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Oryza sativa
cluster # 3007 cluster # 3007       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3007#0 length = 1692 sequences # 2  

consensusID : consensus_3007#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1692
fasta sequence
                              [CTCGCCTTCTCTTCCTCACCCCTCCTCTCATTTCAAGAAGAACAAGAGAAAGCTAAGAACATTTTCTAGCTCTCAAGTAGTACTCCTATATAATACCAAGAAGAGAAGCAGTAATAGTCTGGGGAGGCTTGAAGGGGGAGGAGAAGCATCAAATCGAAACAGACCAACAGAATCTGAAAAATTTACTAGTGGTAGAACAAGATTAGTCCTTTCCTCTTCCAAATAATAGTGGATTAGCTACTAGTTTATTAGTTCCTTTCTTCTACCAAGTAGTGGATTAGAGATTAGCTACTAGTTTGCACCTTGAAGAGTGATCTAGGATGGCACCGAGCTTTGATTTTGCGGCATCAATCCTCCTTTGCGCGGAGGACAACACCGCCATTCTTGATCTTGGCGAAGAGAGCGAGGAGATTTCTTGGGTTGTTGGGGTTGATGCTTCTCTAGGGGACTTGTCGATGGATTTCCCCTTGCAATCCGATGATTGCATCGAGGCCCTCCTGGGGAGGGAGGAGCAGCAGCACATCCCCATGGAGGGCTACCTCCAGCGGCTTCTGCTGCAGCCTGATGGGCTCGATTTGGTAGCCGTCAGGAGCGACGCCATTGACTGGATTTGGAAGGTACATGAGCTTTATAAGTTTGGGCCTTTGACTGCAGTCCTGTCGGTGAACTACCTGGACCGGTTCCTCTCCGTGTTCGATCTTCCTGTAAAGATCTTTCTCTGCATTGCATTGTTACTGTATTTCATACAAACTCGATTTTTTTATGCTTCTGAGATAAATGCCAAGTCATGGAGCAATTGCATTCTGAGTTTCAGCAAGAGGAGGCTTGTATGACACAACTCTTAGCAGTAGCTTCCTTGTCTTTGGCTGCAAAAATGGAGGAAACCGTTGTTCCACACCCCTTGGACTTGCAGGTGTGTGATGCAAAATATGTGTTTGAGACTAGGACCATAAAAAGGATGGAGCTTGCAGTGCTTAATGCCCTAAAGTGGAGGATGCAAGCTGTGACTGCTTGCTCATTTATCGATTATTACCTTCACAAGTTCAATGATGATGATACTCCGTCCACATCCGCACTCTCACGCTCAGTTGACCTCATCTTGAGTACATGTAAAGTTGCTGAATTCTTGGTTTTCAGACCATCAGAGATCGCGGCCAGTGTAGCTCTAGTAGCATTGGAGGAACATGAAACTTCCATGTTTGAGAGGGTGGCAACTTGTTACAAAAATTTAAAGAAGGAGAGGGT-ATTACGGTGCTATGAAATGATTCAAGATAAG-ATTATTATGAGAAACATTATGCGCCAATCAGCCGGCTCCGTTTTCTCCATTCCAAAAAGCCCCATAGGTGTATTGGATG-CAGCTGCATGTATAAGCCAACAAAGTGAGGACACTTTTGTTGGATCACCTGCAACAAATTATGAGAGCTCGGCGTCAAGCAAAAGGAGGAGAATTTGCAGATGATTGTTTTCGTTGTACATTTGTAGCCTTCAAGTATGTTGCTCACCCA-TTTGTTTTAATGGACCCAAGAACA-TGGTCATTAGGACAGGTTTTTGTAGAGACGAGCAATCTCTTGTTATTTCGCATTCATGCTTCCATATTCATTTTTGAGAGAACCTTGGAGAATGGATATGCTTTGATGATTCTAAAGAAAATATAAAAACAGAGGAAAAGGAAACCATCTGAGAAAAAAAAAA]

