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Oryza sativa
cluster # 2971 cluster # 2971       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2971#0 length = 945 sequences # 1  
consensus_2971#1 length = 684 sequences # 1  

consensusID : consensus_2971#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 945
fasta sequence
                              [GGAGGAATTGAAGGTGTTGGGTGCCAAGAAGGCGGAGATGGATGCGAGGGTGGTGTCTTTGGAGGCGGAGCTCAAAGCTGCTGTGGCTAAGAGAGGGGAATTGGAGGCTGATGCCGTGGCGAAGAAGGGGGAATTCGATATGGTGAAGGGCAAAAACGATAGGCTTCGTTCGGAGGTCGCGACAGCAGTGAAGAAGCATCGCGCATCTGAGGCAGAGGTTGAGAGGCTCTGCGCGGAATTGGGCGTGCTGACAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGGTATCATGAGGGAATTTGGGGAGCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGGAGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCTCAAGCTGTTAAGCTCAGAAATGAATTGAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACGAAGCGCTCGCTCCTGAATGATGAGAAGAATTCTGTTCAGGAGGCACTGGATGCTGAGAAGGCTGAAGCGTGCAAGCTGAAGTCGAAAATTGAGGCTATTGAGAACTGCAATGTTGAGAAGGACGGTGAGATTGGGAAGCTGAAGGTGGCACTGATGGAAAAGAGGGCGAAGATCGATGTTCTAATCAAGGACATCGAGCAGCTGAATCTCGAAGTGGCTGAGGCACATAGGAAGAGGAAGGGTGGCATTTGGGCTTGGCTATATGCGGCTACGACTACCATGGTGGCTGCCATCTCCTTCATCTATGCCACCAAGTCCCGGTGAAGGACTTACACTTTTCTTTTTGCTATGTTCCGTTTTCTGTTTACATGCTTATCAGTATGCAACTCGATATGATAAGGTTGCTATCTCGCTGAATTACTCTATGATGGTGATTGGCTGCCACTATGCAATGAAGTGAAACTTTT]

[+] EMBL AK059455             [GGAGGAATTGAAGGTGTTGGGTGCCAAGAAGGCGGAGATGGATGCGAGGGTGGTGTCTTTGGAGGCGGAGCTCAAAGCTGCTGTGGCTAAGAGAGGGGAATTGGAGGCTGATGCCGTGGCGAAGAAGGGGGAATTCGATATGGTGAAGGGCAAAAACGATAGGCTTCGTTCGGAGGTCGCGACAGCAGTGAAGAAGCATCGCGCATCTGAGGCAGAGGTTGAGAGGCTCTGCGCGGAATTGGGCGTGCTGACAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGGTATCATGAGGGAATTTGGGGAGCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGGAGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCTCAAGCTGTTAAGCTCAGAAATGAATTGAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACGAAGCGCTCGCTCCTGAATGATGAGAAGAATTCTGTTCAGGAGGCACTGGATGCTGAGAAGGCTGAAGCGTGCAAGCTGAAGTCGAAAATTGAGGCTATTGAGAACTGCAATGTTGAGAAGGACGGTGAGATTGGGAAGCTGAAGGTGGCACTGATGGAAAAGAGGGCGAAGATCGATGTTCTAATCAAGGACATCGAGCAGCTGAATCTCGAAGTGGCTGAGGCACATAGGAAGAGGAAGGGTGGCATTTGGGCTTGGCTATATGCGGCTACGACTACCATGGTGGCTGCCATCTCCTTCATCTATGCCACCAAGTCCCGGTGAAGGACTTACACTTTTCTTTTTGCTATGTTCCGTTTTCTGTTTACATGCTTATCAGTATGCAACTCGATATGATAAGGTTGCTATCTCGCTGAATTACTCTATGATGGTGATTGGCTGCCACTATGCAATGAAGTGAAACTTTT]


