These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 945 fasta sequence [GGAGGAATTGAAGGTGTTGGGTGCCAAGAAGGCGGAGATGGATGCGAGGGTGGTGTCTTTGGAGGCGGAGCTCAAAGCTGCTGTGGCTAAGAGAGGGGAATTGGAGGCTGATGCCGTGGCGAAGAAGGGGGAATTCGATATGGTGAAGGGCAAAAACGATAGGCTTCGTTCGGAGGTCGCGACAGCAGTGAAGAAGCATCGCGCATCTGAGGCAGAGGTTGAGAGGCTCTGCGCGGAATTGGGCGTGCTGACAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGGTATCATGAGGGAATTTGGGGAGCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGGAGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCTCAAGCTGTTAAGCTCAGAAATGAATTGAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACGAAGCGCTCGCTCCTGAATGATGAGAAGAATTCTGTTCAGGAGGCACTGGATGCTGAGAAGGCTGAAGCGTGCAAGCTGAAGTCGAAAATTGAGGCTATTGAGAACTGCAATGTTGAGAAGGACGGTGAGATTGGGAAGCTGAAGGTGGCACTGATGGAAAAGAGGGCGAAGATCGATGTTCTAATCAAGGACATCGAGCAGCTGAATCTCGAAGTGGCTGAGGCACATAGGAAGAGGAAGGGTGGCATTTGGGCTTGGCTATATGCGGCTACGACTACCATGGTGGCTGCCATCTCCTTCATCTATGCCACCAAGTCCCGGTGAAGGACTTACACTTTTCTTTTTGCTATGTTCCGTTTTCTGTTTACATGCTTATCAGTATGCAACTCGATATGATAAGGTTGCTATCTCGCTGAATTACTCTATGATGGTGATTGGCTGCCACTATGCAATGAAGTGAAACTTTT] [+] EMBL AK059455 [GGAGGAATTGAAGGTGTTGGGTGCCAAGAAGGCGGAGATGGATGCGAGGGTGGTGTCTTTGGAGGCGGAGCTCAAAGCTGCTGTGGCTAAGAGAGGGGAATTGGAGGCTGATGCCGTGGCGAAGAAGGGGGAATTCGATATGGTGAAGGGCAAAAACGATAGGCTTCGTTCGGAGGTCGCGACAGCAGTGAAGAAGCATCGCGCATCTGAGGCAGAGGTTGAGAGGCTCTGCGCGGAATTGGGCGTGCTGACAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGGTATCATGAGGGAATTTGGGGAGCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGGAGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCTCAAGCTGTTAAGCTCAGAAATGAATTGAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACGAAGCGCTCGCTCCTGAATGATGAGAAGAATTCTGTTCAGGAGGCACTGGATGCTGAGAAGGCTGAAGCGTGCAAGCTGAAGTCGAAAATTGAGGCTATTGAGAACTGCAATGTTGAGAAGGACGGTGAGATTGGGAAGCTGAAGGTGGCACTGATGGAAAAGAGGGCGAAGATCGATGTTCTAATCAAGGACATCGAGCAGCTGAATCTCGAAGTGGCTGAGGCACATAGGAAGAGGAAGGGTGGCATTTGGGCTTGGCTATATGCGGCTACGACTACCATGGTGGCTGCCATCTCCTTCATCTATGCCACCAAGTCCCGGTGAAGGACTTACACTTTTCTTTTTGCTATGTTCCGTTTTCTGTTTACATGCTTATCAGTATGCAACTCGATATGATAAGGTTGCTATCTCGCTGAATTACTCTATGATGGTGATTGGCTGCCACTATGCAATGAAGTGAAACTTTT] consensusID : consensus_2971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [GAATTCGATATGGTGAAGGGCGAAAACGATAGGCTTCGTTCGGAGGTCGCGACAGCAGTGGAGAAGCATCGCACATCTGAGGCAGAGGTTGAGAGGCTCTGCACGGAATTGGGCGTGGTGAGAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGGTATCATGAGGGAATTGGGGGACCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGGAGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCCCAAGCTGTTAAGCTGAGAAATGAATTGAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACAAAGCGCTCGCTCCTGAATGATGAGAAGAATTATGTTCAGGAGGCACTGGATGCTGAGAAGGCTGAAGCGCGCAAGCTGAAGTCGAAAATTGAGGCTCTTGAGAACTGCAATGTTGAGAAGGACAGTGAGATTGGGAAGCTGAAGTTGGCACTGATGGAAAAGAGGGAGAAGATTGATGTCCTAATCAAGGACATTGAGCTGCTGAATCTNNNNNTNGCTGANNNNCATANNAAGAGGAAGGGTGGCATTTGGGCTTGGCTCNNTGCGGCNNNGACTANNATGNNNGCTGCCNNNTCCTTNNNNNATGCCANNNNNNCCCGNNNNNNNACTACACNN] [+] EMBL CF196183 [GAATTCGATATGGTGAAGGGCGAAAACGATAGGCTTCGTTCGGAGGTCGCGACAGCAGTGGAGAAGCATCGCACATCTGAGGCAGAGGTTGAGAGGCTCTGCACGGAATTGGGCGTGGTGAGAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGGTATCATGAGGGAATTGGGGGACCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGGAGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCCCAAGCTGTTAAGCTGAGAAATGAATTGAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACAAAGCGCTCGCTCCTGAATGATGAGAAGAATTATGTTCAGGAGGCACTGGATGCTGAGAAGGCTGAAGCGCGCAAGCTGAAGTCGAAAATTGAGGCTCTTGAGAACTGCAATGTTGAGAAGGACAGTGAGATTGGGAAGCTGAAGTTGGCACTGATGGAAAAGAGGGAGAAGATTGATGTCCTAATCAAGGACATTGAGCTGCTGAATCTNNNNNTNGCTGANNNNCATANNAAGAGGAAGGGTGGCATTTGGGCTTGGCTCNNTGCGGCNNNGACTANNATGNNNGCTGCCNNNTCCTTNNNNNATGCCANNNNNNCCCGNNNNNNNACTACACNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2971#0 