Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3053 cluster # 3053       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3053#0 length = 2680 sequences # 1  
consensus_3053#1 length = 1596 sequences # 1  

consensusID : consensus_3053#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2680
fasta sequence
                              [TGGACTCGAGCGCACGGCGGGCGCCTTCTTCACGTTCTTCATCTTTGTCTACGTCGGCTACCTCGCCATGTCGGCGCTCTTCCGACTGTTCGGTACCGTCTGCAGGTCGTACGACGGCAGCGCGTCTGGCCGCCGTCATCATCTCGGCGCTCGTCGTGTTCGCCGGCTACGTGATCCCGCGCAACGCCATGTACCGCTGGCTCTTCTGGATCTCGTACATCAACCCGCTCTACTTTGCCTTTTCGGGTGTCATGATGAACGAGTTCAAGGACCTCAGCCTCGCATGCGTCGGCACGTACATTGTGCCGCGCAACCCGCCCGGATCCAACGCGTATCCCAACGACGTCGGCGCCAACCAGGTCTGCACTCTCCCCGGTGCACAGCCTGGCAACCAGTTTGTGGCCGGCAACGACTACCTGCGCGCCAGCTTCGGCTACGACTCGAGCGATCTCTGGCTCTACTTTGGTGTGGTCGTCATCTTCTTCGTCGGCCTGGTGGCCGTCACGATGATCGCCATCGAGGTGTTCTCGCACGGTTCCTTCTCGAGCGCTCTGACCATTGTCAAGAAGCCCAACAAGGAGGAGCAGAAGCTCAACCAGCGTCTCAAGGAGCGCGCCTCGATGAAGGAGAAGGATGCCAGCAAGCAGCTCGACGTCGAGTCGCAGCCGATCACCTGGGAGAAGATCCGCTACACGGTGCCCGTCAAGGGCGGCAAGCTGCAGCTTCTGGACGACGTTTACGGCTACTGCCGCCCTGGTACCCTGACGGCGCTCATGGGTGCTTCGGGTGCTGGTAAGACGACTCTGCTCGATGTGCTTGCGGACCGCAAGTCGATCGGTGTCATCAGCGGCGAGCGTCTGATCGGCGGCAAGAAGATCGGCATCGACTTCCAGCGTGGATGCGGTTACGCCGAGCAGCAGGACATCCACGAGGGCACGTCGACGGTGCGCGAGGCTCTGCGCTTCAGTGCGTACCTGCGCCAGCCGCAGCACGTGCCCAAGGAGGACAAGGATGCGTACGTCGAGGACATTATCGAGCTGCTCGAGATGCAGGAGATTGCGGATGCCATGATCGGTGTTCCCGAGTTTGGCCTCGGCGTCGGCGACCGCAAGCGTGTGACGATCGGTGTCGAACTTGCTGCGCGCCCGGACCTGCTGCTCTTCCTCGACGAGCCCACTTCGGGTCTGGACGGTCAGACGGCGTACAACGTGGTGCGCTTCCTCAAGAAGCTCTCTGCGTCCGGTCAGGCGATCCTGTGCACGATCCACCAGCCCAACGCGCTGCTCTTCGAGCAGTTCGACCGCCTGCTCCTGCTCGAGCGCGGAGGCAAGACGGTCTACTTTGGCCCCATCGGACCCAACGCGACGCACATTGTCGACTACTTTGCCGAGCGCGGAGCCAAGTGCCCCGAAAAGGTCAACATGGCCGAGTACATGCTCGACGCCATGGGAGCCGGATCGATGAAGCGCGTGGGCAACAAGCCGTGGTCGCAGCTGTACCTCGAGTCGGAGCTCTTCCAGGAGAACCTGGCTGAGATCGAGAAGATCAAGCAGGAGACCAACGCTTCCACCAAGGCCAACGAGGACGAAGGCAACAAGAAGAAGCAGACCGAGTTCGCCACCTCGTTCGGCACGCAGGTCAAGGTGGTTCTCAAGCGCTCGCTGCTCAGCACGTGGCGCCAGCCCGACTACCAGTTTACGCGCCTCTTCCAGCACGCCGCCATCTCGCTCATCACGGGTCTTTGCTTCCTCAACCTCAGCAACTCGGTCGCCTCGCTGCAGTACCGTGTGTTTGGTATCTTCATGGGTACGGTGCTGCCGGCGATCATCCTGGCGCAGATCGAGCCGTTCTTCATCATGGCACGCTCGGTGTTCATCCGCGAAGACTCGAGCAAGATGTACAGCGGCTCGGTGTTTGCGATCACGCAGCTGATCCAGGAGGTGCCGTTCAGCATTGCGTCTTCGGTGGTGTACTTCCTGCTCTTCTACTACCCGACGGGCTTCCAGACGGGCTCGGACCGCGCCGGCTACTTCTTCGCCATGCTGCTCGTCACCGAGCTGTTCGCCGTGACGCTCGGCCAGGCGGTGGCTGCGATCTCGCCGTCGGTCTACATCGCGTCGCTCTTCAACCCGTTCCTGATCATCATCATGTCGCTGCTGTGCGGTGTCACGATCCCCTACCCGAACCTGCCGCACTTCTTCAAGAGCTGACTGTACTGGGTCAACCCGCTGACGTACCTCGTGTCGGGACTGATAACCAACGAGATGCACGAGCTGCCCATCCGCTGTGGCGAGTCCGAGCTGGCTCGCTTCCAGCCGCCGTCGGGCCAGACGTGCACGCAGTGGGCCGGCACCTTCCTCAACGCCTTTGGCGGCTACCTCGAGAACCCGGATGCGACGGCCGACTGCGGCTACTGCCAGTACTCGAGGGGCGACGACTTCTACGCTGGCCTCAACATCAAGTTCTCCGAGCGCGGCCGCAACATCGGCATCGTCATCGCCTTTGTCGCCTTCAACGCCATCGCCACGATCGTCGCTTCGCGCTACATCAAGTACGCCAACCGCTAGGAGGCGTGCGAACGAACATTCCAAATTTTCCCACATAGATACCAGTCTTGTTACGCCTTAGCATCTTAACGCCTTCCGTCGTTGTTAACTTTGACGTTTATAATAGATGTTGT]

