These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1405 fasta sequence [CCAAGCTCAACCTCAAGCTCAAGCTCGCATTCTACGCCAGCAAATTCGTCCATTTCTCTCAACTTCTTCACCCAAAAACACATCTAATCCATAACCATGGCTGAGATCCGCCGAAAGCTCGTCATTGTCGGCGATGGTGCTTGTGGTAAAACCTGTTTGTTGATTGTTTTCTCCAAGGGCACTTTCCCCGAGGTCTACGTCCCCACCGTTTTCGAGAACTACGTCGCCGATGTCGAGGTTGACGGCAAGCACGTCGAGCTCGCCCTATGGGATACTGCCGGCCAGGAGGATTATGACCGTCTTCGACCTCTTTCTTACCCCGACTCCCACGTTATCCTGATCTGCTTCGCTGTTGACTCTCCCGACTCCCCCGACAACGTCCAGGAGAATTGGATCTCTGAGGTTCTGCACTTCTGCCAAGGTCTCCCTATCATCCTTGTTGGCTGCAAGAAGGATTTGCGATACGACCAGAAGATCATCGAGGAGCTCCGAAAGACCAGCCAGAAGCCCGTTTCCCCTGAGGAGGGTGAGGAGATCCGCAAGAAGATCGCCGCCTACAAGTACCTTGAGTGCTCAGCCAAGACCAACGAGGGCGTCCGTGAAGTATTCGAGCACGCTACTCGCGCTGCTCTGCTCTCACGAAGCACCCGTGGCAAGTCCCACAAGAAGTGTCTTGTTCTGTAAAGGGCCCATCGAAGCCCTCTGAACGCAGCCCACGCACACGTATCGTGGACCCTGCGTTATAATCCTTGTCGTCACAGTTCAACCTCAACTTGGTCCTCGGTAGCTCGGATAAAACGGGCTCGTGGCAGCCAAGAAGGCCAAATTTGTCGACATGCATCGGTTTTCTCGGAATCTGGAGTTTGATATCGTCTCGCTCATGTCTGGTCCATCGGCCTACGCGCCGGCCCTTCTCGCTGGATTGATGGTTTTCTGGTCGGCGGAGCCCATGGTTTCTTGGACCTTCTGAATCTCGCAGGGGGGTTTGCTATTACCGACAGATACCTCATCTATTTTATTATCACCACTGGCAGGCGAGCGGGACCTCTGTTTTATGTATGTGCTTGTCACGCGCGGGGAGGTGGGCCAGGTGTCTTTTTTTGTTGGGGCCATTGAGGAGGAGGAGTGACTCTCGTTCCTTGCTCTCCTGCCCAGTCTGTCAGTTGCAGGCTGATGGACGAGGAATCACTTGGGAGATGTTACAGGAGGCCAGGAGAGGCTTCGTGGACTGGTTACGGCGAGAGCGTTTGCGTCTGCTTGTGTGTGGATATGGGGTCCGGCTGGGGAAACCAAGTCGGATCGGGCCATAAATCTTTTCGTTTTTTCTCTTGGAGCCTCGAGACCGTTACTTAGACCATGGAGATGGGACATCTATTGCGTAGGGCCTGCCTGTTTAATCTCTTGA] [+] EMBL AK107382 [CCAAGCTCAACCTCAAGCTCAAGCTCGCATTCTACGCCAGCAAATTCGTCCATTTCTCTCAACTTCTTCACCCAAAAACACATCTAATCCATAACCATGGCTGAGATCCGCCGAAAGCTCGTCATTGTCGGCGATGGTGCTTGTGGTAAAACCTGTTTGTTGATTGTTTTCTCCAAGGGCACTTTCCCCGAGGTCTACGTCCCCACCGTTTTCGAGAACTACGTCGCCGATGTCGAGGTTGACGGCAAGCACGTCGAGCTCGCCCTATGGGATACTGCCGGCCAGGAGGATTATGACCGTCTTCGACCTCTTTCTTACCCCGACTCCCACGTTATCCTGATCTGCTTCGCTGTTGACTCTCCCGACTCCCCCGACAACGTCCAGGAGAATTGGATCTCTGAGGTTCTGCACTTCTGCCAAGGTCTCCCTATCATCCTTGTTGGCTGCAAGAAGGATTTGCGATACGACCAGAAGATCATCGAGGAGCTCCGAAAGACCAGCCAGAAGCCCGTTTCCCCTGAGGAGGGTGAGGAGATCCGCAAGAAGATCGCCGCCTACAAGTACCTTGAGTGCTCAGCCAAGACCAACGAGGGCGTCCGTGAAGTATTCGAGCACGCTACTCGCGCTGCTCTGCTCTCACGAAGCACCCGTGGCAAGTCCCACAAGAAGTGTCTTGTTCTGTAAAGGGCCCATCGAAGCCCTCTGAACGCAGCCCACGCACACGTATCGTGGACCCTGCGTTATAATCCTTGTCGTCACAGTTCAACCTCAACTTGGTCCTCGGTAGCTCGGATAAAACGGGCTCGTGGCAGCCAAGAAGGCCAAATTTGTCGACATGCATCGGTTTTCTCGGAATCTGGAGTTTGATATCGTCTCGCTCATGTCTGGTCCATCGGCCTACGCGCCGGCCCTTCTCGCTGGATTGATGGTTTTCTGGTCGGCGGAGCCCATGGTTTCTTGGACCTTCTGAATCTCGCAGGGGGGTTTGCTATTACCGACAGATACCTCATCTATTTTATTATCACCACTGGCAGGCGAGCGGGACCTCTGTTTTATGTATGTGCTTGTCACGCGCGGGGAGGTGGGCCAGGTGTCTTTTTTTGTTGGGGCCATTGAGGAGGAGGAGTGACTCTCGTTCCTTGCTCTCCTGCCCAGTCTGTCAGTTGCAGGCTGATGGACGAGGAATCACTTGGGAGATGTTACAGGAGGCCAGGAGAGGCTTCGTGGACTGGTTACGGCGAGAGCGTTTGCGTCTGCTTGTGTGTGGATATGGGGTCCGGCTGGGGAAACCAAGTCGGATCGGGCCATAAATCTTTTCGTTTTTTCTCTTGGAGCCTCGAGACCGTTACTTAGACCATGGAGATGGGACATCTATTGCGTAGGGCCTGCCTGTTTAATCTCTTGA] consensusID : consensus_3068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1099 fasta sequence [CTGCTGTTTGCTTCCCCAACCAGCTCCACCTCTGCACCACCACATCCACCACCACCACACCCACCGCCGCCTCCGCTCGTGCTTCTCGCAGCCCCAGCTTGCCGCCCGGCTGCCACGCTCAGCCCACAGAAGCCCTCCCCCGTCCCCGACCCCATCCCACGCGACACCATGGCCGAGATTCGACGAAAGCTTGTTATTGTCGGCGATGGCGCCTGTGGAAAGACGTGTCTGCTCATCGTCTTTTCCAAGGGCACTTTCCCCGAGGTCTACGTCCCCACCGTCTTCGAGAACTATGTCGCCGACGTTGAGGTGGACGGCAAGCACGTAGAGCTTGCCCTCTGGGATACCGCTGGCCAGGAAGATTACGACCGTCTCCGCCCTCTCTCCTACCCCGACTCGCACGTTATCCTCATCTGCTTCGCCGTCGACTCGCCCGACTCGCTTGACAATGTCCAGGAAAAGTGGATCTCCGAGGTTCTCCACTTCTGCCAGGGCCTTCCCATCATCCTCGTTGGATGCAAGAAGGACTTGCGCTTTGACCAGAAGACGATTGAGGAGCTGCACAAGACGTCGCAGAAGCCCGTCACACCCGAGCAGGCCGAGGATGTCCGCAAGAAGATCGGTGCCCAGAAGTACCTTGAGTGCTCAGCCAAGACAAACGAGGGTGTCCGAGAAGTGTTCGAGCACGCCACCCGCGCTGCTCTGCTGACCAGGAAAGAGAAGAAGACCAAGAAGTGCTTGATCTTGTAAGCACCCAATAGCTCAAATAAGGTGATTCTCCGCCCAGCCCGCGCCTTGTTGAGCTCCGACAAGAAACAAGACAAGCGGCTATTGGGTGTGTAATAGTCGTTTATTCGAGAAAGAGGGCAAGACGTGCAAATGGCCACTGCGTGAGCAGACGACTCGGAGACTTCTCCGGGCTGCTTCCGGCCCATCTCTCTCTTTCTCTCAATCTCTCTCTCTCTCTCTCATGGCACCTACACGAGGCGTTTACTGTGCTGGATCTTTTGTGTGTTTGGACCGTACATCATCTTGGGGTAGTTCATGATGAGGGTTATCTTCTCAGAGCGTGTGGAATCGAGATTGAGCAAATGGTAGG] [+] EMBL