>consensus_2971#0 GGAGGAATTGAAGGTGTTGGGTGCCAAGAAGGCGGAGATGGATGCGAGGGTGGTGTCTTT GGAGGCGGAGCTCAAAGCTGCTGTGGCTAAGAGAGGGGAATTGGAGGCTGATGCCGTGGC GAAGAAGGGGGAATTCGATATGGTGAAGGGCAAAAACGATAGGCTTCGTTCGGAGGTCGC GACAGCAGTGAAGAAGCATCGCGCATCTGAGGCAGAGGTTGAGAGGCTCTGCGCGGAATT GGGCGTGCTGACAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGG TATCATGAGGGAATTTGGGGAGCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGG AGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCTCAAGCTGTTAAGCTCAGAAATGAATT GAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACGAA GCGCTCGCTCCTGAATGATGAGAAGAATTCTGTTCAGGAGGCACTGGATGCTGAGAAGGC TGAAGCGTGCAAGCTGAAGTCGAAAATTGAGGCTATTGAGAACTGCAATGTTGAGAAGGA CGGTGAGATTGGGAAGCTGAAGGTGGCACTGATGGAAAAGAGGGCGAAGATCGATGTTCT AATCAAGGACATCGAGCAGCTGAATCTCGAAGTGGCTGAGGCACATAGGAAGAGGAAGGG TGGCATTTGGGCTTGGCTATATGCGGCTACGACTACCATGGTGGCTGCCATCTCCTTCAT CTATGCCACCAAGTCCCGGTGAAGGACTTACACTTTTCTTTTTGCTATGTTCCGTTTTCT GTTTACATGCTTATCAGTATGCAACTCGATATGATAAGGTTGCTATCTCGCTGAATTACT CTATGATGGTGATTGGCTGCCACTATGCAATGAAGTGAAACTTTT



consensusID : consensus_2971#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence
                              [GAATTCGATATGGTGAAGGGCGAAAACGATAGGCTTCGTTCGGAGGTCGCGACAGCAGTGGAGAAGCATCGCACATCTGAGGCAGAGGTTGAGAGGCTCTGCACGGAATTGGGCGTGGTGAGAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGGTATCATGAGGGAATTGGGGGACCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGGAGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCCCAAGCTGTTAAGCTGAGAAATGAATTGAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACAAAGCGCTCGCTCCTGAATGATGAGAAGAATTATGTTCAGGAGGCACTGGATGCTGAGAAGGCTGAAGCGCGCAAGCTGAAGTCGAAAATTGAGGCTCTTGAGAACTGCAATGTTGAGAAGGACAGTGAGATTGGGAAGCTGAAGTTGGCACTGATGGAAAAGAGGGAGAAGATTGATGTCCTAATCAAGGACATTGAGCTGCTGAATCTNNNNNTNGCTGANNNNCATANNAAGAGGAAGGGTGGCATTTGGGCTTGGCTCNNTGCGGCNNNGACTANNATGNNNGCTGCCNNNTCCTTNNNNNATGCCANNNNNNCCCGNNNNNNNACTACACNN]

[+] EMBL CF196183             [GAATTCGATATGGTGAAGGGCGAAAACGATAGGCTTCGTTCGGAGGTCGCGACAGCAGTGGAGAAGCATCGCACATCTGAGGCAGAGGTTGAGAGGCTCTGCACGGAATTGGGCGTGGTGAGAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGGTATCATGAGGGAATTGGGGGACCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGGAGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCCCAAGCTGTTAAGCTGAGAAATGAATTGAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACAAAGCGCTCGCTCCTGAATGATGAGAAGAATTATGTTCAGGAGGCACTGGATGCTGAGAAGGCTGAAGCGCGCAAGCTGAAGTCGAAAATTGAGGCTCTTGAGAACTGCAATGTTGAGAAGGACAGTGAGATTGGGAAGCTGAAGTTGGCACTGATGGAAAAGAGGGAGAAGATTGATGTCCTAATCAAGGACATTGAGCTGCTGAATCTNNNNNTNGCTGANNNNCATANNAAGAGGAAGGGTGGCATTTGGGCTTGGCTCNNTGCGGCNNNGACTANNATGNNNGCTGCCNNNTCCTTNNNNNATGCCANNNNNNCCCGNNNNNNNACTACACNN]


>consensus_2971#1 GAATTCGATATGGTGAAGGGCGAAAACGATAGGCTTCGTTCGGAGGTCGCGACAGCAGTG GAGAAGCATCGCACATCTGAGGCAGAGGTTGAGAGGCTCTGCACGGAATTGGGCGTGGTG AGAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGGTATCATGAGG GAATTGGGGGACCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGGAGCGGCCGAG GAAGCAGGGCGTGAGAAGGACGCCCAAGCTGTTAAGCTGAGAAATGAATTGAAGGAGCTC CATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACAAAGCGCTCGCTC CTGAATGATGAGAAGAATTATGTTCAGGAGGCACTGGATGCTGAGAAGGCTGAAGCGCGC AAGCTGAAGTCGAAAATTGAGGCTCTTGAGAACTGCAATGTTGAGAAGGACAGTGAGATT GGGAAGCTGAAGTTGGCACTGATGGAAAAGAGGGAGAAGATTGATGTCCTAATCAAGGAC ATTGAGCTGCTGAATCTNNNNNTNGCTGANNNNCATANNAAGAGGAAGGGTGGCATTTGG GCTTGGCTCNNTGCGGCNNNGACTANNATGNNNGCTGCCNNNTCCTTNNNNNATGCCANN NNNNCCCGNNNNNNNACTACACNN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2971#0      GGAGGAATTGAAGGTGTTGGGTGCCAAGAAGGCGGAGATGGATGCGAGGGTGGTGTCTTT 60
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      GGAGGCGGAGCTCAAAGCTGCTGTGGCTAAGAGAGGGGAATTGGAGGCTGATGCCGTGGC 120
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      GAAGAAGGGGGAATTCGATATGGTGAAGGGCAAAAACGATAGGCTTCGTTCGGAGGTCGC 180
consensus_2971#1      ----------GAATTCGATATGGTGAAGGGCGAAAACGATAGGCTTCGTTCGGAGGTCGC 50
                                ********************* ****************************