[+] EMBL AK109556             [TGGACTCGAGCGCACGGCGGGCGCCTTCTTCACGTTCTTCATCTTTGTCTACGTCGGCTACCTCGCCATGTCGGCGCTCTTCCGACTGTTCGGTACCGTCTGCAGGTCGTACGACGGCAGCGCGTCTGGCCGCCGTCATCATCTCGGCGCTCGTCGTGTTCGCCGGCTACGTGATCCCGCGCAACGCCATGTACCGCTGGCTCTTCTGGATCTCGTACATCAACCCGCTCTACTTTGCCTTTTCGGGTGTCATGATGAACGAGTTCAAGGACCTCAGCCTCGCATGCGTCGGCACGTACATTGTGCCGCGCAACCCGCCCGGATCCAACGCGTATCCCAACGACGTCGGCGCCAACCAGGTCTGCACTCTCCCCGGTGCACAGCCTGGCAACCAGTTTGTGGCCGGCAACGACTACCTGCGCGCCAGCTTCGGCTACGACTCGAGCGATCTCTGGCTCTACTTTGGTGTGGTCGTCATCTTCTTCGTCGGCCTGGTGGCCGTCACGATGATCGCCATCGAGGTGTTCTCGCACGGTTCCTTCTCGAGCGCTCTGACCATTGTCAAGAAGCCCAACAAGGAGGAGCAGAAGCTCAACCAGCGTCTCAAGGAGCGCGCCTCGATGAAGGAGAAGGATGCCAGCAAGCAGCTCGACGTCGAGTCGCAGCCGATCACCTGGGAGAAGATCCGCTACACGGTGCCCGTCAAGGGCGGCAAGCTGCAGCTTCTGGACGACGTTTACGGCTACTGCCGCCCTGGTACCCTGACGGCGCTCATGGGTGCTTCGGGTGCTGGTAAGACGACTCTGCTCGATGTGCTTGCGGACCGCAAGTCGATCGGTGTCATCAGCGGCGAGCGTCTGATCGGCGGCAAGAAGATCGGCATCGACTTCCAGCGTGGATGCGGTTACGCCGAGCAGCAGGACATCCACGAGGGCACGTCGACGGTGCGCGAGGCTCTGCGCTTCAGTGCGTACCTGCGCCAGCCGCAGCACGTGCCCAAGGAGGACAAGGATGCGTACGTCGAGGACATTATCGAGCTGCTCGAGATGCAGGAGATTGCGGATGCCATGATCGGTGTTCCCGAGTTTGGCCTCGGCGTCGGCGACCGCAAGCGTGTGACGATCGGTGTCGAACTTGCTGCGCGCCCGGACCTGCTGCTCTTCCTCGACGAGCCCACTTCGGGTCTGGACGGTCAGACGGCGTACAACGTGGTGCGCTTCCTCAAGAAGCTCTCTGCGTCCGGTCAGGCGATCCTGTGCACGATCCACCAGCCCAACGCGCTGCTCTTCGAGCAGTTCGACCGCCTGCTCCTGCTCGAGCGCGGAGGCAAGACGGTCTACTTTGGCCCCATCGGACCCAACGCGACGCACATTGTCGACTACTTTGCCGAGCGCGGAGCCAAGTGCCCCGAAAAGGTCAACATGGCCGAGTACATGCTCGACGCCATGGGAGCCGGATCGATGAAGCGCGTGGGCAACAAGCCGTGGTCGCAGCTGTACCTCGAGTCGGAGCTCTTCCAGGAGAACCTGGCTGAGATCGAGAAGATCAAGCAGGAGACCAACGCTTCCACCAAGGCCAACGAGGACGAAGGCAACAAGAAGAAGCAGACCGAGTTCGCCACCTCGTTCGGCACGCAGGTCAAGGTGGTTCTCAAGCGCTCGCTGCTCAGCACGTGGCGCCAGCCCGACTACCAGTTTACGCGCCTCTTCCAGCACGCCGCCATCTCGCTCATCACGGGTCTTTGCTTCCTCAACCTCAGCAACTCGGTCGCCTCGCTGCAGTACCGTGTGTTTGGTATCTTCATGGGTACGGTGCTGCCGGCGATCATCCTGGCGCAGATCGAGCCGTTCTTCATCATGGCACGCTCGGTGTTCATCCGCGAAGACTCGAGCAAGATGTACAGCGGCTCGGTGTTTGCGATCACGCAGCTGATCCAGGAGGTGCCGTTCAGCATTGCGTCTTCGGTGGTGTACTTCCTGCTCTTCTACTACCCGACGGGCTTCCAGACGGGCTCGGACCGCGCCGGCTACTTCTTCGCCATGCTGCTCGTCACCGAGCTGTTCGCCGTGACGCTCGGCCAGGCGGTGGCTGCGATCTCGCCGTCGGTCTACATCGCGTCGCTCTTCAACCCGTTCCTGATCATCATCATGTCGCTGCTGTGCGGTGTCACGATCCCCTACCCGAACCTGCCGCACTTCTTCAAGAGCTGACTGTACTGGGTCAACCCGCTGACGTACCTCGTGTCGGGACTGATAACCAACGAGATGCACGAGCTGCCCATCCGCTGTGGCGAGTCCGAGCTGGCTCGCTTCCAGCCGCCGTCGGGCCAGACGTGCACGCAGTGGGCCGGCACCTTCCTCAACGCCTTTGGCGGCTACCTCGAGAACCCGGATGCGACGGCCGACTGCGGCTACTGCCAGTACTCGAGGGGCGACGACTTCTACGCTGGCCTCAACATCAAGTTCTCCGAGCGCGGCCGCAACATCGGCATCGTCATCGCCTTTGTCGCCTTCAACGCCATCGCCACGATCGTCGCTTCGCGCTACATCAAGTACGCCAACCGCTAGGAGGCGTGCGAACGAACATTCCAAATTTTCCCACATAGATACCAGTCTTGTTACGCCTTAGCATCTTAACGCCTTCCGTCGTTGTTAACTTTGACGTTTATAATAGATGTTGT]