AK110781 [CTGCTGTTTGCTTCCCCAACCAGCTCCACCTCTGCACCACCACATCCACCACCACCACACCCACCGCCGCCTCCGCTCGTGCTTCTCGCAGCCCCAGCTTGCCGCCCGGCTGCCACGCTCAGCCCACAGAAGCCCTCCCCCGTCCCCGACCCCATCCCACGCGACACCATGGCCGAGATTCGACGAAAGCTTGTTATTGTCGGCGATGGCGCCTGTGGAAAGACGTGTCTGCTCATCGTCTTTTCCAAGGGCACTTTCCCCGAGGTCTACGTCCCCACCGTCTTCGAGAACTATGTCGCCGACGTTGAGGTGGACGGCAAGCACGTAGAGCTTGCCCTCTGGGATACCGCTGGCCAGGAAGATTACGACCGTCTCCGCCCTCTCTCCTACCCCGACTCGCACGTTATCCTCATCTGCTTCGCCGTCGACTCGCCCGACTCGCTTGACAATGTCCAGGAAAAGTGGATCTCCGAGGTTCTCCACTTCTGCCAGGGCCTTCCCATCATCCTCGTTGGATGCAAGAAGGACTTGCGCTTTGACCAGAAGACGATTGAGGAGCTGCACAAGACGTCGCAGAAGCCCGTCACACCCGAGCAGGCCGAGGATGTCCGCAAGAAGATCGGTGCCCAGAAGTACCTTGAGTGCTCAGCCAAGACAAACGAGGGTGTCCGAGAAGTGTTCGAGCACGCCACCCGCGCTGCTCTGCTGACCAGGAAAGAGAAGAAGACCAAGAAGTGCTTGATCTTGTAAGCACCCAATAGCTCAAATAAGGTGATTCTCCGCCCAGCCCGCGCCTTGTTGAGCTCCGACAAGAAACAAGACAAGCGGCTATTGGGTGTGTAATAGTCGTTTATTCGAGAAAGAGGGCAAGACGTGCAAATGGCCACTGCGTGAGCAGACGACTCGGAGACTTCTCCGGGCTGCTTCCGGCCCATCTCTCTCTTTCTCTCAATCTCTCTCTCTCTCTCTCATGGCACCTACACGAGGCGTTTACTGTGCTGGATCTTTTGTGTGTTTGGACCGTACATCATCTTGGGGTAGTTCATGATGAGGGTTATCTTCTCAGAGCGTGTGGAATCGAGATTGAGCAAATGGTAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3068#0 ------------------------------------------------------------ consensus_3068#1 CTGCTGTTTGCTTCCCCAACCAGCTCCACCTCTGCACCACCACATCCACCACCACCACAC 60 consensus_3068#0 ----------CCAAGCTCAACCTCAAGCTCAAGCTCGCATTCTACGCCAGCAAATTCGTC 50 consensus_3068#1 CCACCGCCGCCTCCGCTCGTGCTTCT-CGCAGCCCCAGCTTGCCGCCCGGCTGCCACGCT 119 * **** ** * ** * * ** ** ** ** consensus_3068#0 CATTTCTCTCAA---CTTCTTCACCCAAAAACACATCTAATCCATAACCATGGCTGAGAT 107 consensus_3068#1 CAGCCCACAGAAGCCCTCCCCCGTCCCCGACCCCATCCCACGCGACACCATGGCCGAGAT 179 ** * * ** ** * * ** * * **** * * ******** ***** consensus_3068#0 CCGCCGAAAGCTCGTCATTGTCGGCGATGGTGCTTGTGGTAAAACCTGTTTGTTGATTGT 167 consensus_3068#1 TCGACGAAAGCTTGTTATTGTCGGCGATGGCGCCTGTGGAAAGACGTGTCTGCTCATCGT 239 ** ******** ** ************** ** ***** ** ** *** ** * ** ** consensus_3068#0 TTTCTCCAAGGGCACTTTCCCCGAGGTCTACGTCCCCACCGTTTTCGAGAACTACGTCGC 