These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3035#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 892 fasta sequence [GCGGCATACTGCTCGCGCCGCCTTCCTCTCGCTCCCGCGCCGGCGCTCACCCTCCGTCGCGCGAGAGGGCAAGGCAACGCCGCTGCTCAGTGCTGCCTTCGTTCTCTCTCCCCTTTCCTCCCGTGTGAGATCCTCCATGCCGATGTGGATTCCTTGCTGTCCATCGACGGTTTTCCGAGCTTGGGGGGAGGAGATGAAGAACAACTCCGTTTCGGATCCGGCGTCCGTGTCCGATTCTCTTCTCGATCGGATCCCACACCCACACACCACACCCGCCGCCACACAGCGAGAGGAGCAGAGGAATTAAGCAGAGTGTTGGAAAGGAACAAGGAATAATACGGCGGCCCGGAGATGAAGTCCGGCAAGCCGCCGACGGCGGGGGTCCGCGTATTCGGCGGGCTACGCTACGCTCCGCTGGATGGCATGGTCGTCGACAACCCTCTACTGGCCGCCCTCATCCGAGCTGTTTACACCTTGTACATGGCTACGACGGTGCTTCTCTACATTTTTGGCATGGTTACTGCTCTCAAGGAATACGAATTGTTAGTGCCACTGTCCATAATTGTAGTCATGCAGCCCTTCTTCATATTGATGTGGATTGCAGCACCATTCCTTAGGACTGTAGCAATTGTGAAATATGCGATGGGGCTCCCTGATGGTAACAACGTCAACAGAATTCCAACAGGAAGGATGTCAGCCCTAGCCTAAACAAAGTGTGCCTAAGCAGGGTTCTTCAAGTTTATCATAATTGTGCCCTCTTTAGAAATAGGCCACTTCTAGTTGCCGTCTTCTTTAGAAGACTTTTAGATTTAGGTGTGTATTCTATTAGAATATATCTTAAAGCAACTTTGTATGTTTCTATTAGTTATATGATGCTTCATGGTTCTTTTGT] [+] EMBL AK107827 [GCGGCATACTGCTCGCGCCGCCTTCCTCTCGCTCCCGCGCCGGCGCTCACCCTCCGTCGCGCGAGAGGGCAAGGCAACGCCGCTGCTCAGTGCTGCCTTCGTTCTCTCTCCCCTTTCCTCCCGTGTGAGATCCTCCATGCCGATGTGGATTCCTTGCTGTCCATCGACGGTTTTCCGAGCTTGGGGGGAGGAGATGAAGAACAACTCCGTTTCGGATCCGGCGTCCGTGTCCGATTCTCTTCTCGATCGGATCCCACACCCACACACCACACCCGCCGCCACACAGCGAGAGGAGCAGAGGAATTAAGCAGAGTGTTGGAAAGGAACAAGGAATAATACGGCGGCCCGGAGATGAAGTCCGGCAAGCCGCCGACGGCGGGGGTCCGCGTATTCGGCGGGCTACGCTACGCTCCGCTGGATGGCATGGTCGTCGACAACCCTCTACTGGCCGCCCTCATCCGAGCTGTTTACACCTTGTACATGGCTACGACGGTGCTTCTCTACATTTTTGGCATGGTTACTGCTCTCAAGGAATACGAATTGTTAGTGCCACTGTCCATAATTGTAGTCATGCAGCCCTTCTTCATATTGATGTGGATTGCAGCACCATTCCTTAGGACTGTAGCAATTGTGAAATATGCGATGGGGCTCCCTGATGGTAACAACGTCAACAGAATTCCAACAGGAAGGATGTCAGCCCTAGCCTAAACAAAGTGTGCCTAAGCAGGGTTCTTCAAGTTTATCATAATTGTGCCCTCTTTAGAAATAGGCCACTTCTAGTTGCCGTCTTCTTTAGAAGACTTTTAGATTTAGGTGTGTATTCTATTAGAATATATCTTAAAGCAACTTTGTATGTTTCTATTAGTTATATGATGCTTCATGGTTCTTTTGT] consensusID : consensus_3035#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [AGGACGCGACAACTGGGAGAGGAAGCAGNGNGNTGGCNNGANACACGGGATAAGCCGGCGGCCGGAGATGAANNCCGNCAAGCCGATCTGCGAGAAGGNGAAGCCCGCAGTAGCNGTCCGCATATTCGGCGGNCTACGNTACGCTCCGCCGGATGGNCTGGTCGTCNACACTCCTCTACTGGCTGCCTTCATCCGAGCTGTTTACACCTTATACATGGCTACGACAGTGTTTCTCTACATTTTTGNCATGGGTACTGCTATCAAGGAATACGAAATGTTGGTGGCACTGTCCATAATTGTAGTCATGCAGCCCTTCTTCATATTGATGNGGATTGCAGCACCATTCCTTANGACTGNAGCAATTGNGAAANATGCGANGGGACTCCCTGATAGTAATAACGTCAACAGAATTACAACAGGAAGGATGTCAGCCCTAGCCTGAACAAAGTATGCCTAAGAAGGGTTGCTCAAGTTTATCATAATTGTGCCCTCTTTAGAAATAGGGCACTTTAAGNTGCTGTCTTCTTTAGAAGACCTTTTAGATTCAGATGTGTATTTCTTAGAACATATGTTAACAGTGGCGTAGCTAGCTTATAGCTCCATATGGGCACAGGACTACCCTAGATTTTAGCATAGAGACCTTAATCCCTACTATCAAAATTCATGGATCATTTGCAAAACAAACTATACATACTTATCATGC] [+] EMBL CA765024 [AGGACGCGACAACTGGGAGAGGAAGCAGNGNGNTGGCNNGANACACGGGATAAGCCGGCGGCCGGAGATGAANNCCGNCAAGCCGATCTGCGAGAAGGNGAAGCCCGCAGTAGCNGTCCGCATATTCGGCGGNCTACGNTACGCTCCGCCGGATGGNCTGGTCGTCNACACTCCTCTACTGGCTGCCTTCATCCGAGCTGTTTACACCTTATACATGGCTACGACAGTGTTTCTCTACATTTTTGNCATGGGTACTGCTATCAAGGAATACGAAATGTTGGTGGCACTGTCCATAATTGTAGTCATGCAGCCCTTCTTCATATTGATGNGGATTGCAGCACCATTCCTTANGACTGNAGCAATTGNGAAANATGCGANGGGACTCCCTGATAGTAATAACGTCAACAGAATTACAACAGGAAGGATGTCAGCCCTAGCCTGAACAAAGTATGCCTAAGAAGGGTTGCTCAAGTTTATCATAATTGTGCCCTCTTTAGAAATAGGGCACTTTAAGNTGCTGTCTTCTTTAGAAGACCTTTTAGATTCAGATGTGTATTTCTTAGAACATATGTTAACAGTGGCGTAGCTAGCTTATAGCTCCATATGGGCACAGGACTACCCTAGATTTTAGCATAGAGACCTTAATCCCTACTATCAAAATTCATGGATCATTTGCAAAACAAACTATACATACTTATCATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3035#0 GCGGCATACTGCTCGCGCCGCCTTCCTCTCGCTCCCGCGCCGGCGCTCACCCTCCGTCGC 60 consensus_3035#1 ------------------------------------------------------------ consensus_3035#0 GCGAGAGGGCAAGGCAACGCCGCTGCTCAGTGCTGCCTTCGTTCTCTCTCCCCTTTCCTC 120 consensus_3035#1 ------------------------------------------------------------ consensus_3035#0 CCGTGTGAGATCCTCCATGCCGATGTGGATTCCTTGCTGTCCATCGACGGTTTTCCGAGC 180 consensus_3035#1 ------------------------------------------------------------ consensus_3035#0 TTGGGGGGAGGAGATGAAGAACAACTCCGTTTCGGATCCGGCGTCCGTGTCCGATTCTCT 240 consensus_3035#1 ------------------------------------------------------------ consensus_3035#0 TCTCGATCGGATCCCACACCCACACACCACACCCGCCGCCACACAGCGAGAGGAGCAGAG 300 consensus_3035#1 ------------------------------------------AGGACGCGAC-AACTGGG 17 * ** ** * * * * consensus_3035#0 GAATTAAGCAGAGTGTTGGAAAGGAACAAGGAATAATACGGCGGCCCGGAGATGAAGTCC 360 consensus_3035#1 AGAGGAAGCAGNGNGNTGGCNNGANACACGGGATAAGCCGGCGGCC-GGAGATGAANNCC 76 * ****** * * *** * *** ** **** ******** ********* ** consensus_3035#0 