>consensus_3053#0 TGGACTCGAGCGCACGGCGGGCGCCTTCTTCACGTTCTTCATCTTTGTCTACGTCGGCTA CCTCGCCATGTCGGCGCTCTTCCGACTGTTCGGTACCGTCTGCAGGTCGTACGACGGCAG CGCGTCTGGCCGCCGTCATCATCTCGGCGCTCGTCGTGTTCGCCGGCTACGTGATCCCGC GCAACGCCATGTACCGCTGGCTCTTCTGGATCTCGTACATCAACCCGCTCTACTTTGCCT TTTCGGGTGTCATGATGAACGAGTTCAAGGACCTCAGCCTCGCATGCGTCGGCACGTACA TTGTGCCGCGCAACCCGCCCGGATCCAACGCGTATCCCAACGACGTCGGCGCCAACCAGG TCTGCACTCTCCCCGGTGCACAGCCTGGCAACCAGTTTGTGGCCGGCAACGACTACCTGC GCGCCAGCTTCGGCTACGACTCGAGCGATCTCTGGCTCTACTTTGGTGTGGTCGTCATCT TCTTCGTCGGCCTGGTGGCCGTCACGATGATCGCCATCGAGGTGTTCTCGCACGGTTCCT TCTCGAGCGCTCTGACCATTGTCAAGAAGCCCAACAAGGAGGAGCAGAAGCTCAACCAGC GTCTCAAGGAGCGCGCCTCGATGAAGGAGAAGGATGCCAGCAAGCAGCTCGACGTCGAGT CGCAGCCGATCACCTGGGAGAAGATCCGCTACACGGTGCCCGTCAAGGGCGGCAAGCTGC AGCTTCTGGACGACGTTTACGGCTACTGCCGCCCTGGTACCCTGACGGCGCTCATGGGTG CTTCGGGTGCTGGTAAGACGACTCTGCTCGATGTGCTTGCGGACCGCAAGTCGATCGGTG TCATCAGCGGCGAGCGTCTGATCGGCGGCAAGAAGATCGGCATCGACTTCCAGCGTGGAT GCGGTTACGCCGAGCAGCAGGACATCCACGAGGGCACGTCGACGGTGCGCGAGGCTCTGC GCTTCAGTGCGTACCTGCGCCAGCCGCAGCACGTGCCCAAGGAGGACAAGGATGCGTACG TCGAGGACATTATCGAGCTGCTCGAGATGCAGGAGATTGCGGATGCCATGATCGGTGTTC CCGAGTTTGGCCTCGGCGTCGGCGACCGCAAGCGTGTGACGATCGGTGTCGAACTTGCTG CGCGCCCGGACCTGCTGCTCTTCCTCGACGAGCCCACTTCGGGTCTGGACGGTCAGACGG CGTACAACGTGGTGCGCTTCCTCAAGAAGCTCTCTGCGTCCGGTCAGGCGATCCTGTGCA CGATCCACCAGCCCAACGCGCTGCTCTTCGAGCAGTTCGACCGCCTGCTCCTGCTCGAGC GCGGAGGCAAGACGGTCTACTTTGGCCCCATCGGACCCAACGCGACGCACATTGTCGACT ACTTTGCCGAGCGCGGAGCCAAGTGCCCCGAAAAGGTCAACATGGCCGAGTACATGCTCG ACGCCATGGGAGCCGGATCGATGAAGCGCGTGGGCAACAAGCCGTGGTCGCAGCTGTACC TCGAGTCGGAGCTCTTCCAGGAGAACCTGGCTGAGATCGAGAAGATCAAGCAGGAGACCA ACGCTTCCACCAAGGCCAACGAGGACGAAGGCAACAAGAAGAAGCAGACCGAGTTCGCCA CCTCGTTCGGCACGCAGGTCAAGGTGGTTCTCAAGCGCTCGCTGCTCAGCACGTGGCGCC AGCCCGACTACCAGTTTACGCGCCTCTTCCAGCACGCCGCCATCTCGCTCATCACGGGTC TTTGCTTCCTCAACCTCAGCAACTCGGTCGCCTCGCTGCAGTACCGTGTGTTTGGTATCT TCATGGGTACGGTGCTGCCGGCGATCATCCTGGCGCAGATCGAGCCGTTCTTCATCATGG CACGCTCGGTGTTCATCCGCGAAGACTCGAGCAAGATGTACAGCGGCTCGGTGTTTGCGA TCACGCAGCTGATCCAGGAGGTGCCGTTCAGCATTGCGTCTTCGGTGGTGTACTTCCTGC TCTTCTACTACCCGACGGGCTTCCAGACGGGCTCGGACCGCGCCGGCTACTTCTTCGCCA TGCTGCTCGTCACCGAGCTGTTCGCCGTGACGCTCGGCCAGGCGGTGGCTGCGATCTCGC CGTCGGTCTACATCGCGTCGCTCTTCAACCCGTTCCTGATCATCATCATGTCGCTGCTGT GCGGTGTCACGATCCCCTACCCGAACCTGCCGCACTTCTTCAAGAGCTGACTGTACTGGG TCAACCCGCTGACGTACCTCGTGTCGGGACTGATAACCAACGAGATGCACGAGCTGCCCA TCCGCTGTGGCGAGTCCGAGCTGGCTCGCTTCCAGCCGCCGTCGGGCCAGACGTGCACGC AGTGGGCCGGCACCTTCCTCAACGCCTTTGGCGGCTACCTCGAGAACCCGGATGCGACGG CCGACTGCGGCTACTGCCAGTACTCGAGGGGCGACGACTTCTACGCTGGCCTCAACATCA AGTTCTCCGAGCGCGGCCGCAACATCGGCATCGTCATCGCCTTTGTCGCCTTCAACGCCA TCGCCACGATCGTCGCTTCGCGCTACATCAAGTACGCCAACCGCTAGGAGGCGTGCGAAC GAACATTCCAAATTTTCCCACATAGATACCAGTCTTGTTACGCCTTAGCATCTTAACGCC TTCCGTCGTTGTTAACTTTGACGTTTATAATAGATGTTGT



