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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_302#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1454 fasta sequence
[ACTAAACAGCCATGCTGCTTCTGTACATCTTCAGTTTGGTGGTGCATAATTAAATACAGATACACACTATTAAAGGTTGGTGAAATCTTCAATGATTTATCTCCCTCCATTGCCTATCTAACAAATACCTACCATGGCCACTGAAAGGCTGCTCAATTACATGCCCCCCGCCATTATGTTGGAATATTCTAAATGGCATACAGTGGAACCATAGAGGACTCGGTGGCTTAACTTGATCTTCCTGCGATTTTGAAGTAGCCATAGAGCTTGCGATGAACATGCAAATACTTAACTGGCATCACTTTAACGACGATAAGTTCAACAAGCTGAAATTGCTTTATCAGAGTTGATCCAATCCTCTCCGGAGGAGGCTCTACATGACTACATCCTTGGAGTAAATCTCTGGTCAAGATCACTTTACTTGACCATAAGAAAAGAATGTCAAACTTTTCGTTCCAGCTTGCTTTATTGAAGTTATGCAGGTCCTTGCACCTGATCCACCTTTTAGTGATGAAATATTTAAGGAGAGATGTTTAGGCTCTTTATCAGCACATTTGCACACCTTGCTGAAACAAACAGTCCATATCTTCCAAGAAGATCTTGCTATTGGAAAATGTGCTGCACTCAGAGTAAGAGTTTTTGCACGTGATGCAGCAAAAGCCTGTTACATGGCCGTGACATCAGGAAATGAAAAAAAAGATATTCTTAGTAAGGCTGCTTCTTTTTATCTGTTCTTTTGTTCAGAGTTCTATATTGGCATCTTCATGCTGAAGTTTTGATTTATTTGGCAGCATCACTTGAAGAGAGGTTATTGGATTTTGATGTCAAAGTTAGAATGCAAGCTGGTTTTGCATCCTGCAATTTAGGGCCAAATCAAATCTAAGATCAGTTCCTTCTGAGCTGATATTGCAGGCAGCAGAGAAGCCACAAACTGTTGTTATTTCTCGCTACTGCAGGGTACAAAACCTAAGCCGTTGCGGTCAACTAACTCCCGCATCGGGGAAGAAGATGGCGAGGGAGTGAATGGGGGAGAAGAAGGGCCTACCCGGGAAGCTCCGCCAACCACCGACTACCCGATCTGCCACCAACGGCCACCGCCGGTCCTGCTACTCGGCCACACCGAGCATTGCCGTGTCGATCCCCACCTCTGCCGCCTCGATCCGCCATTGCCACGTTGATCCCCACCTCCGCCCGCCTTCTTAGCGGTGTCGCCGAAGAGAGAGAGAGGGGAGAGGTGGCGTCGCCGGAGAAAGGGAAGGTGGCGTCACCGGAGAAAGGGAAGGGGAGGCGGAGGAAGACGGGGAGGAGGGACGGGGTGAGCCTTTATATATGTTTGTGATTTTTGGGGGGCGTACTACAAATATTGGACTTATATATGAATAGAAAATCTGAGGATTTAAATGGAAAATGTAATCGACTGACAGGTGCTGAAATGCAAAAATAAGATAGAGCTG]
[+] EMBL AK111426 [ACTAAACAGCCATGCTGCTTCTGTACATCTTCAGTTTGGTGGTGCATAATTAAATACAGATACACACTATTAAAGGTTGGTGAAATCTTCAATGATTTATCTCCCTCCATTGCCTATCTAACAAATACCTACCATGGCCACTGAAAGGCTGCTCAATTACATGCCCCCCGCCATTATGTTGGAATATTCTAAATGGCATACAGTGGAACCATAGAGGACTCGGTGGCTTAACTTGATCTTCCTGCGATTTTGAAGTAGCCATAGAGCTTGCGATGAACATGCAAATACTTAACTGGCATCACTTTAACGACGATAAGTTCAACAAGCTGAAATTGCTTTATCAGAGTTGATCCAATCCTCTCCGGAGGAGGCTCTACATGACTACATCCTTGGAGTAAATCTCTGGTCAAGATCACTTTACTTGACCATAAGAAAAGAATGTCAAACTTTTCGTTCCAGCTTGCTTTATTGAAGTTATGCAGGTCCTTGCACCTGATCCACCTTTTAGTGATGAAATATTTAAGGAGAGATGTTTAGGCTCTTTATCAGCACATTTGCACACCTTGCTGAAACAAACAGTCCATATCTTCCAAGAAGATCTTGCTATTGGAAAATGTGCTGCACTCAGAGTAAGAGTTTTTGCACGTGATGCAGCAAAAGCCTGTTACATGGCCGTGACATCAGGAAATGAAAAAAAAGATATTCTTAGTAAGGCTGCTTCTTTTTATCTGTTCTTTTGTTCAGAGTTCTATATTGGCATCTTCATGCTGAAGTTTTGATTTATTTGGCAGCATCACTTGAAGAGAGGTTATTGGATTTTGATGTCAAAGTTAGAATGCAAGCTGGTTTTGCATCCTGCAATTTAGGGCCAAATCAAATCTAAGATCAGTTCCTTCTGAGCTGATATTGCAGGCAGCAGAGAAGCCACAAACTGTTGTTATTTCTCGCTACTGCAGGGTACAAAACCTAAGCCGTTGCGGTCAACTAACTCCCGCATCGGGGAAGAAGATGGCGAGGGAGTGAATGGGGGAGAAGAAGGGCCTACCCGGGAAGCTCCGCCAACCACCGACTACCCGATCTGCCACCAACGGCCACCGCCGGTCCTGCTACTCGGCCACACCGAGCATTGCCGTGTCGATCCCCACCTCTGCCGCCTCGATCCGCCATTGCCACGTTGATCCCCACCTCCGCCCGCCTTCTTAGCGGTGTCGCCGAAGAGAGAGAGAGGGGAGAGGTGGCGTCGCCGGAGAAAGGGAAGGTGGCGTCACCGGAGAAAGGGAAGGGGAGGCGGAGGAAGACGGGGAGGAGGGACGGGGTGAGCCTTTATATATGTTTGTGATTTTTGGGGGGCGTACTACAAATATTGGACTTATATATGAATAGAAAATCTGAGGATTTAAATGGAAAATGTAATCGACTGACAGGTGCTGAAATGCAAAAATAAGATAGAGCTG]
consensusID : consensus_302#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 804 fasta sequence
[ATCTGCTTGCATGCTCAGCTTCATAGTCAATTTTCAACTAAACAGCCATGCTGCTTCTGTACATCTTCAGTTTGGTTGTGCATAATTAAATACAGATACACACTATTAAAGCAAGCTGAAATTGCTTTATCAGAGTTGATCCAATCCTCTCCGGAGGAGGCTCTACATGACTACATCCTTGGAGTAAATCTCTGGTCAAGATCACTTTACTTGACCATAAGAAAAGAATGTCAAACTTTTCGTTCCAGCTTGCTTTATTGAAGTTATGCAGGTCCTTGCACCTGATCCACCTTTTAGTGATGAAATATTTAAGGAGAGATGTTTAGGCTCTTTATCAGCACATTTGCAGACCTTGCTGAAACAAACAGTCCATATCTTCCAAGAAGATCTTGCTATTGGAAAATGTGCTGCACTCAGAGTAAGAGTTTTTGCACGTGATGCAGCAAAAGCCTGTTACATGGCCGTGACATCAGGAAATGAAAAAAAAGATATTCTTACATCACTTGAAGAGAGGTTATTGGATTTTGATGTCAAAGTTAGAATGCAAGCTGGTTTTGCATCCTGCAATTTAAGGCCAAATCAAATCTAAGATCAGTTCCTTCTGAGCTGATATTGCAGGCAGCAGAGAAGCCACAAACTGGTGTTATTTCTCGCTACTGCAGGGTACAAAACCTTAGCCGTTGCGGTCAACTAAACTCCGCATCGGGGAAAAAGATTGCCNAGNNNNNNNNTTAGGNNNNAANAAANNNCTCACCNGGGAAGTTNCNNCAACCAACCGACTACCCCGAACTTGCAACCAAGGGC]
[+] EMBL BE039949 [ATCTGCTTGCATGCTCAGCTTCATAGTCAATTTTCAACTAAACAGCCATGCTGCTTCTGTACATCTTCAGTTTGGTTGTGCATAATTAAATACAGATACACACTATTAAAGCAAGCTGAAATTGCTTTATCAGAGTTGATCCAATCCTCTCCGGAGGAGGCTCTACATGACTACATCCTTGGAGTAAATCTCTGGTCAAGATCACTTTACTTGACCATAAGAAAAGAATGTCAAACTTTTCGTTCCAGCTTGCTTTATTGAAGTTATGCAGGTCCTTGCACCTGATCCACCTTTTAGTGATGAAATATTTAAGGAGAGATGTTTAGGCTCTTTATCAGCACATTTGCAGACCTTGCTGAAACAAACAGTCCATATCTTCCAAGAAGATCTTGCTATTGGAAAATGTGCTGCACTCAGAGTAAGAGTTTTTGCACGTGATGCAGCAAAAGCCTGTTACATGGCCGTGACATCAGGAAATGAAAAAAAAGATATTCTTACATCACTTGAAGAGAGGTTATTGGATTTTGATGTCAAAGTTAGAATGCAAGCTGGTTTTGCATCCTGCAATTTAAGGCCAAATCAAATCTAAGATCAGTTCCTTCTGAGCTGATATTGCAGGCAGCAGAGAAGCCACAAACTGGTGTTATTTCTCGCTACTGCAGGGTACAAAACCTTAGCCGTTGCGGTCAACTAAACTCCGCATCGGGGAAAAAGATTGCCNAGNNNNNNNNTTAGGNNNNAANAAANNNCTCACCNGGGAAGTTNCNNCAACCAACCGACTACCCCGAACTTGCAACCAAGGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_302#0 ACTAAACAGCCATGCTGCTTCTGTACATCTTCAGTTTGGTGGTGCATAATTAAATACAGA 60