[+] EMBL AK103765             [CTCGCCTTCTCTTCCTCACCCCTCCTCTCATTTCAAGAAGAACAAGAGAAAGCTAAGAACATTTTCTAGCTCTCAAGTAGTACTCCTATATAATACCAAGAAGAGAAGCAGTAATAGTCTGGGGAGGCTTGAAGGGGGAGGAGAAGCATCAAATCGAAACAGACCAACAGAATCTGAAAAATTTACTAGTGGTAGAACAAGATTAGTCCTTTCCTCTTCCAAATAATAGTGGATTAGCTACTAGTTTATTAGTTCCTTTCTTCTACCAAGTAGTGGATTAGAGATTAGCTACTAGTTTGCACCTTGAAGAGTGATCTAGGATGGCACCGAGCTTTGATTTTGCGGCATCAATCCTCCTTTGCGCGGAGGACAACACCGCCATTCTTGATCTTGGCGAAGAGAGCGAGGAGATTTCTTGGGTTGTTGGGGTTGATGCTTCTCTAGGGGACTTGTCGATGGATTTCCCCTTGCAATCCGATGATTGCATCGAGGCCCTCCTGGGGAGGGAGGAGCAGCAGCACATCCCCATGGAGGGCTACCTCCAGCGGCTTCTGCTGCAGCCTGATGGGCTCGATTTGGTAGCCGTCAGGAGCGACGCCATTGACTGGATTTGGAAGGTACATGAGCTTTATAAGTTTGGGCCTTTGACTGCAGTCCTGTCGGTGAACTACCTGGACCGGTTCCTCTCCGTGTTCGATCTTCCTGTAAAGATCTTTCTCTGCATTGCATTGTTACTGTATTTCATACAAACTCGATTTTTTTATGCTTCTGAGATAAATGCCAAGTCATGGAGCAATTGCATTCTGAGTTTCAGCAAGAGGAGGCTTGTATGACACAACTCTTAGCAGTAGCTTCCTTGTCTTTGGCTGCAAAAATGGAGGAAACCGTTGTTCCACACCCCTTGGACTTGCAGGTGTGTGATGCAAAATATGTGTTTGAGACTAGGACCATAAAAAGGATGGAGCTTGCAGTGCTTAATGCCCTAAAGTGGAGGATGCAAGCTGTGACTGCTTGCTCATTTATCGATTATTACCTTCACAAGTTCAATGATGATGATACTCCGTCCACATCCGCACTCTCACGCTCAGTTGACCTCATCTTGAGTACATGTAAAGTTGCTGAATTCTTGGTTTTCAGACCATCAGAGATCGCGGCCAGTGTAGCTCTAGTAGCATTGGAGGAACATGAAACTTCCATGTTTGAGAGGGTGGCAACTTGTTACAAAAATTTAAAGAAGGAGAGGGT ATTACGGTGCTATGAAATGATTCAAGATAAG ATTATTATGAGAAACATTATGCGCCAATCAGCCGGCTCCGTTTTCTCCATTCCAAAAAGCCCCATAGGTGTATTGGATG CAGCTGCATGTATAAGCCAACAAAGTGAGGACACTTTTGTTGGATCACCTGCAACAAATTATGAGAGCTCGGCGTCAAGCAAAAGGAGGAGAATTTGCAGATGATTGTTTTCGTTGTACATTTGTAGCCTTCAAGTATGTTGCTCACCCA TTTGTTTTAATGGACCCAAGAACA TGGTCATTAGGACAGGTTTTTGTAGAGACGAGCAATCTCTTGTTATTTCGCATTCATGCTTCCATATTCATTTTTGAGAGAACCTTGGAGAATGGATATGCTTTGATGATTCTAAAGAAAATATAAAAACA                                ]
[+] EMBL BI805223             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGGTGATTACGGTGCTATGAAATGATTCTAGATAAGTATTATTATGAGTAACATTATGCGCCAATCA CCGGCTCCGTTTTCTCCATTCCCAAAAGCCCCATAGGTGTATTGGATGTCAGCTGCATGTATAAGCCAACCAAGTGAGGACACTTTTGTTGGATCACCTGCTACCAATTATGAGAGCTCGGCGTCAAGC AAAGGAGGAGAATTTGCAGATGATTGTTTTCGTTGTACATTTGTAGCCTTCAAGTATGTTGCTCACCCACTTTGTTTTAATGGACCCCAGAACACTGGTCATTAGGACAGGTTTTTGTAGAGACGAGCCATCTCTTGTTATTTCGCATTCATGCTTCCATATTCATTTTTGAGAGAACCTTGGAGAATGGATATGCTTTGATGATTCTAAAGAAAATATAAAAACCGAGGAAAAGGAAACCATCTGAGAAAAAAAAAA]