227 consensus_3068#1 CTTTTCCAAGGGCACTTTCCCCGAGGTCTACGTCCCCACCGTCTTCGAGAACTATGTCGC 299 ** ************************************** *********** ***** consensus_3068#0 CGATGTCGAGGTTGACGGCAAGCACGTCGAGCTCGCCCTATGGGATACTGCCGGCCAGGA 287 consensus_3068#1 CGACGTTGAGGTGGACGGCAAGCACGTAGAGCTTGCCCTCTGGGATACCGCTGGCCAGGA 359 *** ** ***** ************** ***** ***** ******** ** ******** consensus_3068#0 GGATTATGACCGTCTTCGACCTCTTTCTTACCCCGACTCCCACGTTATCCTGATCTGCTT 347 consensus_3068#1 AGATTACGACCGTCTCCGCCCTCTCTCCTACCCCGACTCGCACGTTATCCTCATCTGCTT 419 ***** ******** ** ***** ** *********** *********** ******** consensus_3068#0 CGCTGTTGACTCTCCCGACTCCCCCGACAACGTCCAGGAGAATTGGATCTCTGAGGTTCT 407 consensus_3068#1 CGCCGTCGACTCGCCCGACTCGCTTGACAATGTCCAGGAAAAGTGGATCTCCGAGGTTCT 479 *** ** ***** ******** * ***** ******** ** ******** ******** consensus_3068#0 GCACTTCTGCCAAGGTCTCCCTATCATCCTTGTTGGCTGCAAGAAGGATTTGCGATACGA 467 consensus_3068#1 CCACTTCTGCCAGGGCCTTCCCATCATCCTCGTTGGATGCAAGAAGGACTTGCGCTTTGA 539 *********** ** ** ** ******** ***** *********** ***** * ** consensus_3068#0 CCAGAAGATCATCGAGGAGCTCCGAAAGACCAGCCAGAAGCCCGTTTCCCCTGAGGAGGG 527 consensus_3068#1 CCAGAAGACGATTGAGGAGCTGCACAAGACGTCGCAGAAGCCCGTCACACCCGAGCAGGC 599 ******** ** ******** * ***** *********** * ** *** *** consensus_3068#0 TGAGGAGATCCGCAAGAAGATCGCCGCCTACAAGTACCTTGAGTGCTCAGCCAAGACCAA 587 consensus_3068#1 CGAGGATGTCCGCAAGAAGATCGGTGCCCAGAAGTACCTTGAGTGCTCAGCCAAGACAAA 659 ***** *************** *** * ************************** ** consensus_3068#0 CGAGGGCGTCCGTGAAGTATTCGAGCACGCTACTCGCGCTGCTCTGCTCTCACGAAGCAC 647 consensus_3068#1 CGAGGGTGTCCGAGAAGTGTTCGAGCACGCCACCCGCGCTGCTCTGCTG--ACCAGGAAA 717 ****** ***** ***** *********** ** ************** ** * * * consensus_3068#0 CCGTGGCAAGTCCCACAAGAAGTGTCTTGTTCTGTAAAGGGCCCATCGAAGCCCTCTGAA 707 consensus_3068#1 GAGAAGAAGACC----AAGAAGTGCTTGATCTTGTAAGCACCCAAT---AGCTCAAATAA 770 * * * * ******** * * ***** ** ** *** * ** consensus_3068#0 CGCAGCCCACGCACACGTATCGTGGACCCTGCGTTATAATCCTTGTCGTCACAGTTCAAC 767 consensus_3068#1 