These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [GCANNNNGGTTTCCCCNNNTCGAACAGATTTTGAAGAATGTTGAGTGGCCGGATGAGTTCCCATTCAAGGCCGAAGACTTCAGCCGCTTCGATGAATCATCAGACGCTCTGTTCTACTCGGCTCCCCGTTATGTGACTCACATTGATGACCAAGCAATCGAGGCTCTCACGAAATACTACTCAGAAGTTCTTCCTCCAAGCAACACTCCTGGGGTGGCCATCCTGGACATGTGCAGCAGCTGGGTGAGCCATTATCCACCCGGGTACAAACAAGAGAAGATTGTGGGGATGGGTATGAATGAAGATGAATTGAAAAGGAATCCGGTGTTAACAGAGTACGTTGTGCAAGACCTCAATGTGAACCCGAAGCTTCCTTTCGAGGATAACACATTTGATGTTATAACCAACGTGGTTAGTGTAGACTACTTGACAAAGCCAATTGATGTTNNNNNNGAAATGAGACGAATACTTAAACCGAGTGGATTGGCCATAATGAGTTTTNNNNNNCGCTGCNNNNGGNNNNNNNNTATATCTATANNNNNNTCAACNN] [+] EMBL CF196204 [GCANNNNGGTTTCCCCNNNTCGAACAGATTTTGAAGAATGTTGAGTGGCCGGATGAGTTCCCATTCAAGGCCGAAGACTTCAGCCGCTTCGATGAATCATCAGACGCTCTGTTCTACTCGGCTCCCCGTTATGTGACTCACATTGATGACCAAGCAATCGAGGCTCTCACGAAATACTACTCAGAAGTTCTTCCTCCAAGCAACACTCCTGGGGTGGCCATCCTGGACATGTGCAGCAGCTGGGTGAGCCATTATCCACCCGGGTACAAACAAGAGAAGATTGTGGGGATGGGTATGAATGAAGATGAATTGAAAAGGAATCCGGTGTTAACAGAGTACGTTGTGCAAGACCTCAATGTGAACCCGAAGCTTCCTTTCGAGGATAACACATTTGATGTTATAACCAACGTGGTTAGTGTAGACTACTTGACAAAGCCAATTGATGTTNNNNNNGAAATGAGACGAATACTTAAACCGAGTGGATTGGCCATAATGAGTTTTNNNNNNCGCTGCNNNNGGNNNNNNNNTATATCTATANNNNNNTCAACNN] consensusID : consensus_2920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [CCATTATCCACCCGGGTACAAACAAGAGAAGATTGTGGGGATGGGTATGAATGAAGATGAATTGAAAAGGAATCCGGTGTTAACAGAGTACGTTGTGCAAGACCTCAATGTGAACCCGAAGCTTCCTTTCGAGGATAACACATTTGATGTTATAACCAACGTGGTTAGTGTAGACTACTTGACAAAGCCAATTGATGTTTTCAAGGAAATGAGACGAATACTTAAACCGAGTGGATTGGCCATAATGAGTTTTTCAAATCGCTGCTTTTGGACAAAGGCTATATCTATATGGACGTCAACCGGTGATGCTGATCACGCTTGGATAGTTGGGGCTTACTTCCATTATGCTGGAGATTTTGAATCTCCTGAGGCTATTGATATATCTCCTAATCCTGGACGACGAACAGACCCGATGTATGTTGTCCAGTCCAGAAAGAGAATAGCTTGATTAATATCATAGGTTCTATACAGATTTTGTGTAATGCACAACGTGATGGCTATTTTTCTACTGGTCACTTTCGAAACGTAAATATGCAGACAGATCTGG] [+] EMBL CA764519 [CCATTATCCACCCGGGTACAAACAAGAGAAGATTGTGGGGATGGGTATGAATGAAGATGAATTGAAAAGGAATCCGGTGTTAACAGAGTACGTTGTGCAAGACCTCAATGTGAACCCGAAGCTTCCTTTCGAGGATAACACATTTGATGTTATAACCAACGTGGTTAGTGTAGACTACTTGACAAAGCCAATTGATGTTTTCAAGGAAATGAGACGAATACTTAAACCGAGTGGATTGGCCATAATGAGTTTTTCAAATCGCTGCTTTTGGACAAAGGCTATATCTATATGGACGTCAACCGGTGATGCTGATCACGCTTGGATAGTTGGGGCTTACTTCCATTATGCTGGAGATTTTGAATCTCCTGAGGCTATTGATATATCTCCTAATCCTGGACGACGAACAGACCCGATGTATGTTGTCCAGTCCAGAAAGAGAATAGCTTGATTAATATCATAGGTTCTATACAGATTTTGTGTAATGCACAACGTGATGGCTATTTTTCTACTGGTCACTTTCGAAACGTAAATATGCAGACAGATCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2920#0 