consensusID : consensus_3053#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1596
fasta sequence
                              [GGCGGAGAAGGACCAGTACGTGGAGGACATTATCGAGCTGCTCGAGCTGCAGGACCTGGCGGAGGCCATCATTGGCTACCCTGGTTTCGGTCTTGGCGTCGGCGACCGCAAGCGTGTCACGATCGGTGTGGAGCTGGCGGCCAAGCCATCGATGCTGCTCTTCCTCGACGAGCCTACTTCGGGTCTGGACGGTCAGTCGGCGTTCACGATTTGCAGGCTGTTGCGCAAGCTGGCGGACAACGGCCAGACGATCCTGTGCACGATCCACCAGCCCTCGGCTCTGCTGTTCGAGACGTTTGACAGGCTGCTGCTGCTGGAACGTGGCGGCAAGACGGTCTACTCGGGACCGATTGGTCGCGACGGCAAGCATGTGATCGAGTACTTTGCGGCACGCGGTGCGCAGTGCCCTCCCGGCGTCAACCCGGCAGAGTACATGCTCGACGCGATCGGAGCGGGAAGCCAGCCGCGCGTGGGCGACTACGACTGGGCGGACTGGTACCTCGAGTCGGACATGCACCAGGACAACCTGCGCGAGATCGAGGCGATCAACCGCGAAGGCGCTGCGCTGCCCAAGCCCGAGGGTAGGGGCAGCGAGTATGCTGCGCCGTGGTCGTACCAGTTCAAGGTGGTGCTGCGCAGGACGATGCTGAGCACGTGGCGCCAGCCTGCGTACCAGTACACGCGATTCTTCCAGCACCTCGCCTTCGCTCTGCTCACTGGTCTGCTCTTCTTGCAGCTGGGCAACAACGTAGCTGCGCTGCAGTACCGACTGTTCGTCATCTTTATGCTGGCGATTATTCCGGCGATCATCATGGCGCAGATCATGCCGTTCTGGATCATGTCGCGCTCCATCTGGATCCGCGAGGAGACGAGCAAGACTTTTGCCGGCACCGTGTTTGCGGCGACGCAGCTCATCTCCGAGGTGCCGTATGCGCTGGTGTGCGGTACGGTGTTCTTTGTGCTGATCTACTACCTGGCGGGCTTCAACACGGATTCGGGACGATCTGCGTACTTTTGGTTCATGACGTTCCTGCTGGAGCTGTTCTCGATTTCGATTGGCACCATGGTGGCGTCGTTCTCCAAGTCGGCCTACTTTGCGTCGCTGTTTGTGCCGTTTATCATTCTGGTGCTCAACCTGACGTGCGGTATCCTGTCGCCTCCGCAGGCCATGTCGAGCGGGCTGTACAGCAAGTTCCTGTACAACGTCAACCCGATCCGCTTTACGATCTCGCCGCTCATCGCCAACGAGCTGTACGGGCTTTCGATCCAGTGCGCTGCCAACGAGTTCAGCCGCTTCTCGCCTCCGAGTGGGCAGACGTGCGAGCAGTGGGCGGGCAACTACATCTCCAGAATTGGCGGGTATCTGGCCAACCCCTCGGCGACGCAGGACTGCACGTACTGCACCTACGCCACCGGCGAGCAGTTCTACGCTCCTTTCGGTATCACGTGGGAAGAGCGCGGCCGCGACCTGGGCATCTTGATCGCGTTTGTGGCGTTCAACTGCGTCGCGACGATTGTGTTCACCAAGGTGTTCAAGTTCAGCAACCGTTGATCCACACGGCTCTCTTGCATATATAGATTCGCAATTCCACCCTT]

