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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 851 fasta sequence
[CTACTACACTCTGTCCCGTGCACGTTAATAAAGAAGCAAACTATAAATATGTGCGACGACGAAGTAGCTGCCCTTGTCGTGGACAATGGATCCGGAATGTGCAAAGCTGGTTTCGCTGGAGATGATGCACCTCGAGCTGTATTCCCCTCAATTGTCGGTCGACCCAGGCATCAGGGAGTAATGGTGGGTATGGGTCAAAAAGATAGCTACGTCGGGGATGAAGCTCAGAGCAAGAGAGGTATTTTGACTCTAAAATATCCAATCGAGCACGGTATCATCACAAATTGGGATGATATGGAGAAAATTTGGCATCATACTTTTTACAACGAATTACGTGTAGCACCTGAGGAACATCCTGTTTTATTGACTGAAGCTCCACTGAACCCAAAAGCTAATCGTGAAAAAATGACTCAAATTATGTTTGAAACTTTCAATAGCCCAGCTATGTATGTAGCTATTCAAGCTGTCTTGTCACTCTATGCTTCCGGACGTACTACTGGTATCGTTCTAGACTCAGGTGATGGCGTTTCTCACACTGTACCAATCTACGAAGGGTATGCTTTACCCCACGCAATCCTTCGTCTAGATTTAGCTGGTCGCGACCTTAACTGATTATCTCATGAAAAATTTTGACTGAGAGAGGCTACTCTTTCACAACTACAGCTGAAAGAGAAATCGGGAGAGACATCAAAGAAAAACTTTGCTACGTCGCTCTTGATTTCGAACAANAATGGCTACCGCAGCTGCAAGTACATCTCTAGAGAAAAGGTATGAATACCTGANGGGCAAGNATCACTATGGGAATGAACGATTCCGCTGNCCANAANCTNTTTTCAACATTATTCCTGGGT]
[+] EMBL CA764435 [CTACTACACTCTGTCCCGTGCACGTTAATAAAGAAGCAAACTATAAATATGTGCGACGACGAAGTAGCTGCCCTTGTCGTGGACAATGGATCCGGAATGTGCAAAGCTGGTTTCGCTGGAGATGATGCACCTCGAGCTGTATTCCCCTCAATTGTCGGTCGACCCAGGCATCAGGGAGTAATGGTGGGTATGGGTCAAAAAGATAGCTACGTCGGGGATGAAGCTCAGAGCAAGAGAGGTATTTTGACTCTAAAATATCCAATCGAGCACGGTATCATCACAAATTGGGATGATATGGAGAAAATTTGGCATCATACTTTTTACAACGAATTACGTGTAGCACCTGAGGAACATCCTGTTTTATTGACTGAAGCTCCACTGAACCCAAAAGCTAATCGTGAAAAAATGACTCAAATTATGTTTGAAACTTTCAATAGCCCAGCTATGTATGTAGCTATTCAAGCTGTCTTGTCACTCTATGCTTCCGGACGTACTACTGGTATCGTTCTAGACTCAGGTGATGGCGTTTCTCACACTGTACCAATCTACGAAGGGTATGCTTTACCCCACGCAATCCTTCGTCTAGATTTAGCTGGTCGCGACCTTAACTGATTATCTCATGAAAAATTTTGACTGAGAGAGGCTACTCTTTCACAACTACAGCTGAAAGAGAAATCGGGAGAGACATCAAAGAAAAACTTTGCTACGTCGCTCTTGATTTCGAACAANAATGGCTACCGCAGCTGCAAGTACATCTCTAGAGAAAAGGTATGAATACCTGANGGGCAAGNATCACTATGGGAATGAACGATTCCGCTGNCCANAANCTNTTTTCAACATTATTCCTGGGT]
consensusID : consensus_2897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence
[NGTAGGACGAGACAAGGGGGACAGACGCTACTACACTACTGTCCCGTGCACGTTAATAAAGAAGCAAACTATAAATATGTGCGACGACGAAGTAGCTGCCCTTGTCGTGGACAATGGATCCGGAATGTGCAAAGCTGGTTTCGCTGGAGATGATGCACCTCGAGCTGTATTCCCCTCAATTGTCGGTCCGACCNAGGCATCAGGGAGTAATGGTGGGTATGGGTCAAAAAGATAGCTACGTCCGGAGATGAAGCTCAAGANCAAGGAGAGAGTATTTTCGNCNNCTAAAAATATCCCCATTCGAGCACCGGNCCTCATTCAACAAATTNGGCGNTNGATTATGNATNAAAANNTCCCGGNCATGCA]
[+] EMBL CB096403 [NGTAGGACGAGACAAGGGGGACAGACGCTACTACACTACTGTCCCGTGCACGTTAATAAAGAAGCAAACTATAAATATGTGCGACGACGAAGTAGCTGCCCTTGTCGTGGACAATGGATCCGGAATGTGCAAAGCTGGTTTCGCTGGAGATGATGCACCTCGAGCTGTATTCCCCTCAATTGTCGGTCCGACCNAGGCATCAGGGAGTAATGGTGGGTATGGGTCAAAAAGATAGCTACGTCCGGAGATGAAGCTCAAGANCAAGGAGAGAGTATTTTCGNCNNCTAAAAATATCCCCATTCGAGCACCGGNCCTCATTCAACAAATTNGGCGNTNGATTATGNATNAAAANNTCCCGGNCATGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2897#0 ---------------------------CTACTACACT-CTGTCCCGTGCACGTTAATAAA 32
