These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1925 fasta sequence [AGACAGGCAGCAGCTGACGCGCGCGCGGGGGCGAGGGCAGGAACCCGTCGCGATTGGGCGGACGACGAACCGGTCGCGCGCGGGCGCGTTCGGGAATCGTGGTGGATCTGACGCCACCACCGCCGCCGCCGCCGCCGCTCGGTTGCTCCTCTCCTCGCCGCGCCGTCGCGTGCGTCGCCGTCGCCTCCTTGCCCCTAGCGGGCGGCCGGGCAATTCCCCGCGCGCCTGCTCGATCTGCCTCGGTGGTCAATGCGGGCGAGGAGATGAGCGGCGCCGAGGAGGAGGAGGAGGAGGAGGAGGTGTCCTATGAGGCGCGGGACCGCGTGCTCTCCTCCTCCTCCTGCTCCTCCACCTCGGCCTCGGACGACGACGACCACCCGCGGCGAGGTCGGGATGCGGCGGCTGCTGCTGCTGCGGCGGCGGCGGCGGCGCTCGACGTGTGGACGTCGGAGCCAGCGCCCGTGCAGGAACGACGCCGGAGGCTTCTCCAGATGATGGGGCTCTCCGGTGACCCCTCTCTGGCGCGCCTCGAGATGGGTCGATCGGCCTCCTACGACGGGCCCATCCGGCCGGAGACGGTGTCGCCCATCTCCCGATCCAGATCGGATGGCAGCGTGCCGGCCTCCGCCACCAAGCCCCCGCTCGCGGCCCGGTCGCGCCAAACATCGTCCGACTCCTCCGAGGCCACGCCAGGGGGAGATGACGCGGACCCCAGGTGCCTAATCCGAAACCTCGACGACGGCAGCGAGTTCGTGGTGAAGGAGGAGTCCGCGCTCCGCGAGGTGGGCACGGGGAGGCAGCTCACCATGGAGGAGTTCGACCTCTGCGTCGGTCGCTCCCCCATCGTCCAGGAGCTCATGCGCCGCCAGAACGTGGCAAGCTCCGGTTCGAGCAACGGAGCGTCCGCTCTCATCCAGAGGTCCAGCTCTGATTCAAGCAACGGCGCGACGCGCCACAGGCGGCGCGGCAGCTGGCTCCGGAGCATCCGCAACGTCGCTGGCTCCATGGTGGTCGGCTCCCGCGACCGCCGAAGCAGCGACGAGAAGGACACCTCCTCGGAAAAGGGAGGGCGTCGGTCCAGCTCAGCCACAGACGACAGCCAGGAAAGTGCCAGCGCCGTGCGCCGTGGCCCGGAGCGTGTCAAGGTACGGCAGTACGGGAAGACATGCAAGGAGCTCAGTGGGCTGTTCATGAACCAGGATATACAGGCGCACAACGGGTCCATCTGGAGCATAAAGTTTAGTCACGACGGGCGGTACCTCGCGAGTGCTGGGGAGGATTGCGTGATCCATGTCTGGGAGGTGTCGGAGCTTGAGAGGAAACGGGAGGGAAATGGGGTGTGCAATCAACTTGTTGCCGTCGTGTGCAATGGTTCGCCGGAGCCGATATTGGCATTGGCAAGTGTTGATGGAAGCTGTTGGGAGAAGAAGCATCGGGCTAGAATCTTGGAAACTCGGAAGTCTGCGAGCTCTGACCGGTTGATGTTTCCAGAGCATGTGTTCGCACTATCAGAAAAACCGGTCAAAACTTTTGAGGGGCATTCGGAGGATGTGCTTGATCTCTGCTGGTCTAAATCTCAGTGACATGCATCCAATTCAACCCTGTTGATGATAGATACTTCATTAGTGGTTCTCTGGATGAAAAGGTTCGCATATGGAGCATTCCGGGACGTGAAATTGTTGATTGGAATGATCTGCATGAAATGGTCACTGCTGCTTGCTATACACCTGATGGACAGAGAGCATTAGTCGGTTCCCACAAGGGCAGCTGTCATATTTATGATACATCTGATAATAAGCTTCTCCAAAAGAAACAGATTGACTTGCAAAATAAGAAAAGGAAGTCCAATCAGAAGAAAATCACAGGGTTTCAGTTTCTCCCAGGAAGTTCTTCAAAGGTGCTCATCACATCTGCAGATTCACGAA] [+] EMBL AK099627 [AGACAGGCAGCAGCTGACGCGCGCGCGGGGGCGAGGGCAGGAACCCGTCGCGATTGGGCGGACGACGAACCGGTCGCGCGCGGGCGCGTTCGGGAATCGTGGTGGATCTGACGCCACCACCGCCGCCGCCGCCGCCGCTCGGTTGCTCCTCTCCTCGCCGCGCCGTCGCGTGCGTCGCCGTCGCCTCCTTGCCCCTAGCGGGCGGCCGGGCAATTCCCCGCGCGCCTGCTCGATCTGCCTCGGTGGTCAATGCGGGCGAGGAGATGAGCGGCGCCGAGGAGGAGGAGGAGGAGGAGGAGGTGTCCTATGAGGCGCGGGACCGCGTGCTCTCCTCCTCCTCCTGCTCCTCCACCTCGGCCTCGGACGACGACGACCACCCGCGGCGAGGTCGGGATGCGGCGGCTGCTGCTGCTGCGGCGGCGGCGGCGGCGCTCGACGTGTGGACGTCGGAGCCAGCGCCCGTGCAGGAACGACGCCGGAGGCTTCTCCAGATGATGGGGCTCTCCGGTGACCCCTCTCTGGCGCGCCTCGAGATGGGTCGATCGGCCTCCTACGACGGGCCCATCCGGCCGGAGACGGTGTCGCCCATCTCCCGATCCAGATCGGATGGCAGCGTGCCGGCCTCCGCCACCAAGCCCCCGCTCGCGGCCCGGTCGCGCCAAACATCGTCCGACTCCTCCGAGGCCACGCCAGGGGGAGATGACGCGGACCCCAGGTGCCTAATCCGAAACCTCGACGACGGCAGCGAGTTCGTGGTGAAGGAGGAGTCCGCGCTCCGCGAGGTGGGCACGGGGAGGCAGCTCACCATGGAGGAGTTCGACCTCTGCGTCGGTCGCTCCCCCATCGTCCAGGAGCTCATGCGCCGCCAGAACGTGGCAAGCTCCGGTTCGAGCAACGGAGCGTCCGCTCTCATCCAGAGGTCCAGCTCTGATTCAAGCAACGGCGCGACGCGCCACAGGCGGCGCGGCAGCTGGCTCCGGAGCATCCGCAACGTCGCTGGCTCCATGGTGGTCGGCTCCCGCGACCGCCGAAGCAGCGACGAGAAGGACACCTCCTCGGAAAAGGGAGGGCGTCGGTCCAGCTCAGCCACAGACGACAGCCAGGAAAGTGCCAGCGCCGTGCGCCGTGGCCCGGAGCGTGTCAAGGTACGGCAGTACGGGAAGACATGCAAGGAGCTCAGTGGGCTGTTCATGAACCAGGATATACAGGCGCACAACGGGTCCATCTGGAGCATAAAGTTTAGTCACGACGGGCGGTACCTCGCGAGTGCTGGGGAGGATTGCGTGATCCATGTCTGGGAGGTGTCGGAGCTTGAGAGGAAACGGGAGGGAAATGGGGTGTGCAATCAACTTGTTGCCGTCGTGTGCAATGGTTCGCCGGAGCCGATATTGGCATTGGCAAGTGTTGATGGAAGCTGTTGGGAGAAGAAGCATCGGGCTAGAATCTTGGAAACTCGGAAGTCTGCGAGCTCTGACCGGTTGATGTTTCCAGAGCATGTGTTCGCACTATCAGAAAAACCGGTCAAAACTTTTGAGGGGCATTCGGAGGATGTGCTTGATCTCTGCTGGTCTAAATCTCAGTGACATGCATCCAATTCAACCCTGTTGATGATAGATACTTCATTAGTGGTTCTCTGGATGAAAAGGTTCGCATATGGAGCATTCCGGGACGTGAAATTGTTGATTGGAATGATCTGCATGAAATGGTCACTGCTGCTTGCTATACACCTGATGGACAGAGAGCATTAGTCGGTTCCCACAAGGGCAGCTGTCATATTTATGATACATCTGATAATAAGCTTCTCCAAAAGAAACAGATTGACTTGCAAAATAAGAAAAGGAAGTCCAATCAGAAGAAAATCACAGGGTTTCAGTTTCTCCCAGGAAGTTCTTCAAAGGTGCTCATCACATCTGCAGATTCACGAA] consensusID : consensus_3047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 730 fasta sequence [AACCCCCCCCCNTTTAGTAGTCCGGNAAGCATGCTCATGGAAACCGAGAAAAGTAGAAGATGGGAAGAGGGAGTATTGANCNCNCCCCAGAGGGTAGTTACCTTTTGCAGCTAGTTATACATATATGGTTTCTATATACCTTATGTGGCTAGTTACATATCCAGACTTCACATTTGTCAACANCAGTTACATGCTTCCAGCAATGCATCCCCAAATTATGATTGCTACAATTCCATGAATCTTGTAGTGGTATTCTTATGGTTTTGTAGCTATTCCAGATTTTAATTTCTTTCTTTTTCAAACATCGTGCAGTACTTACTTTCATCTTCAATGGATAAAACAGTGAAGTTATGGCATATGTCAAGAACTTCATGTTTGAAAACATTTTCACATAGTGACTATGGTAAGATCTCGAGTTGACATTAGCAGTTTTGCGTGTTCTCTCTCTCCCCCAAGCACATATGACGTTTCTCACTCTGCGAACATACTTTAAATTTTCCTTTGCTGTTTTGCGTTTCAGTGACATGCATCCAATTCAACCCTGTTGATGATAGATACTTCATTAGTGGTTCTCTGGATGAAAAGGTTCGCATATGGAGCATTCCGGGACGTGAAATTGTTGATTGGAATGATCTGCATGAAANGGTCACTGCTGCTTGCTATACACCTGATGGACAGGTTTCTACACTATATACTGATGTATGTGACCGAAAAGGTCTTTTTGTATGTA] [-] EMBL CA765140 [AACCCCCCCCCNTTTAGTAGTCCGGNAAGCATGCTCATGGAAACCGAGAAAAGTAGAAGATGGGAAGAGGGAGTATTGANCNCNCCCCAGAGGGTAGTTACCTTTTGCAGCTAGTTATACATATATGGTTTCTATATACCTTATGTGGCTAGTTACATATCCAGACTTCACATTTGTCAACANCAGTTACATGCTTCCAGCAATGCATCCCCAAATTATGATTGCTACAATTCCATGAATCTTGTAGTGGTATTCTTATGGTTTTGTAGCTATTCCAGATTTTAATTTCTTTCTTTTTCAAACATCGTGCAGTACTTACTTTCATCTTCAATGGATAAAACAGTGAAGTTATGGCATATGTCAAGAACTTCATGTTTGAAAACATTTTCACATAGTGACTATGGTAAGATCTCGAGTTGACATTAGCAGTTTTGCGTGTTCTCTCTCTCCCCCAAGCACATATGACGTTTCTCACTCTGCGAACATACTTTAAATTTTCCTTTGCTGTTTTGCGTTTCAGTGACATGCATCCAATTCAACCCTGTTGATGATAGATACTTCATTAGTGGTTCTCTGGATGAAAAGGTTCGCATATGGAGCATTCCGGGACGTGAAATTGTTGATTGGAATGATCTGCATGAAANGGTCACTGCTGCTTGCTATACACCTGATGGACAGGTTTCTACACTATATACTGATGTATGTGACCGAAAAGGTCTTTTTGTATGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3047#0 AGACAGGCAGCAGCTGACGCGCGCGCGGGGGCGAGGGCAGGAACCCGTCGCGATTGGGCG 60 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 GACGACGAACCGGTCGCGCGCGGGCGCGTTCGGGAATCGTGGTGGATCTGACGCCACCAC 120 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 CGCCGCCGCCGCCGCCGCTCGGTTGCTCCTCTCCTCGCCGCGCCGTCGCGTGCGTCGCCG 180 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 TCGCCTCCTTGCCCCTAGCGGGCGGCCGGGCAATTCCCCGCGCGCCTGCTCGATCTGCCT 240 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 CGGTGGTCAATGCGGGCGAGGAGATGAGCGGCGCCGAGGAGGAGGAGGAGGAGGAGGAGG 300 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 TGTCCTATGAGGCGCGGGACCGCGTGCTCTCCTCCTCCTCCTGCTCCTCCACCTCGGCCT 360 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 CGGACGACGACGACCACCCGCGGCGAGGTCGGGATGCGGCGGCTGCTGCTGCTGCGGCGG 420 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 