GGAGGAATTGAAGGTGTTGGGTGCCAAGAAGGCGGAGATGGATGCGAGGGTGGTGTCTTT 60 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 GGAGGCGGAGCTCAAAGCTGCTGTGGCTAAGAGAGGGGAATTGGAGGCTGATGCCGTGGC 120 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 GAAGAAGGGGGAATTCGATATGGTGAAGGGCAAAAACGATAGGCTTCGTTCGGAGGTCGC 180 consensus_2971#1 ----------GAATTCGATATGGTGAAGGGCGAAAACGATAGGCTTCGTTCGGAGGTCGC 50 ********************* **************************** consensus_2971#0 GACAGCAGTGAAGAAGCATCGCGCATCTGAGGCAGAGGTTGAGAGGCTCTGCGCGGAATT 240 consensus_2971#1 GACAGCAGTGGAGAAGCATCGCACATCTGAGGCAGAGGTTGAGAGGCTCTGCACGGAATT 110 ********** *********** ***************************** ******* consensus_2971#0 GGGCGTGCTGACAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGG 300 consensus_2971#1 GGGCGTGGTGAGAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGG 170 ******* *** ************************************************ consensus_2971#0 TATCATGAGGGAATTTGGGGAGCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGG 360 consensus_2971#1 TATCATGAGGGAATTGGGGGACCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGG 230 *************** ***** ************************************** consensus_2971#0 AGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCTCAAGCTGTTAAGCTCAGAAATGAATT 420 consensus_2971#1 AGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCCCAAGCTGTTAAGCTGAGAAATGAATT 290 ********************************* ************** *********** consensus_2971#0 GAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACGAA 480 consensus_2971#1 GAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACAAA 350 ********************************************************* ** consensus_2971#0 GCGCTCGCTCCTGAATGATGAGAAGAATTCTGTTCAGGAGGCACTGGATGCTGAGAAGGC 540 consensus_2971#1 GCGCTCGCTCCTGAATGATGAGAAGAATTATGTTCAGGAGGCACTGGATGCTGAGAAGGC 410 ***************************** ****************************** consensus_2971#0 TGAAGCGTGCAAGCTGAAGTCGAAAATTGAGGCTATTGAGAACTGCAATGTTGAGAAGGA 600 consensus_2971#1 TGAAGCGCGCAAGCTGAAGTCGAAAATTGAGGCTCTTGAGAACTGCAATGTTGAGAAGGA 470 ******* ************************** ************************* consensus_2971#0 CGGTGAGATTGGGAAGCTGAAGGTGGCACTGATGGAAAAGAGGGCGAAGATCGATGTTCT 660 consensus_2971#1 CAGTGAGATTGGGAAGCTGAAGTTGGCACTGATGGAAAAGAGGGAGAAGATTGATGTCCT 530 * ******************** ********************* ****** ***** ** consensus_2971#0 AATCAAGGACATCGAGCAGCTGAATCTCGAAGTGGCTGAGGCACATAGGAAGAGGAAGGG 720 consensus_2971#1 AATCAAGGACATTGAGCTGCTGAATCTNNNNNTNGCTGANNNNCATANNAAGAGGAAGGG 590 ************ **** ********* * ***** **** *********** consensus_2971#0 TGGCATTTGGGCTTGGCTATATGCGGCTACGACTACCATGGTGGCTGCCATCTCCTTCAT 780 consensus_2971#1 TGGCATTTGGGCTTGGCTCNNTGCGGCNNNGACTANNATGNNNGCTGCCNNNTCCTTNNN 650 ****************** ****** ***** *** ****** ***** consensus_2971#0 CTATGCCACCAAGTCCCGGTGAAGGACTTACACTTTTCTTTTTGCTATGTTCCGTTTTCT 840 consensus_2971#1 NNATGCCANNNNNNCCCGNNNNNNNACT-ACACNN------------------------- 684 ****** **** *** **** consensus_2971#0 GTTTACATGCTTATCAGTATGCAACTCGATATGATAAGGTTGCTATCTCGCTGAATTACT 900 consensus_2971#1 ------------------------------------------------------------ consensus_2971#0 CTATGATGGTGATTGGCTGCCACTATGCAATGAAGTGAAACTTTT 945 consensus_2971#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||