These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1838 fasta sequence [CCTCCCCCCACCATCGGACAGCGAGATGGTCATGGAGATCCCGAGCTCGAAGCGCGACATGGCGCGGGGAGCGGAGGACGACGGCGAGGAGGAGGAGGAGGAGGAGTACGACCGCGTGTTCTACGAGGACATCGAGGCGCCCAAGTTCGTCGACCTCACCGCCCCCGACGCCGCCCGCCCCTCCGACGACCCCTCCTGGTTCTGCCTCCGCATCGGTTGTGACCAGAACCACGAGCATGTCGACCCGGAGGCGCTGCACAGGAGCTTCTTCATGCGGGTCATGGCAGCGAGGAGCCCCAACGTGCGGCTGCAGAAGGCGATCAGGAGGAGGAACCAGAGCTCGATGCTGAAATGCCCGCACTCCGCGCCGCCGAAGCCTCCAAGGTCACGGATCGCGAGGCTAAGCACGGCGACGGAGGCCGCGGCGAAGCCCAGGCTGAAGACCCACCGGATTTGCACCCTGCGGGCGTCTCCGACCCGGACCAAGGCGGCGAAGGTGGAGGCCTCCGGCGCGAGGAAGAAAGCCCTGACGACGCCGAGGAGCAAGCCCGTCCGGCCGAGGCAGGATCCGTTCCTCAGCGTGAAGCACCAGAAGCAGGAGCCCGTCGCGGCGGCGGCGAGGAAGGGGACCGTCGCGAAAGCTCTGTTCATGGCCACGCCGAAGAAGGACGCCAGCAAGACGCCGGCGAAGGCCCAGGCGGCGCCGCCGCTGTCCGAGGTCTGCTCCAAGATGAGGAAGCTGAATTTGGCGTGCCGGGAGGTGCCTAGCAGATACCTCTGTCAGTCATCGAATCCGAAGAGTTCCAAGAAATGCGACCAGACTGCAGTGAAGAGTGTCAAGGCAGCTCAAAATTCCAGGCCGGATGAGAGGAAGAAGAAGAAGATTCTAGGCTGCTCGTTGCAACATGCCAGTTCTGAAGCTGGTAGAGAGAACAGAAATGGCCGTGAGAACACAGCTGCAGATGAGAATGCTTGTCCAGAAGCTGCGAGCTCCAGCGAGGAACCGAAGGAGGTGATGCAGGAATCCAGAATTGAGGTGGAGACATCACAAGCTGACAATTGTGATGACGATAAGGAGAATTTGTCATATGTTGATCAGCCAACCGAACAAATGGTGATCATCTCGCATTCTGATGGTGAAAACCTGCAGCAGCTGGAGAACAATGAGAATGTCCCTCGGAAGGTAGCCAAAATGCAGAGCAAACTGAACGCAGAGCAAGGAGGAAAGCTCAAGAAAACTACCAATCCGAAGCCATTTCGGCTAAGGACTGATGAAAGAGGAGTGTTGAGAGAAGCAAATCCAGAAAGACACCAGACGCTCACCGAGAACAACTCCACGGCCGCAGTTCAGCAAATAGGAAGGTGTCGTGACGGAAAGGGACGAGACAAACCGACGTGCGGCGAGAAACAGAAGAAGCAAATCAGAAATGTTGCAACGGGTCAGGTTGATGAAGCCAAAAGGGTCTTGAACAGCATTCGTTGCAACAAGGTGAAGCCTGCGATGACGAATGGAAAAACAGTTGGGAAATCACAGGGAGCTTCCAGAGTAGCATCATCAACAAGAAGTACCAAGATAACAAGTGGCTCCATGGCACCTTCTAAGGTTGGAAAAGAGAAGAGTACATCGGTGAAACTATCCAGGCTACAAGCAGCTGCTGCTTAACTGAAGTGACAAATGTTTTATTGTCAGCTCCAAGCATGAAAATATGTATTTACCGCGTCGAATTCGTTCCATTGTATTCTTGAACTACTCTCTAGTCTGCACACTCACTCACACCAACAAGGATGTATCATGTTCCCTTGTTTTGTCCGTGCCATTGGTATGTTGAGTGAAATTT] [+] EMBL AK106660 [CCTCCCCCCACCATCGGACAGCGAGATGGTCATGGAGATCCCGAGCTCGAAGCGCGACATGGCGCGGGGAGCGGAGGACGACGGCGAGGAGGAGGAGGAGGAGGAGTACGACCGCGTGTTCTACGAGGACATCGAGGCGCCCAAGTTCGTCGACCTCACCGCCCCCGACGCCGCCCGCCCCTCCGACGACCCCTCCTGGTTCTGCCTCCGCATCGGTTGTGACCAGAACCACGAGCATGTCGACCCGGAGGCGCTGCACAGGAGCTTCTTCATGCGGGTCATGGCAGCGAGGAGCCCCAACGTGCGGCTGCAGAAGGCGATCAGGAGGAGGAACCAGAGCTCGATGCTGAAATGCCCGCACTCCGCGCCGCCGAAGCCTCCAAGGTCACGGATCGCGAGGCTAAGCACGGCGACGGAGGCCGCGGCGAAGCCCAGGCTGAAGACCCACCGGATTTGCACCCTGCGGGCGTCTCCGACCCGGACCAAGGCGGCGAAGGTGGAGGCCTCCGGCGCGAGGAAGAAAGCCCTGACGACGCCGAGGAGCAAGCCCGTCCGGCCGAGGCAGGATCCGTTCCTCAGCGTGAAGCACCAGAAGCAGGAGCCCGTCGCGGCGGCGGCGAGGAAGGGGACCGTCGCGAAAGCTCTGTTCATGGCCACGCCGAAGAAGGACGCCAGCAAGACGCCGGCGAAGGCCCAGGCGGCGCCGCCGCTGTCCGAGGTCTGCTCCAAGATGAGGAAGCTGAATTTGGCGTGCCGGGAGGTGCCTAGCAGATACCTCTGTCAGTCATCGAATCCGAAGAGTTCCAAGAAATGCGACCAGACTGCAGTGAAGAGTGTCAAGGCAGCTCAAAATTCCAGGCCGGATGAGAGGAAGAAGAAGAAGATTCTAGGCTGCTCGTTGCAACATGCCAGTTCTGAAGCTGGTAGAGAGAACAGAAATGGCCGTGAGAACACAGCTGCAGATGAGAATGCTTGTCCAGAAGCTGCGAGCTCCAGCGAGGAACCGAAGGAGGTGATGCAGGAATCCAGAATTGAGGTGGAGACATCACAAGCTGACAATTGTGATGACGATAAGGAGAATTTGTCATATGTTGATCAGCCAACCGAACAAATGGTGATCATCTCGCATTCTGATGGTGAAAACCTGCAGCAGCTGGAGAACAATGAGAATGTCCCTCGGAAGGTAGCCAAAATGCAGAGCAAACTGAACGCAGAGCAAGGAGGAAAGCTCAAGAAAACTACCAATCCGAAGCCATTTCGGCTAAGGACTGATGAAAGAGGAGTGTTGAGAGAAGCAAATCCAGAAAGACACCAGACGCTCACCGAGAACAACTCCACGGCCGCAGTTCAGCAAATAGGAAGGTGTCGTGACGGAAAGGGACGAGACAAACCGACGTGCGGCGAGAAACAGAAGAAGCAAATCAGAAATGTTGCAACGGGTCAGGTTGATGAAGCCAAAAGGGTCTTGAACAGCATTCGTTGCAACAAGGTGAAGCCTGCGATGACGAATGGAAAAACAGTTGGGAAATCACAGGGAGCTTCCAGAGTAGCATCATCAACAAGAAGTACCAAGATAACAAGTGGCTCCATGGCACCTTCTAAGGTTGGAAAAGAGAAGAGTACATCGGTGAAACTATCCAGGCTACAAGCAGCTGCTGCTTAACTGAAGTGACAAATGTTTTATTGTCAGCTCCAAGCATGAAAATATGTATTTACCGCGTCGAATTCGTTCCATTGTATTCTTGAACTACTCTCTAGTCTGCACACTCACTCACACCAACAAGGATGTATCATGTTCCCTTGTTTTGTCCGTGCCATTGGTATGTTGAGTGAAATTT] consensusID : consensus_2915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [GAGTAGCATCATCAACAAGAAGTACCAAGATAACAAGTGGCTCCATGGCACCTTCTAAGGTTGGAAAAGAGAAGAGTACATCGGTGAAACTATCCAGGCTACAAGCAGCTGCTGCTTAACTGAAGTGACAAATGTTTTATTGTCAGCTCCAAGCATGAAAATATGTATTTACCGCGTCGAATTCGTTCCATTGTATTCTTGAACTACTCTCTAGTCTGCACACTCACTCACACCAACAAGGATGTATCATGTTCCCTTGTTTTGTCAAAAAAAAAAAAAAA] [+] EMBL AU069243 [GAGTAGCATCATCAACAAGAAGTACCAAGATAACAAGTGGCTCCATGGCACCTTCTAAGGTTGGAAAAGAGAAGAGTACATCGGTGAAACTATCCAGGCTACAAGCAGCTGCTGCTTAACTGAAGTGACAAATGTTTTATTGTCAGCTCCAAGCATGAAAATATGTATTTACCGCGTCGAATTCGTTCCATTGTATTCTTGAACTACTCTCTAGTCTGCACACTCACTCACACCAACAAGGATGTATCATGTTCCCTTGTTTTGTCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2915#0 CCTCCCCCCACCATCGGACAGCGAGATGGTCATGGAGATCCCGAGCTCGAAGCGCGACAT 60 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 GGCGCGGGGAGCGGAGGACGACGGCGAGGAGGAGGAGGAGGAGGAGTACGACCGCGTGTT 120 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 CTACGAGGACATCGAGGCGCCCAAGTTCGTCGACCTCACCGCCCCCGACGCCGCCCGCCC 180 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 CTCCGACGACCCCTCCTGGTTCTGCCTCCGCATCGGTTGTGACCAGAACCACGAGCATGT 240 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 CGACCCGGAGGCGCTGCACAGGAGCTTCTTCATGCGGGTCATGGCAGCGAGGAGCCCCAA 300 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 CGTGCGGCTGCAGAAGGCGATCAGGAGGAGGAACCAGAGCTCGATGCTGAAATGCCCGCA 360 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 CTCCGCGCCGCCGAAGCCTCCAAGGTCACGGATCGCGAGGCTAAGCACGGCGACGGAGGC 420 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 CGCGGCGAAGCCCAGGCTGAAGACCCACCGGATTTGCACCCTGCGGGCGTCTCCGACCCG 480 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 GACCAAGGCGGCGAAGGTGGAGGCCTCCGGCGCGAGGAAGAAAGCCCTGACGACGCCGAG 540 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 GAGCAAGCCCGTCCGGCCGAGGCAGGATCCGTTCCTCAGCGTGAAGCACCAGAAGCAGGA 600 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 GCCCGTCGCGGCGGCGGCGAGGAAGGGGACCGTCGCGAAAGCTCTGTTCATGGCCACGCC 660 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 GAAGAAGGACGCCAGCAAGACGCCGGCGAAGGCCCAGGCGGCGCCGCCGCTGTCCGAGGT 