GCANNNNGGTTTCCCCNNNTCGAACAGATTTTGAAGAATGTTGAGTGGCCGGATGAGTTC 60 consensus_2920#1 ------------------------------------------------------------ consensus_2920#0 CCATTCAAGGCCGAAGACTTCAGCCGCTTCGATGAATCATCAGACGCTCTGTTCTACTCG 120 consensus_2920#1 ------------------------------------------------------------ consensus_2920#0 GCTCCCCGTTATGTGACTCACATTGATGACCAAGCAATCGAGGCTCTCACGAAATACTAC 180 consensus_2920#1 ------------------------------------------------------------ consensus_2920#0 TCAGAAGTTCTTCCTCCAAGCAACACTCCTGGGGTGGCCATCCTGGACATGTGCAGCAGC 240 consensus_2920#1 ------------------------------------------------------------ consensus_2920#0 TGGGTGAGCCATTATCCACCCGGGTACAAACAAGAGAAGATTGTGGGGATGGGTATGAAT 300 consensus_2920#1 --------CCATTATCCACCCGGGTACAAACAAGAGAAGATTGTGGGGATGGGTATGAAT 52 **************************************************** consensus_2920#0 GAAGATGAATTGAAAAGGAATCCGGTGTTAACAGAGTACGTTGTGCAAGACCTCAATGTG 360 consensus_2920#1 GAAGATGAATTGAAAAGGAATCCGGTGTTAACAGAGTACGTTGTGCAAGACCTCAATGTG 112 ************************************************************ consensus_2920#0 AACCCGAAGCTTCCTTTCGAGGATAACACATTTGATGTTATAACCAACGTGGTTAGTGTA 420 consensus_2920#1 AACCCGAAGCTTCCTTTCGAGGATAACACATTTGATGTTATAACCAACGTGGTTAGTGTA 172 ************************************************************ consensus_2920#0 GACTACTTGACAAAGCCAATTGATGTTNNNNNNGAAATGAGACGAATACTTAAACCGAGT 480 consensus_2920#1 GACTACTTGACAAAGCCAATTGATGTTTTCAAGGAAATGAGACGAATACTTAAACCGAGT 232 *************************** *************************** consensus_2920#0 GGATTGGCCATAATGAGTTTTNNNNNNCGCTGCNNNNGGNNNNNNNNTATATCTATANNN 540 consensus_2920#1 GGATTGGCCATAATGAGTTTTTCAAATCGCTGCTTTTGGACAAAGGCTATATCTATATGG 292 ********************* ****** ** ********** consensus_2920#0 NNNTCAACNN-------------------------------------------------- 550 consensus_2920#1 ACGTCAACCGGTGATGCTGATCACGCTTGGATAGTTGGGGCTTACTTCCATTATGCTGGA 352 ***** consensus_2920#0 ------------------------------------------------------------ consensus_2920#1 GATTTTGAATCTCCTGAGGCTATTGATATATCTCCTAATCCTGGACGACGAACAGACCCG 412 consensus_2920#0 ------------------------------------------------------------ consensus_2920#1 ATGTATGTTGTCCAGTCCAGAAAGAGAATAGCTTGATTAATATCATAGGTTCTATACAGA 472 consensus_2920#0 ------------------------------------------------------------ consensus_2920#1 TTTTGTGTAATGCACAACGTGATGGCTATTTTTCTACTGGTCACTTTCGAAACGTAAATA 532 consensus_2920#0 --------------- consensus_2920#1 TGCAGACAGATCTGG 547 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||