These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 844 fasta sequence [TCCTCCTCCTCCTCCTCTTCCTCCTTGCCGCCGCGACGGCGACGGCGACGGCGACGGGCAACGCGCTGCCGCCGGAGCCGAAGCCGGCGCGGTGGCCGGACGTCTTCCACGCGAGGCTGTTCACGAACCTGACCAACCACTCCGCCGCGTCGACGGGGCCACCGCTGCGTGTCGCCGACCTCTACTACGACTGGTCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCCGCCGACGACCCGCTCTACGACGTCGAGTGGGACAACGGCACCACCTTCTACTTCGACTCCCGCTCCTGCCGCACCGAGCGCTTCCCCGTCGGCGTGCTCCGCCCGGGCTGGCTCGCCGACGGCGGCGGCGTCGTCTACCTCGGCCGGTGGCGCACCGGCGGGATCGAGTGCGACGTGTGGGACAAGCTGGGGTTCGTCGTCTACTACCAGGAGGTCGCCACCGGGCGCCCCGTCCGCTGGAACTTCCTCGACAAGACAGGGATACAGCAATTCGTGATGAGCTTCGAGGTCGGCGTGACCCTGGAGGACGATTCCCAGTGGCAGGCGCCCGCACACTGCTTCCCTGCCGCCGCCGCAGACGAAGATGAAGAGGAAGAGGAAGATGAAGAACAGGATGAGATGATCAAGAGCAGCTATGATCACATTGAGGGTGTGGATGACGGGCTCGACGCCGCCAGGTTACTCAGGATGCTCGCAGGAGCTGCGGCGTTTTAGTTACCAAGTGGCTCGAATTTTTGTGCAAACATATACTGGTACAGGCTTACAGCACAGTACTGTATAAGAGAGTGTGGTTAATTCAGGAATTTTTCAAGAAGGGTTAATTG] [+] EMBL AK068238 [TCCTCCTCCTCCTCCTCTTCCTCCTTGCCGCCGCGACGGCGACGGCGACGGCGACGGGCAACGCGCTGCCGCCGGAGCCGAAGCCGGCGCGGTGGCCGGACGTCTTCCACGCGAGGCTGTTCACGAACCTGACCAACCACTCCGCCGCGTCGACGGGGCCACCGCTGCGTGTCGCCGACCTCTACTACGACTGGTCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCCGCCGACGACCCGCTCTACGACGTCGAGTGGGACAACGGCACCACCTTCTACTTCGACTCCCGCTCCTGCCGCACCGAGCGCTTCCCCGTCGGCGTGCTCCGCCCGGGCTGGCTCGCCGACGGCGGCGGCGTCGTCTACCTCGGCCGGTGGCGCACCGGCGGGATCGAGTGCGACGTGTGGGACAAGCTGGGGTTCGTCGTCTACTACCAGGAGGTCGCCACCGGGCGCCCCGTCCGCTGGAACTTCCTCGACAAGACAGGGATACAGCAATTCGTGATGAGCTTCGAGGTCGGCGTGACCCTGGAGGACGATTCCCAGTGGCAGGCGCCCGCACACTGCTTCCCTGCCGCCGCCGCAGACGAAGATGAAGAGGAAGAGGAAGATGAAGAACAGGATGAGATGATCAAGAGCAGCTATGATCACATTGAGGGTGTGGATGACGGGCTCGACGCCGCCAGGTTACTCAGGATGCTCGCAGGAGCTGCGGCGTTTTAGTTACCAAGTGGCTCGAATTTTTGTGCAAACATATACTGGTACAGGCTTACAGCACAGTACTGTATAAGAGAGTGTGGTTAATTCAGGAATTTTTCAAGAAGGGTTAATTG] consensusID : consensus_2956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 166 fasta sequence [CAACCACTCCGCCGCGTCGACGGGGCCGCCGCTGCGTGTCGCCGACCTCTACTACGACTGGCCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCNNNCGACGACCCGCTCTACGACGNNNAGNGGGACAACGGCACCANCNTCTNNNNNNNCNNN] [+] EMBL CF196093 [CAACCACTCCGCCGCGTCGACGGGGCCGCCGCTGCGTGTCGCCGACCTCTACTACGACTGGCCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCNNNCGACGACCCGCTCTACGACGNNNAGNGGGACAACGGCACCANCNTCTNNNNNNNCNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2956#0 TCCTCCTCCTCCTCCTCTTCCTCCTTGCCGCCGCGACGGCGACGGCGACGGCGACGGGCA 60 