GGCAAGCCG------------------CCGACGGCGGGGGTCCGCGTATTCGGCGGGCTA 402 consensus_3035#1 GNCAAGCCGATCTGCGAGAAGGNGAAGCCCGCAGTAGCNGTCCGCATATTCGGCGGNCTA 136 * ******* ** * * * ****** ********** *** consensus_3035#0 CGCTACGCTCCGCTGGATGGCATGGTCGTCGACAACCCTCTACTGGCCGCCCTCATCCGA 462 consensus_3035#1 CGNTACGCTCCGCCGGATGGNCTGGTCGTCNACACTCCTCTACTGGCTGCCTTCATCCGA 196 ** ********** ****** ******** *** *********** *** ******** consensus_3035#0 GCTGTTTACACCTTGTACATGGCTACGACGGTGCTTCTCTACATTTTTGGCATGGTTACT 522 consensus_3035#1 GCTGTTTACACCTTATACATGGCTACGACAGTGTTTCTCTACATTTTTGNCATGGGTACT 256 ************** ************** *** *************** ***** **** consensus_3035#0 GCTCTCAAGGAATACGAATTGTTAGTGCCACTGTCCATAATTGTAGTCATGCAGCCCTTC 582 consensus_3035#1 GCTATCAAGGAATACGAAATGTTGGTGGCACTGTCCATAATTGTAGTCATGCAGCCCTTC 316 *** ************** **** *** ******************************** consensus_3035#0 TTCATATTGATGTGGATTGCAGCACCATTCCTTAGGACTGTAGCAATTGTGAAATATGCG 642 consensus_3035#1 TTCATATTGATGNGGATTGCAGCACCATTCCTTANGACTGNAGCAATTGNGAAANATGCG 376 ************ ********************* ***** ******** **** ***** consensus_3035#0 ATGGGGCTCCCTGATGGTAACAACGTCAACAGAATTCCAACAGGAAGGATGTCAGCCCTA 702 consensus_3035#1 ANGGGACTCCCTGATAGTAATAACGTCAACAGAATTACAACAGGAAGGATGTCAGCCCTA 436 * *** ********* **** *************** *********************** consensus_3035#0 GCCTAAACAAAGTGTGCCTAAGCAGGGTTCTTCAAGTTTATCATAATTGTGCCCTCTTTA 762 consensus_3035#1 GCCTGAACAAAGTATGCCTAAGAAGGGTTGCTCAAGTTTATCATAATTGTGCCCTCTTTA 496 **** ******** ******** ****** ***************************** consensus_3035#0 GAAATAGGCCACTTCTAGTTGCCGTCTTCTTTAGAAGAC-TTTTAGATTTAGGTGTGTAT 821 consensus_3035#1 GAAATAGGGCACTTTAAGNTGCTGTCTTCTTTAGAAGACCTTTTAGATTCAGATGTGTAT 556 ******** ***** ** *** **************** ********* ** ******* consensus_3035#0 TCTATTAGAATATATCTTAA-AGCAACTTTG------TATGTTTCTAT-TAGTTATATGA 873 consensus_3035#1 T-TCTTAGAACATATGTTAACAGTGGCGTAGCTAGCTTATAGCTCCATATGGGCACAGGA 615 * * ****** **** **** ** * * * *** ** ** * * * * ** consensus_3035#0 TGCTTCATGGTTCTTTTGT----------------------------------------- 892 consensus_3035#1 CTACCCTAGATTTTAGCATAGAGACCTTAATCCCTACTATCAAAATTCATGGATCATTTG 675 * * ** * * consensus_3035#0 ---------------------------- consensus_3035#1 CAAAACAAACTATACATACTTATCATGC 703 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||