[+] EMBL AK107326             [GGCGGAGAAGGACCAGTACGTGGAGGACATTATCGAGCTGCTCGAGCTGCAGGACCTGGCGGAGGCCATCATTGGCTACCCTGGTTTCGGTCTTGGCGTCGGCGACCGCAAGCGTGTCACGATCGGTGTGGAGCTGGCGGCCAAGCCATCGATGCTGCTCTTCCTCGACGAGCCTACTTCGGGTCTGGACGGTCAGTCGGCGTTCACGATTTGCAGGCTGTTGCGCAAGCTGGCGGACAACGGCCAGACGATCCTGTGCACGATCCACCAGCCCTCGGCTCTGCTGTTCGAGACGTTTGACAGGCTGCTGCTGCTGGAACGTGGCGGCAAGACGGTCTACTCGGGACCGATTGGTCGCGACGGCAAGCATGTGATCGAGTACTTTGCGGCACGCGGTGCGCAGTGCCCTCCCGGCGTCAACCCGGCAGAGTACATGCTCGACGCGATCGGAGCGGGAAGCCAGCCGCGCGTGGGCGACTACGACTGGGCGGACTGGTACCTCGAGTCGGACATGCACCAGGACAACCTGCGCGAGATCGAGGCGATCAACCGCGAAGGCGCTGCGCTGCCCAAGCCCGAGGGTAGGGGCAGCGAGTATGCTGCGCCGTGGTCGTACCAGTTCAAGGTGGTGCTGCGCAGGACGATGCTGAGCACGTGGCGCCAGCCTGCGTACCAGTACACGCGATTCTTCCAGCACCTCGCCTTCGCTCTGCTCACTGGTCTGCTCTTCTTGCAGCTGGGCAACAACGTAGCTGCGCTGCAGTACCGACTGTTCGTCATCTTTATGCTGGCGATTATTCCGGCGATCATCATGGCGCAGATCATGCCGTTCTGGATCATGTCGCGCTCCATCTGGATCCGCGAGGAGACGAGCAAGACTTTTGCCGGCACCGTGTTTGCGGCGACGCAGCTCATCTCCGAGGTGCCGTATGCGCTGGTGTGCGGTACGGTGTTCTTTGTGCTGATCTACTACCTGGCGGGCTTCAACACGGATTCGGGACGATCTGCGTACTTTTGGTTCATGACGTTCCTGCTGGAGCTGTTCTCGATTTCGATTGGCACCATGGTGGCGTCGTTCTCCAAGTCGGCCTACTTTGCGTCGCTGTTTGTGCCGTTTATCATTCTGGTGCTCAACCTGACGTGCGGTATCCTGTCGCCTCCGCAGGCCATGTCGAGCGGGCTGTACAGCAAGTTCCTGTACAACGTCAACCCGATCCGCTTTACGATCTCGCCGCTCATCGCCAACGAGCTGTACGGGCTTTCGATCCAGTGCGCTGCCAACGAGTTCAGCCGCTTCTCGCCTCCGAGTGGGCAGACGTGCGAGCAGTGGGCGGGCAACTACATCTCCAGAATTGGCGGGTATCTGGCCAACCCCTCGGCGACGCAGGACTGCACGTACTGCACCTACGCCACCGGCGAGCAGTTCTACGCTCCTTTCGGTATCACGTGGGAAGAGCGCGGCCGCGACCTGGGCATCTTGATCGCGTTTGTGGCGTTCAACTGCGTCGCGACGATTGTGTTCACCAAGGTGTTCAAGTTCAGCAACCGTTGATCCACACGGCTCTCTTGCATATATAGATTCGCAATTCCACCCTT]