GGTGATTCTC---CGCCCAGCCCGCGCCTT--GTTGAGCTCCGACAAGAAACAAGACAAG 825 * * * * * * * * ** * *** *** * *** *** consensus_3068#0 CT-CAACTTGGTCCTCGGTAGCTCGGATAAAACGGGCTCGTGGCAGCCAAGAAGGCCAAA 826 consensus_3068#1 CGGCTATTGGGTGTGTAATAG-TCGTTTA-------TTCGAGA-----AAGAGGGCAAGA 872 * * * * *** *** *** ** *** * **** *** * * consensus_3068#0 TTTGTCGACATGCATCG-GTTTTCTCGGAATCTGGAGTTTGATATCGTCTCGCTCATGTC 885 consensus_3068#1 CGTGCAAATGGCCACTGCGTGAGCAGACGACTCGGAGACTTCT-CCGGGCTGCTTCCGGC 931 ** * ** * ** * * **** * * ** *** * * consensus_3068#0 TGGTCCATCGGCCTACGCGCCGGCCCTTCTCGCTGGAT-TGATGGTTTTCTGGTCGGCGG 944 consensus_3068#1 CCATCTCTC--TCTTTCTCTCAATCTCTCTCTCTCTCTCTCATGGCACC----TACACGA 985 ** ** ** * * **** ** * * **** * ** consensus_3068#0 AGCCCATGGTTTCTTGGACCTTCTGAATCTCGCAGGGGGGTTTGCTATTACCGACAGATA 1004 consensus_3068#1 GGCGTTTACTGTGCTGGATCTTTTGTGTGTTT-----GGACCGTACATCATCTTGGGGTA 1040 ** * * * **** *** ** * * ** ** * * * ** consensus_3068#0 CCTCATCTATTTTATTATCACCACTGGCAGGCGAGCGGGACCTCTGTTTTATGTATGTGC 1064 consensus_3068#1 GTTCATGATGAGGGTTATCTTCTCAGA---GCGTGTGGAA--TCGAGATTGAGCAAATGG 1095 **** ***** * * * *** * ** * ** ** * * ** consensus_3068#0 TTGTCACGCGCGGGGAGGTGGGCCAGGTGTCTTTTTTTGTTGGGGCCATTGAGGAGGAGG 1124 consensus_3068#1 TAGG-------------------------------------------------------- 1099 * * consensus_3068#0 AGTGACTCTCGTTCCTTGCTCTCCTGCCCAGTCTGTCAGTTGCAGGCTGATGGACGAGGA 1184 consensus_3068#1 ------------------------------------------------------------ consensus_3068#0 ATCACTTGGGAGATGTTACAGGAGGCCAGGAGAGGCTTCGTGGACTGGTTACGGCGAGAG 1244 consensus_3068#1 ------------------------------------------------------------ consensus_3068#0 CGTTTGCGTCTGCTTGTGTGTGGATATGGGGTCCGGCTGGGGAAACCAAGTCGGATCGGG 1304 consensus_3068#1 ------------------------------------------------------------ consensus_3068#0 CCATAAATCTTTTCGTTTTTTCTCTTGGAGCCTCGAGACCGTTACTTAGACCATGGAGAT 1364 consensus_3068#1 ------------------------------------------------------------ consensus_3068#0 GGGACATCTATTGCGTAGGGCCTGCCTGTTTAATCTCTTGA 1405 consensus_3068#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||