGNGAACTAAAGNTGGCACGGAAACTGGAGNGGTATTTANCCATTTTAATATTTTT] [+] EMBL CA764424 [ATACTTCTAATTTGGTTCAAATTCTTTGCAATTATATTTGGCATTTGTACTAGTCATGATATATTATGAAAGAACTTTTTTTTTCATCTTGCAGTTTGGTGTTTTTCCAATTGAAGTTGCTGCTCTCCAAGTCCATAGGGAAATTGTTGAGATGTTATTTCCTTTGACTTCACCAATTTCAACGGTGCTAGATTGGAGTATTGATGGAATCTTTGCCCATGCAAAAAACTTTGGTTCGAAGCCATTGCCTGAAGATCTTTGTGTAAAGAAAATAGCTCAAATGAAAGTAGAAGGTAAAGAGGCTTTCAAGAGAAAGGATTATTTACTTGCGGCACAACTCTATACAAGTGCACTGGGACTTGGACCTAGTCCTGATGATTCTGCAACTCTGCTGGCAAATAGGAGTCTCTGCTGGTTGCGCTTGGAAAATGGAAAACAAGCTCTTGCTGATGCTAATATGTGCAGAATGTTCCGGCCTCATTGGATAAAAGCCTGCTGTCGGCAAGGAGCAGCTTTCATGCTTCTTAAGGAATATGGTAATGCTTGTGATGCCTTTTCAGATGGCTTGAAGCTGGACCCAGCAAATGNTGATATTGAGAATGCTCTAAGGCAGCGCTTCAGGCCGTGAAGAATGAGCGGTGCGNTAAGAATAATCAGTGACTTGGCTTATATTGTCAGTAGAAGTTGAGCTTCTGCTCTGGTGCTAGNTNCAGNACATCTTTTTTGNCACGAAAACTCTTGNGCTTTTGNGAACTAAAGNTGGCACGGAAACTGGAGNGGTATTTANCCATTTTAATATTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2894#0 CCTTCTCCGCGCCGCCCGCTCGATCGATCGCCATGGAGGAGAAGGGGATGGGGAAGCAGC 60 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 GGTGGGAGAAGGTGCTCCTCCAGGCCGCCTTCGACGGCAACCTTCGCCTCCTCAGGAAGA 120 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 TGGCGCGCGGGCTGGTCACGACGGGGCGCGGCCGCGGCGAGGCGGACGTCCTGGCGGCCG 180 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 TGGCGGACGGCGGCAGCGGGAGCCGCGCGCTGCACCTGGCGGCCACCGAGGGGAGGATGG 240 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 ACGTCCTCACGTACCTCGTCGAGGACCTCCGCCTCGACGTCAACCAAACCAACGACAGAG 300 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 GTGAAACTCCACTATTCCTTTCTGCGTTTTTTGGGAGAACTGCATCTACAAGATATCTGC 360 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 TTGATCATGGTGCTGATCCAATGATTGTTGGTAAATCAGGATCACCTCTTCATGCGGCTG 420 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 CCGGGAAAGGACACTGTGAAATAGTAGAATTGCTGCTGTCAAGAGGGATTGGTATTGTTT 480 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 TTGATTCTCTCTATGGGACCCCGTTGCATACGGCTGCTGCTCATGGTCAATGTAGCACCA 540 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 TGAAGATATTATTGGACCATCATGCAGATCCTGATAAGGTTTTCAATCTTGATGATGCCC 600 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 CATTGAATATGGCTATATCTTCTAAATCATTGGAATGCGTCAAACTGCTCATCCAAGCTG 660 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 GGGCTGATGTGAACTTTAGAGACTCCAATGGTGCTACTTATGTTATGATGGCAGCAAATT 720 consensus_2894#1 ---------------------------------ATACTTCTAATTTGGTTCAAATTCTTT 27 ***** * * ** * * ** consensus_2894#0 ATGGTTTT-TCTGGCATCATGAAATGCCTATTAGATGCTGGTGCTAATCCTAATATTCCG 779 consensus_2894#1 GCAATTATATTTGGCATT-TGTACTAGTCATGATATATTATGAAAGAACTTTTTTTTTCA 86 ** * * ****** ** * * ** * ** * * * * * ** * consensus_2894#0 GAC--CAATTTGGTGTTTTTCCAATTGAAGTTGCTGCTCTCCAAGTCCATAGGGAAATTG 837 consensus_2894#1 TCTTGCAGTTTGGTGTTTTTCCAATTGAAGTTGCTGCTCTCCAAGTCCATAGGGAAATTG 146 ** **************************************************** consensus_2894#0 TTGAGATGTTATTTCCTTTGACTTCACCAATTTCAACGGTGCCAGATTGGAGTATTGATG 