These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [CGTGCCACGCGCCGCTCTCCTGCAGCATCCGCCGCCGCCGCCGCCGCCCGCGTCGCTCCCCTCCACCGCGTGCACGTCCTCCTCGCGCCGCCGCCCTCTCCGTGGGGCGGCGCTGGGCGGTTGATACGGTTACGCCTGCGGGGGCACTGCCCTCGCCCGCCTCGGCGCGCGCGCGAGGGTGGTCTCCCCGCGCTGCTCCTCCTACGGCGCCGCGCCGANGCCGGGGAGTCGCCGCGGAGGGCTCCGAAGGTCTTGAAGTNCCCGGGGNCAAAA] [+] EMBL AU164305 [CGTGCCACGCGCCGCTCTCCTGCAGCATCCGCCGCCGCCGCCGCCGCCCGCGTCGCTCCCCTCCACCGCGTGCACGTCCTCCTCGCGCCGCCGCCCTCTCCGTGGGGCGGCGCTGGGCGGTTGATACGGTTACGCCTGCGGGGGCACTGCCCTCGCCCGCCTCGGCGCGCGCGCGAGGGTGGTCTCCCCGCGCTGCTCCTCCTACGGCGCCGCGCCGANGCCGGGGAGTCGCCGCGGAGGGCTCCGAAGGTCTTGAAGTNCCCGGGGNCAAAA] consensusID : consensus_2947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [TGCCACGCGCCGCTCTCCTGCAGCATCCGCCGCCGCCGCCGCCGCCCGCTTCGCTCCCCTCCACCGCGTGCACGTCCTCCTCGCGCCGCCGGNCTCTCCGTGGGGCGGCGCTGGGCGGTTAANACGGTTACGCCTGCGGGGGCACTGCCCCTNGCCCGCNTCGGCGCGCGCCGCGAGGGTGGTCTCNNCGCGCTGCTNNTTCTACGGCGCCGTNNCNACGCCGGGAAGTCGCCCGCGGAGGCGCTCCGAAGGTCCTGG] [+] EMBL AU162174 [TGCCACGCGCCGCTCTCCTGCAGCATCCGCCGCCGCCGCCGCCGCCCGCTTCGCTCCCCTCCACCGCGTGCACGTCCTCCTCGCGCCGCCGGNCTCTCCGTGGGGCGGCGCTGGGCGGTTAANACGGTTACGCCTGCGGGGGCACTGCCCCTNGCCCGCNTCGGCGCGCGCCGCGAGGGTGGTCTCNNCGCGCTGCTNNTTCTACGGCGCCGTNNCNACGCCGGGAAGTCGCCCGCGGAGGCGCTCCGAAGGTCCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2947#0 CGTGCCACGCGCCGCTCTCCTGCAGCATCCGCCGCCGCCGCCGCCGCCCGCGTCGCTCCC 60 consensus_2947#1 --TGCCACGCGCCGCTCTCCTGCAGCATCCGCCGCCGCCGCCGCCGCCCGCTTCGCTCCC 58 ************************************************* ******** consensus_2947#0 CTCCACCGCGTGCACGTCCTCCTCGCGCCGCCGCCCTCTCCGTGGGGCGGCGCTGGGCGG 120 consensus_2947#1 CTCCACCGCGTGCACGTCCTCCTCGCGCCGCCGGNCTCTCCGTGGGGCGGCGCTGGGCGG 118 ********************************* ************************* consensus_2947#0 TTGATACGGTTACGCCTGCGGGGGCACTGCCC-TCGCCCGCCTCGGCGCGCGC-GCGAGG 178 consensus_2947#1 TTAANACGGTTACGCCTGCGGGGGCACTGCCCCTNGCCCGCNTCGGCGCGCGCCGCGAGG 178 ** * *************************** * ****** *********** ****** consensus_2947#0 GTGGTCTCCCCGCGCTGCTCCTCCTACGGCGCCGCGCCGANGCCGGGGAGTCGCC-GCGG 237 consensus_2947#1 GTGGTCTCNNCGCGCTGCTNNTTCTACGGCGCCGTNNCNACGCCGGGAAGTCGCCCGCGG 238 ******** ********* * *********** * * ****** ******* **** consensus_2947#0 AGG-GCTCCGAAGGTCTTGAAGTNCCCGGGGNCAAAA 273 consensus_2947#1 AGGCGCTCCGAAGGTCCTGG----------------- 258 *** ************ ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||