consensus_302#1 ------------------------------------------------------------
consensus_302#0 TACACACTATTAAAGGTTGGTGAAATCTTCAATGATTTATCTCCCTCCATTGCCTATCTA 120
consensus_302#1 ------------------------------------------------------------
consensus_302#0 ACAAATACCTACCATGGCCACTGAAAGGCTGCTCAATTACATGCCCCCCGCCATTATGTT 180
consensus_302#1 ------------------------------------------------------------
consensus_302#0 GGAATATTCTAAATGGCATACAGTGGAACCATAGAGGACTCGGTGGCTTAACTTGATCTT 240
consensus_302#1 ---------------------------------ATCTGCTTGCATGCTCAGCTTCATAGT 27
** * *** * *** ** *
consensus_302#0 CCTGCGATTTTGAAGTAGCCATAGAGCTTGCGATGAACATGCAAATACTTAACTGGCATC 300
consensus_302#1 CAATTTTCAACTAAACAGCCATGCTGCTTCTGTACATCTTCAGTTTGGTTGTGCATAATT 87
* ** ****** **** * * * * * ** **
consensus_302#0 ACTT-TAACGACG-ATAAGTTCAACAAGCTGAAATTGCTTTATCAGAGTTGATCCAATCC 358
consensus_302#1 AAATACAGATACACACTATTAAAGCAAGCTGAAATTGCTTTATCAGAGTTGATCCAATCC 147
* * * ** * * * * ************************************
consensus_302#0 TCTCCGGAGGAGGCTCTACATGACTACATCCTTGGAGTAAATCTCTGGTCAAGATCACTT 418
consensus_302#1 TCTCCGGAGGAGGCTCTACATGACTACATCCTTGGAGTAAATCTCTGGTCAAGATCACTT 207
************************************************************
consensus_302#0 TACTTGACCATAAGAAAAGAATGTCAAACTTTTCGTTCCAGCTTGCTTTATTGAAGTTAT 478
consensus_302#1 TACTTGACCATAAGAAAAGAATGTCAAACTTTTCGTTCCAGCTTGCTTTATTGAAGTTAT 267
************************************************************
consensus_302#0 GCAGGTCCTTGCACCTGATCCACCTTTTAGTGATGAAATATTTAAGGAGAGATGTTTAGG 538
consensus_302#1 GCAGGTCCTTGCACCTGATCCACCTTTTAGTGATGAAATATTTAAGGAGAGATGTTTAGG 327
************************************************************
consensus_302#0 CTCTTTATCAGCACATTTGCACACCTTGCTGAAACAAACAGTCCATATCTTCCAAGAAGA 598
consensus_302#1 CTCTTTATCAGCACATTTGCAGACCTTGCTGAAACAAACAGTCCATATCTTCCAAGAAGA 387
********************* **************************************
consensus_302#0 TCTTGCTATTGGAAAATGTGCTGCACTCAGAGTAAGAGTTTTTGCACGTGATGCAGCAAA 658
consensus_302#1 TCTTGCTATTGGAAAATGTGCTGCACTCAGAGTAAGAGTTTTTGCACGTGATGCAGCAAA 447
************************************************************
consensus_302#0 AGCCTGTTACATGGCCGTGACATCAGGAAATGAAAAAAAAGATATTCTTAGTAAGGCTGC 718
consensus_302#1 AGCCTGTTACATGGCCGTGACATCAGGAAATGAAAAAAAAGATATTCTTA---------- 497