consensus_2956#1 ------------------------------------------------------------ consensus_2956#0 ACGCGCTGCCGCCGGAGCCGAAGCCGGCGCGGTGGCCGGACGTCTTCCACGCGAGGCTGT 120 consensus_2956#1 ------------------------------------------------------------ consensus_2956#0 TCACGAACCTGACCAACCACTCCGCCGCGTCGACGGGGCCACCGCTGCGTGTCGCCGACC 180 consensus_2956#1 -------------CAACCACTCCGCCGCGTCGACGGGGCCGCCGCTGCGTGTCGCCGACC 47 *************************** ******************* consensus_2956#0 TCTACTACGACTGGTCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCCG 240 consensus_2956#1 TCTACTACGACTGGCCGCGGCGGCGCAACCTCAACCTGATCCGCTACCAGCTCGCCGCNN 107 ************** ******************************************* consensus_2956#0 CCGACGACCCGCTCTACGACGTCGAGTGGGACAACGGCACCACCTTCTACTTCGACTCCC 300 consensus_2956#1 NCGACGACCCGCTCTACGACGNNNAGNGGGACAACGGCACCANCNTCTNNNNNNNCNNN- 166 ******************** ** *************** * *** * consensus_2956#0 GCTCCTGCCGCACCGAGCGCTTCCCCGTCGGCGTGCTCCGCCCGGGCTGGCTCGCCGACG 360 consensus_2956#1 ------------------------------------------------------------ consensus_2956#0 GCGGCGGCGTCGTCTACCTCGGCCGGTGGCGCACCGGCGGGATCGAGTGCGACGTGTGGG 420 consensus_2956#1 ------------------------------------------------------------ consensus_2956#0 ACAAGCTGGGGTTCGTCGTCTACTACCAGGAGGTCGCCACCGGGCGCCCCGTCCGCTGGA 480 consensus_2956#1 ------------------------------------------------------------ consensus_2956#0 ACTTCCTCGACAAGACAGGGATACAGCAATTCGTGATGAGCTTCGAGGTCGGCGTGACCC 540 consensus_2956#1 ------------------------------------------------------------ consensus_2956#0 TGGAGGACGATTCCCAGTGGCAGGCGCCCGCACACTGCTTCCCTGCCGCCGCCGCAGACG 600 consensus_2956#1 ------------------------------------------------------------ consensus_2956#0 AAGATGAAGAGGAAGAGGAAGATGAAGAACAGGATGAGATGATCAAGAGCAGCTATGATC 660 consensus_2956#1 ------------------------------------------------------------ consensus_2956#0 ACATTGAGGGTGTGGATGACGGGCTCGACGCCGCCAGGTTACTCAGGATGCTCGCAGGAG 720 consensus_2956#1 ------------------------------------------------------------ consensus_2956#0 CTGCGGCGTTTTAGTTACCAAGTGGCTCGAATTTTTGTGCAAACATATACTGGTACAGGC 780 consensus_2956#1 ------------------------------------------------------------ consensus_2956#0 TTACAGCACAGTACTGTATAAGAGAGTGTGGTTAATTCAGGAATTTTTCAAGAAGGGTTA 840 consensus_2956#1 ------------------------------------------------------------ consensus_2956#0 ATTG 844 consensus_2956#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||