These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [GCTACTGATCNNANTNGGNATATATANANCNTGGTGNGNTTTTTTATTNAACNTGCTTTGNTNGGCNGGTNTTCCGGGCGTGTANCANATTATTGGTTGCCGGATCCAGNGAGCTTGTCTTTGCAGATCAGAGCAATAGTGGGAGAGGAATGGCGTCGAGACTGCTGGAGAGCCAAAAGGATTGGAAGGGCTTGTGGAAAATCAATGCGCCGGGAAAGATGAAAATTATTCTCTGGCGTGCTGCTCATGAATGCTTGGCGACTGGGTTTCAACTTCCACGGCGGCATATCCCCTCTACTGATGGCTGTGTTTTTTGCAACAGAGATGACACAGTGGAACATGTCTTCCTGTTCTGCCCCTTTTGTTGCTCAAATCTGGGGAGGAAATCAAAAGAAAGTGTGCTGTCAACTAGGAAGAATTGGTTCTCA] [+] EMBL C28601 [GCTACTGATCNNANTNGGNATATATANANCNTGGTGNGNTTTTTTATTNAACNTGCTTTGNTNGGCNGGTNTTCCGGGCGTGTANCANATTATTGGTTGCCGGATCCAGNGAGCTTGTCTTTGCAGATCAGAGCAATAGTGGGAGAGGAATGGCGTCGAGACTGCTGGAGAGCCAAAAGGATTGGAAGGGCTTGTGGAAAATCAATGCGCCGGGAAAGATGAAAATTATTCTCTGGCGTGCTGCTCATGAATGCTTGGCGACTGGGTTTCAACTTCCACGGCGGCATATCCCCTCTACTGATGGCTGTGTTTTTTGCAACAGAGATGACACAGTGGAACATGTCTTCCTGTTCTGCCCCTTTTGTTGCTCAAATCTGGGGAGGAAATCAAAAGAAAGTGTGCTGTCAACTAGGAAGAATTGGTTCTCA] consensusID : consensus_3003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [GCGGNACGNNCNCNANCCATNANAANAANCNTNGGTGNTTNANACTCTNTCCGTTTNTGNTTNCAATATGGTGCNATCAGAAGCTTTCTTTNCAGATCAAAGCAATAGTGGGAGAGGAATGGNGTCGAGACTNCTGGAGAGCCAAAAGNATTGGAAGGGCTTNTGGAAAATNAATNCGCCGGGAAANATGAAAATAATTCTCTGGNGTGCTGCTCATNAATGCTTGGCGACTGGNTTTCAACTTCCACGGCGGCATATCCCCTCTACTGATGGCTGTNTTTTTNGCAACAAAGATGACACAGTGGACATGTCTTCCTGTTCTGCCCTTTGCTGCTCAAATNTGGGAGGAAATCAAAAGAAAGTGTGCTGTCAAACTAGGAG] [+] EMBL AU069348 [GCGGNACGNNCNCNANCCATNANAANAANCNTNGGTGNTTNANACTCTNTCCGTTTNTGNTTNCAATATGGTGCNATCAGAAGCTTTCTTTNCAGATCAAAGCAATAGTGGGAGAGGAATGGNGTCGAGACTNCTGGAGAGCCAAAAGNATTGGAAGGGCTTNTGGAAAATNAATNCGCCGGGAAANATGAAAATAATTCTCTGGNGTGCTGCTCATNAATGCTTGGCGACTGGNTTTCAACTTCCACGGCGGCATATCCCCTCTACTGATGGCTGTNTTTTTNGCAACAAAGATGACACAGTGGACATGTCTTCCTGTTCTGCCCTTTGCTGCTCAAATNTGGGAGGAAATCAAAAGAAAGTGTGCTGTCAAACTAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3003#0 GCTACTGATCNNANTNGGNATATATANANCNTGGTGNGNTTT-TTTATTNAACNTGCTTT 59 consensus_3003#1 ----------------------------GCGGNACGNNCNCNANCCATNANAANAANCNT 32 * ** ** * * * consensus_3003#0 GNTNGGCNGGTNTTCCGGGCGTGTANCANATTATTGGTTGCCGGATCCAGNGAGCTTGTC 119 consensus_3003#1 NGGTGNTTNANACTCTNTCCGTTTNT--GNTTNCAATATGGTGCNATCAGA-AGCTT-TC 88 * ** *** * ** ** * *** ***** ** consensus_3003#0 TTTGCAGATCAGAGCAATAGTGGGAGAGGAATGGCGTCGAGACTGCTGGAGAGCCAAAAG 179 consensus_3003#1 TTTNCAGATCAAAGCAATAGTGGGAGAGGAATGGNGTCGAGACTNCTGGAGAGCCAAAAG 148 *** ******* ********************** ********* *************** consensus_3003#0 GATTGGAAGGGCTTGTGGAAAATCAATGCGCCGGGAAAGATGAAAATTATTCTCTGGCGT 239 consensus_3003#1 NATTGGAAGGGCTTNTGGAAAATNAATNCGCCGGGAAANATGAAAATAATTCTCTGGNGT 208 ************* ******** *** ********** ******** ********* ** consensus_3003#0 GCTGCTCATGAATGCTTGGCGACTGGGTTTCAACTTCCACGGCGGCATATCCCCTCTACT 299 consensus_3003#1 GCTGCTCATNAATGCTTGGCGACTGGNTTTCAACTTCCACGGCGGCATATCCCCTCTACT 268 ********* **************** ********************************* consensus_3003#0 GATGGCTGTGTTTTTTGCAACAGAGATGACACAGTGGAACATGTCTTCCTGTTCTGCCCC 359 consensus_3003#1 GATGGCTGTNTTTTTNGCAACAAAGATGACACAGTGGA-CATGTCTTCCTGTTCTGCCC- 326 ********* ***** ****** *************** ******************** consensus_3003#0 TTTTGTTGCTCAAATCTGGGGAGGAAATCAAAAGAAAGTGTGCTGTCAA-CTAGGAAGAA 418 consensus_3003#1 -TTTGCTGCTCAAATNTGGG-AGGAAATCAAAAGAAAGTGTGCTGTCAAACTAGGAG--- 381 **** ********* **** **************************** ****** consensus_3003#0 TTGGTTCTCA 428 consensus_3003#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||