**************************************************
consensus_302#0 TTCTTTTTATCTGTTCTTTTGTTCAGAGTTCTATATTGGCATCTTCATGCTGAAGTTTTG 778
consensus_302#1 ------------------------------------------------------------
consensus_302#0 ATTTATTTGGCAGCATCACTTGAAGAGAGGTTATTGGATTTTGATGTCAAAGTTAGAATG 838
consensus_302#1 -------------CATCACTTGAAGAGAGGTTATTGGATTTTGATGTCAAAGTTAGAATG 544
***********************************************
consensus_302#0 CAAGCTGGTTTTGCATCCTGCAATTTAGGGCCAAATCAAATCTAAGATCAGTTCCTTCTG 898
consensus_302#1 CAAGCTGGTTTTGCATCCTGCAATTTAAGGCCAAATCAAATCTAAGATCAGTTCCTTCTG 604
*************************** ********************************
consensus_302#0 AGCTGATATTGCAGGCAGCAGAGAAGCCACAAACTGTTGTTATTTCTCGCTACTGCAGGG 958
consensus_302#1 AGCTGATATTGCAGGCAGCAGAGAAGCCACAAACTGGTGTTATTTCTCGCTACTGCAGGG 664
************************************ ***********************
consensus_302#0 TACAAAACCTAAGCCGTTGCGGTCAACTAACTCCCGCATCGGGGAAGAAGATGGCGAGGG 1018
consensus_302#1 TACAAAACCTTAGCCGTTGCGGTCAACTAAACTCCGCATCGGGGAAAAAGATTGCCNAGN 724
********** ******************* ************* ***** ** *
consensus_302#0 AGTGAAT---GGGGGAGAAGAAGGGCCTACCCGGGAAGCTCCGCCAACCA-CCGACTACC 1074
consensus_302#1 NNNNNNNTTAGGNNNNAANAAANNNCTCACCNGGGAAGTTNCNNCAACCAACCGACTACC 784
** * ** * *** ****** * * ****** *********
consensus_302#0 C--GATCTGCCACCAACGGCCACCGCCGGTCCTGCTACTCGGCCACACCGAGCATTGCCG 1132
consensus_302#1 CCGAACTTGCAACCAAGGGC---------------------------------------- 804
* * *** ***** ***
consensus_302#0 TGTCGATCCCCACCTCTGCCGCCTCGATCCGCCATTGCCACGTTGATCCCCACCTCCGCC 1192
consensus_302#1 ------------------------------------------------------------
consensus_302#0 CGCCTTCTTAGCGGTGTCGCCGAAGAGAGAGAGAGGGGAGAGGTGGCGTCGCCGGAGAAA 1252
consensus_302#1 ------------------------------------------------------------
consensus_302#0 GGGAAGGTGGCGTCACCGGAGAAAGGGAAGGGGAGGCGGAGGAAGACGGGGAGGAGGGAC 1312
consensus_302#1 ------------------------------------------------------------
consensus_302#0 GGGGTGAGCCTTTATATATGTTTGTGATTTTTGGGGGGCGTACTACAAATATTGGACTTA 1372
consensus_302#1 ------------------------------------------------------------
consensus_302#0 TATATGAATAGAAAATCTGAGGATTTAAATGGAAAATGTAATCGACTGACAGGTGCTGAA 1432
consensus_302#1 ------------------------------------------------------------
consensus_302#0 ATGCAAAAATAAGATAGAGCTG 1454
consensus_302#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||