>consensus_3053#1 GGCGGAGAAGGACCAGTACGTGGAGGACATTATCGAGCTGCTCGAGCTGCAGGACCTGGC GGAGGCCATCATTGGCTACCCTGGTTTCGGTCTTGGCGTCGGCGACCGCAAGCGTGTCAC GATCGGTGTGGAGCTGGCGGCCAAGCCATCGATGCTGCTCTTCCTCGACGAGCCTACTTC GGGTCTGGACGGTCAGTCGGCGTTCACGATTTGCAGGCTGTTGCGCAAGCTGGCGGACAA CGGCCAGACGATCCTGTGCACGATCCACCAGCCCTCGGCTCTGCTGTTCGAGACGTTTGA CAGGCTGCTGCTGCTGGAACGTGGCGGCAAGACGGTCTACTCGGGACCGATTGGTCGCGA CGGCAAGCATGTGATCGAGTACTTTGCGGCACGCGGTGCGCAGTGCCCTCCCGGCGTCAA CCCGGCAGAGTACATGCTCGACGCGATCGGAGCGGGAAGCCAGCCGCGCGTGGGCGACTA CGACTGGGCGGACTGGTACCTCGAGTCGGACATGCACCAGGACAACCTGCGCGAGATCGA GGCGATCAACCGCGAAGGCGCTGCGCTGCCCAAGCCCGAGGGTAGGGGCAGCGAGTATGC TGCGCCGTGGTCGTACCAGTTCAAGGTGGTGCTGCGCAGGACGATGCTGAGCACGTGGCG CCAGCCTGCGTACCAGTACACGCGATTCTTCCAGCACCTCGCCTTCGCTCTGCTCACTGG TCTGCTCTTCTTGCAGCTGGGCAACAACGTAGCTGCGCTGCAGTACCGACTGTTCGTCAT CTTTATGCTGGCGATTATTCCGGCGATCATCATGGCGCAGATCATGCCGTTCTGGATCAT GTCGCGCTCCATCTGGATCCGCGAGGAGACGAGCAAGACTTTTGCCGGCACCGTGTTTGC GGCGACGCAGCTCATCTCCGAGGTGCCGTATGCGCTGGTGTGCGGTACGGTGTTCTTTGT GCTGATCTACTACCTGGCGGGCTTCAACACGGATTCGGGACGATCTGCGTACTTTTGGTT CATGACGTTCCTGCTGGAGCTGTTCTCGATTTCGATTGGCACCATGGTGGCGTCGTTCTC CAAGTCGGCCTACTTTGCGTCGCTGTTTGTGCCGTTTATCATTCTGGTGCTCAACCTGAC GTGCGGTATCCTGTCGCCTCCGCAGGCCATGTCGAGCGGGCTGTACAGCAAGTTCCTGTA CAACGTCAACCCGATCCGCTTTACGATCTCGCCGCTCATCGCCAACGAGCTGTACGGGCT TTCGATCCAGTGCGCTGCCAACGAGTTCAGCCGCTTCTCGCCTCCGAGTGGGCAGACGTG CGAGCAGTGGGCGGGCAACTACATCTCCAGAATTGGCGGGTATCTGGCCAACCCCTCGGC GACGCAGGACTGCACGTACTGCACCTACGCCACCGGCGAGCAGTTCTACGCTCCTTTCGG TATCACGTGGGAAGAGCGCGGCCGCGACCTGGGCATCTTGATCGCGTTTGTGGCGTTCAA CTGCGTCGCGACGATTGTGTTCACCAAGGTGTTCAAGTTCAGCAACCGTTGATCCACACG GCTCTCTTGCATATATAGATTCGCAATTCCACCCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3053#0      TGGACTCGAGCGCACGGCGGGCGCCTTCTTCACGTTCTTCATCTTTGTCTACGTCGGCTA 60
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      CCTCGCCATGTCGGCGCTCTTCCGACTGTTCGGTACCGTCTGCAGGTCGTACGACGGCAG 120
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      CGCGTCTGGCCGCCGTCATCATCTCGGCGCTCGTCGTGTTCGCCGGCTACGTGATCCCGC 180
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      GCAACGCCATGTACCGCTGGCTCTTCTGGATCTCGTACATCAACCCGCTCTACTTTGCCT 240
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      TTTCGGGTGTCATGATGAACGAGTTCAAGGACCTCAGCCTCGCATGCGTCGGCACGTACA 300
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      TTGTGCCGCGCAACCCGCCCGGATCCAACGCGTATCCCAACGACGTCGGCGCCAACCAGG 360
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      TCTGCACTCTCCCCGGTGCACAGCCTGGCAACCAGTTTGTGGCCGGCAACGACTACCTGC 420
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      GCGCCAGCTTCGGCTACGACTCGAGCGATCTCTGGCTCTACTTTGGTGTGGTCGTCATCT 480
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      TCTTCGTCGGCCTGGTGGCCGTCACGATGATCGCCATCGAGGTGTTCTCGCACGGTTCCT 540
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      TCTCGAGCGCTCTGACCATTGTCAAGAAGCCCAACAAGGAGGAGCAGAAGCTCAACCAGC 600
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      GTCTCAAGGAGCGCGCCTCGATGAAGGAGAAGGATGCCAGCAAGCAGCTCGACGTCGAGT 660
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      CGCAGCCGATCACCTGGGAGAAGATCCGCTACACGGTGCCCGTCAAGGGCGGCAAGCTGC 720
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      AGCTTCTGGACGACGTTTACGGCTACTGCCGCCCTGGTACCCTGACGGCGCTCATGGGTG 780
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      CTTCGGGTGCTGGTAAGACGACTCTGCTCGATGTGCTTGCGGACCGCAAGTCGATCGGTG 840
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      TCATCAGCGGCGAGCGTCTGATCGGCGGCAAGAAGATCGGCATCGACTTCCAGCGTGGAT 900
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      GCGGTTACGCCGAGCAGCAGGACATCCACGAGGGCACGTCGACGGTGCGCGAGGCTCTGC 960
consensus_3053#1      ------------------------------------------------------------
                                                                                  

consensus_3053#0      GCTTCAGTGCGTACCTGCGCCAGCCGCAGCACGTGCCCAAGGAGGACAAGGATGCGTACG 1020
consensus_3053#1      ----------------------------------------GGCGGAGAAGGACCAGTACG 20
                                                              ** *** *****   *****

consensus_3053#0      TCGAGGACATTATCGAGCTGCTCGAGATGCAGGAGATTGCGGATGCCATGATCGGTGTTC 1080
consensus_3053#1      TGGAGGACATTATCGAGCTGCTCGAGCTGCAGGACCTGGCGGAGGCCATCATTGGCTACC 80
                      * ************************ *******  * ***** ***** ** **    *