CGGCGGCGGCGCTCGACGTGTGGACGTCGGAGCCAGCGCCCGTGCAGGAACGACGCCGGA 480 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 GGCTTCTCCAGATGATGGGGCTCTCCGGTGACCCCTCTCTGGCGCGCCTCGAGATGGGTC 540 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 GATCGGCCTCCTACGACGGGCCCATCCGGCCGGAGACGGTGTCGCCCATCTCCCGATCCA 600 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 GATCGGATGGCAGCGTGCCGGCCTCCGCCACCAAGCCCCCGCTCGCGGCCCGGTCGCGCC 660 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 AAACATCGTCCGACTCCTCCGAGGCCACGCCAGGGGGAGATGACGCGGACCCCAGGTGCC 720 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 TAATCCGAAACCTCGACGACGGCAGCGAGTTCGTGGTGAAGGAGGAGTCCGCGCTCCGCG 780 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 AGGTGGGCACGGGGAGGCAGCTCACCATGGAGGAGTTCGACCTCTGCGTCGGTCGCTCCC 840 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 CCATCGTCCAGGAGCTCATGCGCCGCCAGAACGTGGCAAGCTCCGGTTCGAGCAACGGAG 900 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 CGTCCGCTCTCATCCAGAGGTCCAGCTCTGATTCAAGCAACGGCGCGACGCGCCACAGGC 960 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 GGCGCGGCAGCTGGCTCCGGAGCATCCGCAACGTCGCTGGCTCCATGGTGGTCGGCTCCC 1020 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 GCGACCGCCGAAGCAGCGACGAGAAGGACACCTCCTCGGAAAAGGGAGGGCGTCGGTCCA 1080 consensus_3047#1 -----------------------AACCCCCCCCCNTTTAGTAGTCCGGNAAGCATGCTCA 37 ** * ** * * * * * * ** consensus_3047#0 GCTCAGCCACAGACGACAGCCA--GGAAAGTGCCAGCGCCGTGCGCCGTGGCCCGGAGCG 1138 consensus_3047#1 TGGAAACCGAGAAAAGTAGAAGATGGGAAGAGGGAGTATTG---ANCNCNCCCCAGAGGG 94 * ** * ** ** *** * ** * * *** *** * consensus_3047#0 TGTCAAGGTACGGCAGTACGGGAAGACATGCAAGGAGCTCAGTGGGCTGTTCATGAACCA 1198 consensus_3047#1 TAGTTACCTTTTGCAGC-TAGTTATACATATATGGT-TTCTATATAC--CTTATGTGGCT 150 * * * **** * * **** * ** ** * * * *** * consensus_3047#0 GGATATACAGGCGCACAACGGGTCCATCTGGAGCATAAAGTTTAGTCACGACGGGCGGTA 1258 consensus_3047#1 AGTTACATATCCAGACTTCACATTTGTCAACANCA-GTTACATGCTTCCAGCAATGCATC 209 * ** * * * ** * * ** * ** * * * * * consensus_3047#0 CCTCGCGAGTGCTGGGGAGGATTGCGTGATCCATGTCTGGGAGGTGTCGGAGCTTGAGAG 1318 consensus_3047#1 CCCAAATTATGATTGCTACAATTCCATGAATCTTGTAGTGGTATTCTTATGGTTTTGTAG 