897 consensus_2894#1 TTGAGATGTTATTTCCTTTGACTTCACCAATTTCAACGGTGCTAGATTGGAGTATTGATG 206 ****************************************** ***************** consensus_2894#0 GAATCTTTGCCCATGCAAAAAACTTTGGTTCGAAGCCATTGCCTGAAGATCTTTGTGTAA 957 consensus_2894#1 GAATCTTTGCCCATGCAAAAAACTTTGGTTCGAAGCCATTGCCTGAAGATCTTTGTGTAA 266 ************************************************************ consensus_2894#0 AGAAAATAGCTCAAATGAAAGTAGAAGGTAAAGAGGCTTTCAAGAGAAAGGATTATTTAC 1017 consensus_2894#1 AGAAAATAGCTCAAATGAAAGTAGAAGGTAAAGAGGCTTTCAAGAGAAAGGATTATTTAC 326 ************************************************************ consensus_2894#0 TTGCGGCACAACTCTATACAAGTGCACTGGGACTTGGACCTAGTCCTGATGATTCTGCAA 1077 consensus_2894#1 TTGCGGCACAACTCTATACAAGTGCACTGGGACTTGGACCTAGTCCTGATGATTCTGCAA 386 ************************************************************ consensus_2894#0 CTCTGCTGGCAAATAGGAGTCTCTGCTGGTTGCGCTTGGAAAATGGAAAACAAGCTCTTG 1137 consensus_2894#1 CTCTGCTGGCAAATAGGAGTCTCTGCTGGTTGCGCTTGGAAAATGGAAAACAAGCTCTTG 446 ************************************************************ consensus_2894#0 CTGATGCTAATATGTGCAGAATGTTCCGGCCTCATTGGATAAAAGCCTGCTATCGGCAAG 1197 consensus_2894#1 CTGATGCTAATATGTGCAGAATGTTCCGGCCTCATTGGATAAAAGCCTGCTGTCGGCAAG 506 *************************************************** ******** consensus_2894#0 GAGCAGCTTTCATGCTTCTTAAGGAATATGGTAATGCTTGTGATGCCTTTTCAGATGGCT 1257 consensus_2894#1 GAGCAGCTTTCATGCTTCTTAAGGAATATGGTAATGCTTGTGATGCCTTTTCAGATGGCT 566 ************************************************************ consensus_2894#0 TGAAGCTGGACCCAGCAAATGTTGATATTGAGAATGCTCTAAGGGCAGCGCTTCAGGCCG 1317 consensus_2894#1 TGAAGCTGGACCCAGCAAATGNTGATATTGAGAATGCTCTAAGG-CAGCGCTTCAGGCCG 625 ********************* ********************** *************** consensus_2894#0 TGAAGAATGACCGGTGCGTTAAGAATAATCAGTGACTTGGCTTATATTGTCAGTAGAAGT 1377 consensus_2894#1 TGAAGAATGAGCGGTGCGNTAAGAATAATCAGTGACTTGGCTTATATTGTCAGTAGAAGT 685 ********** ******* ***************************************** consensus_2894#0 TGAGCTTCTGCTCTGTTGCTAGTTCCAGTACATCTTTTT-GCCACGAAAACTCTTGTGCT 1436 consensus_2894#1 TGAGCTTCTGCTCTGGTGCTAGNTNCAGNACATCTTTTTTGNCACGAAAACTCTTGNGCT 745 *************** ****** * *** ********** * ************** *** consensus_2894#0 TTTGTGAACTAAAGTTGGCACGGAAACTGGAGTGTTATTTACCCATTTTAATATTTTTTA 1496 consensus_2894#1 TTTGNGAACTAAAGNTGGCACGGAAACTGGAGNGGTATTTANCCATTTTAATATTTTT-- 803 **** ********* ***************** * ****** **************** consensus_2894#0 CGCCTATCCACTTGTAGCTTAGTTTGTAAGTGTGGCAGCTTAGTTGGGGTGGTAGTCATT 1556 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 GTTCTTCCTGCCTGCTTAAATAGCTCTGCGTGACATGCCCACATCATCTGATGGATTTGT 1616 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 GGCCGTCCTTGCTGTAAATTGGACATGCAAATCCTGTTTATAAGGGGCTCTAACTCACTG 1676 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 A 1677 consensus_2894#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||