>consensus_3007#0 CTCGCCTTCTCTTCCTCACCCCTCCTCTCATTTCAAGAAGAACAAGAGAAAGCTAAGAAC ATTTTCTAGCTCTCAAGTAGTACTCCTATATAATACCAAGAAGAGAAGCAGTAATAGTCT GGGGAGGCTTGAAGGGGGAGGAGAAGCATCAAATCGAAACAGACCAACAGAATCTGAAAA ATTTACTAGTGGTAGAACAAGATTAGTCCTTTCCTCTTCCAAATAATAGTGGATTAGCTA CTAGTTTATTAGTTCCTTTCTTCTACCAAGTAGTGGATTAGAGATTAGCTACTAGTTTGC ACCTTGAAGAGTGATCTAGGATGGCACCGAGCTTTGATTTTGCGGCATCAATCCTCCTTT GCGCGGAGGACAACACCGCCATTCTTGATCTTGGCGAAGAGAGCGAGGAGATTTCTTGGG TTGTTGGGGTTGATGCTTCTCTAGGGGACTTGTCGATGGATTTCCCCTTGCAATCCGATG ATTGCATCGAGGCCCTCCTGGGGAGGGAGGAGCAGCAGCACATCCCCATGGAGGGCTACC TCCAGCGGCTTCTGCTGCAGCCTGATGGGCTCGATTTGGTAGCCGTCAGGAGCGACGCCA TTGACTGGATTTGGAAGGTACATGAGCTTTATAAGTTTGGGCCTTTGACTGCAGTCCTGT CGGTGAACTACCTGGACCGGTTCCTCTCCGTGTTCGATCTTCCTGTAAAGATCTTTCTCT GCATTGCATTGTTACTGTATTTCATACAAACTCGATTTTTTTATGCTTCTGAGATAAATG CCAAGTCATGGAGCAATTGCATTCTGAGTTTCAGCAAGAGGAGGCTTGTATGACACAACT CTTAGCAGTAGCTTCCTTGTCTTTGGCTGCAAAAATGGAGGAAACCGTTGTTCCACACCC CTTGGACTTGCAGGTGTGTGATGCAAAATATGTGTTTGAGACTAGGACCATAAAAAGGAT GGAGCTTGCAGTGCTTAATGCCCTAAAGTGGAGGATGCAAGCTGTGACTGCTTGCTCATT TATCGATTATTACCTTCACAAGTTCAATGATGATGATACTCCGTCCACATCCGCACTCTC ACGCTCAGTTGACCTCATCTTGAGTACATGTAAAGTTGCTGAATTCTTGGTTTTCAGACC ATCAGAGATCGCGGCCAGTGTAGCTCTAGTAGCATTGGAGGAACATGAAACTTCCATGTT TGAGAGGGTGGCAACTTGTTACAAAAATTTAAAGAAGGAGAGGGTATTACGGTGCTATGA AATGATTCAAGATAAGATTATTATGAGAAACATTATGCGCCAATCAGCCGGCTCCGTTTT CTCCATTCCAAAAAGCCCCATAGGTGTATTGGATGCAGCTGCATGTATAAGCCAACAAAG TGAGGACACTTTTGTTGGATCACCTGCAACAAATTATGAGAGCTCGGCGTCAAGCAAAAG GAGGAGAATTTGCAGATGATTGTTTTCGTTGTACATTTGTAGCCTTCAAGTATGTTGCTC ACCCATTTGTTTTAATGGACCCAAGAACATGGTCATTAGGACAGGTTTTTGTAGAGACGA GCAATCTCTTGTTATTTCGCATTCATGCTTCCATATTCATTTTTGAGAGAACCTTGGAGA ATGGATATGCTTTGATGATTCTAAAGAAAATATAAAAACAGAGGAAAAGGAAACCATCTG AGAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)