consensus_3053#0      CCGAGTTTGGCCTCGGCGTCGGCGACCGCAAGCGTGTGACGATCGGTGTCGAACTTGCTG 1140
consensus_3053#1      CTGGTTTCGGTCTTGGCGTCGGCGACCGCAAGCGTGTCACGATCGGTGTGGAGCTGGCGG 140
                      * *  ** ** ** *********************** *********** ** ** ** *

consensus_3053#0      CGCGCCCGGACCTGCTGCTCTTCCTCGACGAGCCCACTTCGGGTCTGGACGGTCAGACGG 1200
consensus_3053#1      CCAAGCCATCGATGCTGCTCTTCCTCGACGAGCCTACTTCGGGTCTGGACGGTCAGTCGG 200
                      *    **     ********************** ********************* ***

consensus_3053#0      CGTACAACGTGGTGCGCTTCCTCAAGAAGCTCTCTGCGTCCGGTCAGGCGATCCTGTGCA 1260
consensus_3053#1      CGTTCACGATTTGCAGGCTGTTGCGCAAGCTGGCGGACAACGGCCAGACGATCCTGTGCA 260
                      *** **   *     *  *  *    *****  * *    *** *** ************

consensus_3053#0      CGATCCACCAGCCCAACGCGCTGCTCTTCGAGCAGTTCGACCGCCTGCTCCTGCTCGAGC 1320
consensus_3053#1      CGATCCACCAGCCCTCGGCTCTGCTGTTCGAGACGTTTGACAGGCTGCTGCTGCTGGAAC 320
                      **************   ** ***** ******  *** *** * ***** ***** ** *

consensus_3053#0      GCGGAGGCAAGACGGTCTACTTTGGCCCCATCGGACCCAACGCGACGCACATTGTCGACT 1380
consensus_3053#1      GTGGCGGCAAGACGGTCTACTCGGGACCGATTGGTCGCGACGGCAAGCATGTGATCGAGT 380
                      * ** ****************  ** ** ** ** * * ***  * ***  *  **** *

consensus_3053#0      ACTTTGCCGAGCGCGGAGCCAAGTGCCCCGAAAAGGTCAACATGGCCGAGTACATGCTCG 1440
consensus_3053#1      ACTTTGCGGCACGCGGTGCGCAGTGCCCTCCCGGCGTCAACCCGGCAGAGTACATGCTCG 440
                      ******* *  ***** **  *******       ******  *** *************

consensus_3053#0      ACGCCATGGGAGCCGGATCGATGAAGCGCGTGGGCAACAAGCCGTGGTCGCAGCTGTACC 1500
consensus_3053#1      ACGCGATCGGAGCGGGAAGCCAGCCGCGCGTGGGCGACTACGACTGGGCGGACTGGTACC 500
                      **** ** ***** ***     *  ********** ** *    *** ** *   *****

consensus_3053#0      TCGAGTCGGAGCTCTTCCAGGAGAACCTGGCTGAGATCGAGAAGATCAAGCAGGAGACCA 1560
consensus_3053#1      TCGAGTCGGACATGCACCAGGACAACCTGCGCGAGATCGAGGCGATCAACCGCGAAGGCG 560
                      **********  *   ****** ******   *********  ****** *  **   * 

consensus_3053#0      ACGCTTCCACCAAGGCCAACGAGGACGAAGGCAACAAGAAGAAGCAGACCGAGTTCGCCA 1620
consensus_3053#1      CTGCGCTGCCCAAGCCC---GAGGGTAGGGGCAGCGAGTA-------------TGCTGCG 604
                        **     ***** **   ****     **** * ** *             * *  * 

consensus_3053#0      CCTCGTTCGGCACGCAGGTCAAGGTGGTTCTCAAGCGCTCGCTGCTCAGCACGTGGCGCC 1680
consensus_3053#1      CCGTGGTCG-TAC-CAGTTCAAGGTGGTGCTGCGCAGGACGATGCTGAGCACGTGGCGCC 662
                      **  * ***  ** *** ********** **     *  ** **** *************

consensus_3053#0      AGCCCGACTACCAGTTTACGCGCCTCTTCCAGCACGCCGCCATCTCGCTCATCACGGGTC 1740
consensus_3053#1      AGCCTGCGTACCAGTACACGCGATTCTTCCAGCACCTCGCCTTCGCTCTGCTCACTGGTC 722
                      **** *  *******  *****  ***********  **** ** * **  **** ****

consensus_3053#0      TTTGCTTCCTCAACCTCAGCAACTCGGTCGCCTCGCTGCAGTACCGTGTGTTTGGTATCT 1800
consensus_3053#1      TGCTCTTCTTGCAGCTGGGCAACAACGTAGCTGCGCTGCAGTACCGACTGTTCGTCATCT 782
                      *   **** *  * **  *****   ** **  *************  **** *  ****

consensus_3053#0      TCATGGGTACGGTGCTGCCGGCGATCATCCTGGCGCAGATCGAGCCGTTCTTCATCATGG 1860
consensus_3053#1      TTATGCTGGCGATTATTCCGGCGATCATCATGGCGCAGATCATGCCGTTCTGGATCATGT 842
                      * ***    ** *  * ************ ***********  ********  ****** 