consensus_2971#0      GACAGCAGTGAAGAAGCATCGCGCATCTGAGGCAGAGGTTGAGAGGCTCTGCGCGGAATT 240
consensus_2971#1      GACAGCAGTGGAGAAGCATCGCACATCTGAGGCAGAGGTTGAGAGGCTCTGCACGGAATT 110
                      ********** *********** ***************************** *******

consensus_2971#0      GGGCGTGCTGACAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGG 300
consensus_2971#1      GGGCGTGGTGAGAAAGGAGAAGGAGGCAGCTGCCAAGGCGTTTGATGCTGAGAAGGCGGG 170
                      ******* *** ************************************************

consensus_2971#0      TATCATGAGGGAATTTGGGGAGCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGG 360
consensus_2971#1      TATCATGAGGGAATTGGGGGACCTCAAGCAGAAGGTGGAGGAAATCCAGGCCAGCAAGGG 230
                      *************** ***** **************************************

consensus_2971#0      AGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCTCAAGCTGTTAAGCTCAGAAATGAATT 420
consensus_2971#1      AGCGGCCGAGGAAGCAGGGCGTGAGAAGGACGCCCAAGCTGTTAAGCTGAGAAATGAATT 290
                      ********************************* ************** ***********

consensus_2971#0      GAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACGAA 480
consensus_2971#1      GAAGGAGCTCCATGTCTCCATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACAAA 350
                      ********************************************************* **

consensus_2971#0      GCGCTCGCTCCTGAATGATGAGAAGAATTCTGTTCAGGAGGCACTGGATGCTGAGAAGGC 540
consensus_2971#1      GCGCTCGCTCCTGAATGATGAGAAGAATTATGTTCAGGAGGCACTGGATGCTGAGAAGGC 410
                      ***************************** ******************************

consensus_2971#0      TGAAGCGTGCAAGCTGAAGTCGAAAATTGAGGCTATTGAGAACTGCAATGTTGAGAAGGA 600
consensus_2971#1      TGAAGCGCGCAAGCTGAAGTCGAAAATTGAGGCTCTTGAGAACTGCAATGTTGAGAAGGA 470
                      ******* ************************** *************************

consensus_2971#0      CGGTGAGATTGGGAAGCTGAAGGTGGCACTGATGGAAAAGAGGGCGAAGATCGATGTTCT 660
consensus_2971#1      CAGTGAGATTGGGAAGCTGAAGTTGGCACTGATGGAAAAGAGGGAGAAGATTGATGTCCT 530
                      * ******************** ********************* ****** ***** **

consensus_2971#0      AATCAAGGACATCGAGCAGCTGAATCTCGAAGTGGCTGAGGCACATAGGAAGAGGAAGGG 720
consensus_2971#1      AATCAAGGACATTGAGCTGCTGAATCTNNNNNTNGCTGANNNNCATANNAAGAGGAAGGG 590
                      ************ **** *********     * *****    ****  ***********

consensus_2971#0      TGGCATTTGGGCTTGGCTATATGCGGCTACGACTACCATGGTGGCTGCCATCTCCTTCAT 780
consensus_2971#1      TGGCATTTGGGCTTGGCTCNNTGCGGCNNNGACTANNATGNNNGCTGCCNNNTCCTTNNN 650
                      ******************   ******   *****  ***   ******   *****   

consensus_2971#0      CTATGCCACCAAGTCCCGGTGAAGGACTTACACTTTTCTTTTTGCTATGTTCCGTTTTCT 840
consensus_2971#1      NNATGCCANNNNNNCCCGNNNNNNNACT-ACACNN------------------------- 684
                        ******      ****       *** ****                           

consensus_2971#0      GTTTACATGCTTATCAGTATGCAACTCGATATGATAAGGTTGCTATCTCGCTGAATTACT 900
consensus_2971#1      ------------------------------------------------------------
                                                                                  

consensus_2971#0      CTATGATGGTGATTGGCTGCCACTATGCAATGAAGTGAAACTTTT 945
consensus_2971#1      ---------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)