720 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 CTGCTCCAAGATGAGGAAGCTGAATTTGGCGTGCCGGGAGGTGCCTAGCAGATACCTCTG 780 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 TCAGTCATCGAATCCGAAGAGTTCCAAGAAATGCGACCAGACTGCAGTGAAGAGTGTCAA 840 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 GGCAGCTCAAAATTCCAGGCCGGATGAGAGGAAGAAGAAGAAGATTCTAGGCTGCTCGTT 900 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 GCAACATGCCAGTTCTGAAGCTGGTAGAGAGAACAGAAATGGCCGTGAGAACACAGCTGC 960 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 AGATGAGAATGCTTGTCCAGAAGCTGCGAGCTCCAGCGAGGAACCGAAGGAGGTGATGCA 1020 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 GGAATCCAGAATTGAGGTGGAGACATCACAAGCTGACAATTGTGATGACGATAAGGAGAA 1080 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 TTTGTCATATGTTGATCAGCCAACCGAACAAATGGTGATCATCTCGCATTCTGATGGTGA 1140 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 AAACCTGCAGCAGCTGGAGAACAATGAGAATGTCCCTCGGAAGGTAGCCAAAATGCAGAG 1200 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 CAAACTGAACGCAGAGCAAGGAGGAAAGCTCAAGAAAACTACCAATCCGAAGCCATTTCG 1260 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 GCTAAGGACTGATGAAAGAGGAGTGTTGAGAGAAGCAAATCCAGAAAGACACCAGACGCT 1320 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 CACCGAGAACAACTCCACGGCCGCAGTTCAGCAAATAGGAAGGTGTCGTGACGGAAAGGG 1380 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 ACGAGACAAACCGACGTGCGGCGAGAAACAGAAGAAGCAAATCAGAAATGTTGCAACGGG 1440 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 TCAGGTTGATGAAGCCAAAAGGGTCTTGAACAGCATTCGTTGCAACAAGGTGAAGCCTGC 1500 consensus_2915#1 ------------------------------------------------------------ consensus_2915#0 GATGACGAATGGAAAAACAGTTGGGAAATCACAGGGAGCTTCCAGAGTAGCATCATCAAC 1560 consensus_2915#1 --------------------------------------------GAGTAGCATCATCAAC 16 **************** consensus_2915#0 AAGAAGTACCAAGATAACAAGTGGCTCCATGGCACCTTCTAAGGTTGGAAAAGAGAAGAG 1620 consensus_2915#1 AAGAAGTACCAAGATAACAAGTGGCTCCATGGCACCTTCTAAGGTTGGAAAAGAGAAGAG 76 ************************************************************ consensus_2915#0 TACATCGGTGAAACTATCCAGGCTACAAGCAGCTGCTGCTTAACTGAAGTGACAAATGTT 1680 consensus_2915#1 TACATCGGTGAAACTATCCAGGCTACAAGCAGCTGCTGCTTAACTGAAGTGACAAATGTT 136 ************************************************************ consensus_2915#0 TTATTGTCAGCTCCAAGCATGAAAATATGTATTTACCGCGTCGAATTCGTTCCATTGTAT 1740 consensus_2915#1 TTATTGTCAGCTCCAAGCATGAAAATATGTATTTACCGCGTCGAATTCGTTCCATTGTAT 196 ************************************************************ consensus_2915#0 TCTTGAACTACTCTCTAGTCTGCACACTCACTCACACCAACAAGGATGTATCATGTTCCC 1800 consensus_2915#1 TCTTGAACTACTCTCTAGTCTGCACACTCACTCACACCAACAAGGATGTATCATGTTCCC 256 ************************************************************ consensus_2915#0 TTGTTTTGTCCGTGCCATTGGTATGTTGAGTGAAATTT 1838 consensus_2915#1 TTGTTTTGTCAAAAAAAAAAAAAAA------------- 281 ********** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||