consensus_3053#0      CACGCTCGGTGTTCATCCGCGAAGACTCGAGCAAGATGTACAGCGGCTCGGTGTTTGCGA 1920
consensus_3053#1      CGCGCTCCATCTGGATCCGCGAGGAGACGAGCAAGACTTTTGCCGGCACCGTGTTTGCGG 902
                      * *****  * *  ******** **  *********  *    **** * ********* 

consensus_3053#0      TCACGCAGCTGATCCAGGAGGTGCCGTTCAGCATTGCGTCTTCGGTGGTGTACTTCCTGC 1980
consensus_3053#1      CGACGCAGCTCATCTCCGAGGTGCCGTATGCGCTGGTGTGCGGTACGGTGTTCTTTGTGC 962
                        ******** ***   **********      * * **       ***** ***  ***

consensus_3053#0      TCTTCTACTACCCGACGGGCTTCCAGACGGGCTCGGACCGCGCCGGCTACTTCTTCGCCA 2040
consensus_3053#1      TGATCTACTACCTGGCGGGCTTCAACACGGATTCGGGACGATCTGCGTACTTTTGGTTCA 1022
                      *  ********* * ******** * ****  ****  **  * *  ***** *    **

consensus_3053#0      TGCTGCTCGTCACCGAGCTGTTCGCCGTGACGCTCGGCCAGGCGGTGGCTGCGATCTCGC 2100
consensus_3053#1      TGACGTTCCTGCTGGAGCTGTTCTCGATTTCGATTGGCACCATGGTGGCGTCGTTCTCCA 1082
                      **  * ** *    ********* *  *  ** * ***     ******  ** ****  

consensus_3053#0      CGTCGGTCTACATCGCGTCGCTCTTCAACCCGTTCCTGATCATCATCATGTCGCTGCTGT 2160
consensus_3053#1      AGTCGGCCTACTTTGCGTCGCTGTTTGTGCCGTTTATCATTCTGGTGCTCAACCTGACGT 1142
                       ***** **** * ******** **    *****  * **  *  *  *    ***  **

consensus_3053#0      GCGGTGTCACGATCCCCTACCCGAACCTGCCGCAC---TTCTTCAAGAGCTGACTGTACT 2217
consensus_3053#1      GCGGTATCCTGTCGCCTCCGCAGGCCATGTCGAGCGGGCTGTACAGCAAGTTCCTGTACA 1202
                      ***** **  *   **    * *  * ** **  *    * * **  *  *  ****** 

consensus_3053#0      GGGTCAACCCGCTGACGTACCTCGTGTCGGGACTGATAACCAACGAGATGCACGAGCTGC 2277
consensus_3053#1      ACGTCAACCCGATCCGCTTTACGATCTCGCCGCTCATCGCCAACGAGCTGTACGGGCTTT 1262
                        ********* *    *      * ***   ** **  ******** ** *** ***  

consensus_3053#0      CCATCCGCTGTGGCGAGTCCGAGCTGGCTCGCTTCCAGCCGCCGTCGGGCCAGACGTGCA 2337
consensus_3053#1      CGATCCAGTGCGCTGCCAACGAGTTCAGCCGCTTCTCGCCTCCGAGTGGGCAGACGTGCG 1322
                      * ****  ** *  *    **** *    ******  *** ***   ** ********* 

consensus_3053#0      CGCAGTGGGCCGGCACCTTCCTCAACGCCTTTGGCGGCTACCTCGAGAACCCGGATGCGA 2397
consensus_3053#1      AGCAGTGGGCGGGCAACTACATCTCCAGAATTGGCGGGTATCTGGCCAACCCCTCGGCGA 1382
                       ********* **** ** * **  *    ******* ** ** *  *****    ****

consensus_3053#0      CGGCCGACTGCGGCTACTGCCAGTACTCGAGGGGCGACGACTTCTACGCTGGCCTCAACA 2457
consensus_3053#1      CGCAGGACTGCACGTACTGCACCTACGCCACCGGCGAGCAGTTCTACGCTCCTTTCGGTA 1442
                      **   ******   ******   *** * *  *****  * *********    **   *

consensus_3053#0      TCAAGTTCTCCGAGCGCGGCCGCAACATCGGCATCGTCATCGCCTTTGTCGCCTTCAACG 2517
consensus_3053#1      TCACGTGGGAAGAGCGCGGCCGCGACCTGGGCATCTTGATCGCGTTTGTGGCGTTCAACT 1502
                      *** **     ************ ** * ****** * ***** ***** ** ****** 

consensus_3053#0      CCATCGCCACGATCGT-CGCTTCGCGCTACATCAAGTACGCCAACCGCTAGGAGGCGTGC 2576
consensus_3053#1      GCGTCGCGACGATTGTGTTCACCAAGGTGT-TCAAGTTCAGCAACCGTT--GATCCACAC 1559
                       * **** ***** **   *  *  * *   ****** *  ****** *  **  *   *

consensus_3053#0      GAACGAACATTCCAAATTTTCCCACATAGATACCAGTCTTGTTACGCCTTAGCATCTTAA 2636
consensus_3053#1      GGCT--CTCTTGCATATATAGATTCGCA-ATTCCACCCTT-------------------- 1596
                      *        ** ** ** *     *  * ** ***  ***                    

consensus_3053#0      CGCCTTCCGTCGTTGTTAACTTTGACGTTTATAATAGATGTTGT 2680
consensus_3053#1      --------------------------------------------
                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)