consensus_2897#1 NGTAGGACGAGACAAGGGGGACAGACGCTACTACACTACTGTCCCGTGCACGTTAATAAA 60
********** **********************
consensus_2897#0 GAAGCAAACTATAAATATGTGCGACGACGAAGTAGCTGCCCTTGTCGTGGACAATGGATC 92
consensus_2897#1 GAAGCAAACTATAAATATGTGCGACGACGAAGTAGCTGCCCTTGTCGTGGACAATGGATC 120
************************************************************
consensus_2897#0 CGGAATGTGCAAAGCTGGTTTCGCTGGAGATGATGCACCTCGAGCTGTATTCCCCTCAAT 152
consensus_2897#1 CGGAATGTGCAAAGCTGGTTTCGCTGGAGATGATGCACCTCGAGCTGTATTCCCCTCAAT 180
************************************************************
consensus_2897#0 TGTCGGTC-GACCCAGGCATCAGGGAGTAATGGTGGGTATGGGTCAAAAAGATAGCTACG 211
consensus_2897#1 TGTCGGTCCGACCNAGGCATCAGGGAGTAATGGTGGGTATGGGTCAAAAAGATAGCTACG 240
******** **** **********************************************
consensus_2897#0 TC-GGGGATGAAGCTCAGAGCAAGAGAGGTATTTTGACTCTAAAATATCCAATCGAGCAC 270
consensus_2897#1 TCCGGAGATGAAGCTCAAGANCAAGGAGAGAGT---ATTTTCG-----NCNNCTAAAAAT 292
** ** *********** * *** * * * * * * * *
consensus_2897#0 GGTATCATCACAAATTGGGATGATATGGAGAAAATTTGGCATCATACTTTTTACAACGAA 330
consensus_2897#1 ATCCCCATTCGAGCACCGGNCCTCATTCAACAAATTNGGCGNTNGATTATGNATNAAAAN 352
*** * ** ** * ***** *** * * * * * *
consensus_2897#0 TTACGTGTAGCACCTGAGGAACATCCTGTTTTATTGACTGAAGCTCCACTGAACCCAAAA 390
consensus_2897#1 NTCCCGGNCATGCA---------------------------------------------- 366
* * * *
consensus_2897#0 GCTAATCGTGAAAAAATGACTCAAATTATGTTTGAAACTTTCAATAGCCCAGCTATGTAT 450
consensus_2897#1 ------------------------------------------------------------
consensus_2897#0 GTAGCTATTCAAGCTGTCTTGTCACTCTATGCTTCCGGACGTACTACTGGTATCGTTCTA 510
consensus_2897#1 ------------------------------------------------------------
consensus_2897#0 GACTCAGGTGATGGCGTTTCTCACACTGTACCAATCTACGAAGGGTATGCTTTACCCCAC 570
consensus_2897#1 ------------------------------------------------------------
consensus_2897#0 GCAATCCTTCGTCTAGATTTAGCTGGTCGCGACCTTAACTGATTATCTCATGAAAAATTT 630
consensus_2897#1 ------------------------------------------------------------
consensus_2897#0 TGACTGAGAGAGGCTACTCTTTCACAACTACAGCTGAAAGAGAAATCGGGAGAGACATCA 690
consensus_2897#1 ------------------------------------------------------------
consensus_2897#0 AAGAAAAACTTTGCTACGTCGCTCTTGATTTCGAACAANAATGGCTACCGCAGCTGCAAG 750
consensus_2897#1 ------------------------------------------------------------
consensus_2897#0 TACATCTCTAGAGAAAAGGTATGAATACCTGANGGGCAAGNATCACTATGGGAATGAACG 810
consensus_2897#1 ------------------------------------------------------------
consensus_2897#0 ATTCCGCTGNCCANAANCTNTTTTCAACATTATTCCTGGGT 851
consensus_2897#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||