269 ** ** * * * *** * *** * *** ** * * * ** ** consensus_3047#0 GAAACGGGAGGGAAATGGGGTGTGCAATCAACTTGTTGCCGTCGT-GTGCAATGGTTCGC 1377 consensus_3047#1 CTATTC---------CAGATTTTAATTTCTTTCTTTTTCAAACATCGTGCAGTACTTACT 320 * * * * ** * ** * * * ***** * ** consensus_3047#0 CGGAGCCGATATTGGCATTGGCAAGTGTTGATGGAAGCTGTTGGGAGAAGAAGCATCGGG 1437 consensus_3047#1 TTCATCTTCAATGGATAAAACAGTGAAGTTATGGCATATGTCAAGA-ACTTCATGTTTGA 379 * * ** * * * * **** * *** ** * * * consensus_3047#0 CTAGAATCTTGGAAACTCGGAAGTCTGCGAGCTCTGACCGGTTGATGTTTCCAGA---GC 1494 consensus_3047#1 AAACATTTTCACATAGT--GACTATGGTAAGATCT--CGAGTTGACATTAGCAGTTTTGC 435 * * * * * * * ** * ** *** * ***** ** *** ** consensus_3047#0 ATGTGTTCGCACTATCAGAAAAACCGGTCAAAACTTTTGAGGGGCATTCGGAGGATGTGC 1554 consensus_3047#1 GTGTTCTCTCTCTCCCCCAAGCACATATGACGTTTCTCACTCTGCGAACATACTTTAAAT 495 *** ** * ** * ** ** * * * * ** * * * consensus_3047#0 TTGATCTCTGCTGGTCTAAATCTCAGTGACATGCATCCAATTCAACCCTGTTGATGATAG 1614 consensus_3047#1 TTT-CCTTTGCTGTTTTGCGTTTCAGTGACATGCATCCAATTCAACCCTGTTGATGATAG 554 ** ** ***** * * * ************************************** consensus_3047#0 ATACTTCATTAGTGGTTCTCTGGATGAAAAGGTTCGCATATGGAGCATTCCGGGACGTGA 1674 consensus_3047#1 ATACTTCATTAGTGGTTCTCTGGATGAAAAGGTTCGCATATGGAGCATTCCGGGACGTGA 614 ************************************************************ consensus_3047#0 AATTGTTGATTGGAATGATCTGCATGAAATGGTCACTGCTGCTTGCTATACACCTGATGG 1734 consensus_3047#1 AATTGTTGATTGGAATGATCTGCATGAAANGGTCACTGCTGCTTGCTATACACCTGATGG 674 ***************************** ****************************** consensus_3047#0 ACAGAGAGCATTAGTCGGTTCCCACAAGGGCAGCTGTCATATTTATGATACATCTGATAA 1794 consensus_3047#1 ACAGGTTTCTACACTATATACTGATGTATGTGACCGAAAAGGTCTTTTTGTATGTA---- 730 **** * * * * * * * * * * * * * ** * consensus_3047#0 TAAGCTTCTCCAAAAGAAACAGATTGACTTGCAAAATAAGAAAAGGAAGTCCAATCAGAA 1854 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 GAAAATCACAGGGTTTCAGTTTCTCCCAGGAAGTTCTTCAAAGGTGCTCATCACATCTGC 1914 consensus_3047#1 ------------------------------------------------------------ consensus_3047#0 AGATTCACGAA 1925 consensus_3047#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||