These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3097#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1534 fasta sequence [CAAGCCGAAGCTAGAAACTTAGAAAGAGCGGAGAGGGTGAGGGAGAAGGAGAGAGCTCGATCGGCGGCAATGGACGAGTGGGAGGAGCTTGCGTGGAGAGTGCCCGAGACGCTCATGCTAGTCAGCTGCGAGATGGAAGCCACCAGGTTGATCGAAGTCGCCCACAGCAATCTACAAGTGCGCGGAACTTTGTTCCGCCGGATACACTTGGGCATGCCGGCGGCCATCGCCATGAACCTCTTCGGCGACCCGGCCGCCGAAGGAGTCATCCCCACCGAGATCCTCGAGGAGGCCCGCCGCGAGATCTCGCAGAGCGGCGCTCGCCACGGGAAGACCAGGCACGTCTTCGCTCGCTACGTCGTCGCGCACCTCGGCGTCCAGCAAGATGACCCGGCGTACCGCAGCTGGGAGGTCCACCACCAGGACGCCATCCGCTTCACCGATAAGGCGCTGGAGAAGGTTAGCGAAGCCGCGTCGCATGCCGAGGCGGCCAAGGACGCCGTCGACATCGCCGAGACCCTCCTCTCCCAGCCCCAGCCCCCGCTCCAGCTGTGGGCAGAGTGGACGTCGGCGGCCGAGAAGCTCGTGGACCAGGCCGCTTTGGAGGCCACCCTGGCGCTGGACGAGGTGCTCCGGGCGCGCCAATCTGTTGCTCTCGAGTTCTTCGACGCCGTAGCGATTCTGCGTCGCGGAAGAGCTCCACCGGCGGCGGTGGACAAGTGGTGGCAAGAGATTGAGAGGACACTCCCTGGAGCCTTCCTGCTCGTCGCCACCGGCGGGCTGAAAGCGCTCAGGTTGATCCGAGATGCCCATGGCAAGCTCCAGGAACGCGTCGCTATGCTGCGCGTGAACTTACGCCAGGAGACGCCGGCGGCGGCCGTCCCCGTCGAAGGAAATTCTGCCTACCAGCTGGATCCCGAGGGAATCTGCCCCACCGTGGCCCTTGAGGACGCCCGCCGCGAGATCTCGCAGAGCACCGTTCTCCACGCGAAGACAAGGCACGTCCTCGCTCGCTACGTCGCGCACCTCGGCGCCCAGCAGGATGACCCGGCGTACCGCAGCTGGGACGTCCACCACCAGGAAGCCGTTGACCACATCAGCAAGGCGCTGAAGAGGGTGATCGATACGGTGTCAAACGCCGAGGCGGGCAAGGTCGCCCTCGTCATCATGGGTAGCGTTGCCTACAGGTGCCCGCTGTGGGATGTGTGGGCATCGGAGGCCGAAAAATTCACGGCAGTCGCTGCCCTCGAGGCCACTATGGCAACGAATGAGATGCGCTGCGCTCAGGAAGCCGTTGCTCAGGAGTTGTCCGATGCCTGGACGATTCTGTTGTCAAGGCGAAGAAACTGAACTAGCTGCACCGGCGCATGGTGAACATACGGCTCAGATTTGCTACTGATCTCCACTTTTGCTGTTCTCTTTCAGCTGAAATGAAGTCCTATACTCCTTTTTTCTACTGGAAATGGGAAGGACGACTTTGGTCCTCTGATTCTTCAAGAGTTCTAGTTGTAGCAATACATTAAGACTTAGTACC] [+] EMBL AK107517 [CAAGCCGAAGCTAGAAACTTAGAAAGAGCGGAGAGGGTGAGGGAGAAGGAGAGAGCTCGATCGGCGGCAATGGACGAGTGGGAGGAGCTTGCGTGGAGAGTGCCCGAGACGCTCATGCTAGTCAGCTGCGAGATGGAAGCCACCAGGTTGATCGAAGTCGCCCACAGCAATCTACAAGTGCGCGGAACTTTGTTCCGCCGGATACACTTGGGCATGCCGGCGGCCATCGCCATGAACCTCTTCGGCGACCCGGCCGCCGAAGGAGTCATCCCCACCGAGATCCTCGAGGAGGCCCGCCGCGAGATCTCGCAGAGCGGCGCTCGCCACGGGAAGACCAGGCACGTCTTCGCTCGCTACGTCGTCGCGCACCTCGGCGTCCAGCAAGATGACCCGGCGTACCGCAGCTGGGAGGTCCACCACCAGGACGCCATCCGCTTCACCGATAAGGCGCTGGAGAAGGTTAGCGAAGCCGCGTCGCATGCCGAGGCGGCCAAGGACGCCGTCGACATCGCCGAGACCCTCCTCTCCCAGCCCCAGCCCCCGCTCCAGCTGTGGGCAGAGTGGACGTCGGCGGCCGAGAAGCTCGTGGACCAGGCCGCTTTGGAGGCCACCCTGGCGCTGGACGAGGTGCTCCGGGCGCGCCAATCTGTTGCTCTCGAGTTCTTCGACGCCGTAGCGATTCTGCGTCGCGGAAGAGCTCCACCGGCGGCGGTGGACAAGTGGTGGCAAGAGATTGAGAGGACACTCCCTGGAGCCTTCCTGCTCGTCGCCACCGGCGGGCTGAAAGCGCTCAGGTTGATCCGAGATGCCCATGGCAAGCTCCAGGAACGCGTCGCTATGCTGCGCGTGAACTTACGCCAGGAGACGCCGGCGGCGGCCGTCCCCGTCGAAGGAAATTCTGCCTACCAGCTGGATCCCGAGGGAATCTGCCCCACCGTGGCCCTTGAGGACGCCCGCCGCGAGATCTCGCAGAGCACCGTTCTCCACGCGAAGACAAGGCACGTCCTCGCTCGCTACGTCGCGCACCTCGGCGCCCAGCAGGATGACCCGGCGTACCGCAGCTGGGACGTCCACCACCAGGAAGCCGTTGACCACATCAGCAAGGCGCTGAAGAGGGTGATCGATACGGTGTCAAACGCCGAGGCGGGCAAGGTCGCCCTCGTCATCATGGGTAGCGTTGCCTACAGGTGCCCGCTGTGGGATGTGTGGGCATCGGAGGCCGAAAAATTCACGGCAGTCGCTGCCCTCGAGGCCACTATGGCAACGAATGAGATGCGCTGCGCTCAGGAAGCCGTTGCTCAGGAGTTGTCCGATGCCTGGACGATTCTGTTGTCAAGGCGAAGAAACTGAACTAGCTGCACCGGCGCATGGTGAACATACGGCTCAGATTTGCTACTGATCTCCACTTTTGCTGTTCTCTTTCAGCTGAAATGAAGTCCTATACTCCTTTTTTCTACTGGAAATGGGAAGGACGACTTTGGTCCTCTGATTCTTCAAGAGTTCTAGTTGTAGCAATACATTAAGACTTAGTACC] consensusID : consensus_3097#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1512 fasta sequence [CACACACGCGCGCGGAAAACACTCCCAATCCCAAACCGAAGCGAGAAAGAGCTCGAGAGGGAGAGATCGATCGGCGGTGCCGGCCGCCGGCGATGGACGAGTGGGAGGAGCTGGCGCGGACAGTGCCGGCGACGCTCATGCAAGTCGGCTCCGGGATGGAAGCCGTCAGGAAGATCCAGGTCGCCCACAGGAAGATCCAAGGGCGCGCTGGTTTGATGCGCAACATACGCTTCGGGATGCCGGCGGCCATCGCCATGAGCCTCTTCGACGACCCGGCCCCCGTCGGAGTTTGCCCCACCGTGACCCTCGAGGAGGCCCGCTGCGAGATCTCGCGGGGCGCCGCTCGCCACGCGATGGCCGACCACGTCTTCGTTCGCTACGTCGAGCTCCTCGGCATCCAGCACGAGCCGCCGTGCACCAGCAGGGACACCCACCACCGGGAGGCCATCCGCTTCACCGCCATGGCCCTGGAGAAGGTCAGGGAAGCCGCGTCGCTTGCAGAGGCGGCCAAGGACGCCGTCGACATCGCCGAGACGCTCCTCCCGCAGCCCGAGCTGAAGATGGAGTGGGCGTTGGCGGCCCAGGACCTCGCGGAACGCGCCGACTACGAAGCCACCCAGGCGCTGGAGTTTGTGAAACGGGCGCGCGACGTCGTCGCTCTCGAGTTCTTCGACACCTGGAAGATTCTGCGTCGCGGGAGAGCTCGATCGGCGGAGATGAAGGAGTGGAGAGAGCTAGCGCTGAAAGTGCCGGGAACCATCATGCTCATCGGCGACGCCGAGCTGGAAACCCTCGAGTTGATCCAAGCCGCCGTCAGCAAGTTCCAGAAGCATGTCGAGTTGCTGCAAGAGGTACGCCATGGGACGGCGACGGCCACCGCCGTCGACAACTTCACCGACCCGGACCCCGAGGGAGCCTTGCCCACCGAGCTCCTCGAGAACGCACGCCGCGGGATGTCCAAGAGCGCCGTTCGCCATGCGAAGGCCCACCACATCTTCGCTCGCTACGCCGCGTTCCTCGGCATCCAAGGCGACGAGGAGTACCGCAGCTGGGACAACAAGCACCAGGAAGCCGCCGGCAGCATGGTCGCGGCGCTGAAGAAAGTCATCGACGCCGTCTCGGATGCTGAGGCAGCCAAGGACGCCGTCGCCATGGTCGGGATCCTCCCCTACCAGTGCCCGCTGTGGGAATTGTGGGCGTTGAGGGCGCAGAACCAGACCTCCTTGTCCTCCTTCAACGCCACCCTCGCGATACTAGACGTGCGACAGGCGCGCGAGGCCTTTTTTGTGGAGGTCTTACGCGCCTGGTTGATTCTGCGTCGCTATGGATCTCTTCAACTCCTGGATGATTCTGCATCGCTCTGGAGTTCCTCGACGCCTGCATGATACGTTGACACCGCGTCGCGAAGCACGCAGGTTACCCGATCGAGCTAGCTTGGTAATCGATCGATTGGTGGACTCGAAATTCTTGATCAGTTTGAAAACAACCACTTGGATGTTTCTGTTTCTTCTG] [+] EMBL AK108577 [CACACACGCGCGCGGAAAACACTCCCAATCCCAAACCGAAGCGAGAAAGAGCTCGAGAGGGAGAGATCGATCGGCGGTGCCGGCCGCCGGCGATGGACGAGTGGGAGGAGCTGGCGCGGACAGTGCCGGCGACGCTCATGCAAGTCGGCTCCGGGATGGAAGCCGTCAGGAAGATCCAGGTCGCCCACAGGAAGATCCAAGGGCGCGCTGGTTTGATGCGCAACATACGCTTCGGGATGCCGGCGGCCATCGCCATGAGCCTCTTCGACGACCCGGCCCCCGTCGGAGTTTGCCCCACCGTGACCCTCGAGGAGGCCCGCTGCGAGATCTCGCGGGGCGCCGCTCGCCACGCGATGGCCGACCACGTCTTCGTTCGCTACGTCGAGCTCCTCGGCATCCAGCACGAGCCGCCGTGCACCAGCAGGGACACCCACCACCGGGAGGCCATCCGCTTCACCGCCATGGCCCTGGAGAAGGTCAGGGAAGCCGCGTCGCTTGCAGAGGCGGCCAAGGACGCCGTCGACATCGCCGAGACGCTCCTCCCGCAGCCCGAGCTGAAGATGGAGTGGGCGTTGGCGGCCCAGGACCTCGCGGAACGCGCCGACTACGAAGCCACCCAGGCGCTGGAGTTTGTGAAACGGGCGCGCGACGTCGTCGCTCTCGAGTTCTTCGACACCTGGAAGATTCTGCGTCGCGGGAGAGCTCGATCGGCGGAGATGAAGGAGTGGAGAGAGCTAGCGCTGAAAGTGCCGGGAACCATCATGCTCATCGGCGACGCCGAGCTGGAAACCCTCGAGTTGATCCAAGCCGCCGTCAGCAAGTTCCAGAAGCATGTCGAGTTGCTGCAAGAGGTACGCCATGGGACGGCGACGGCCACCGCCGTCGACAACTTCACCGACCCGGACCCCGAGGGAGCCTTGCCCACCGAGCTCCTCGAGAACGCACGCCGCGGGATGTCCAAGAGCGCCGTTCGCCATGCGAAGGCCCACCACATCTTCGCTCGCTACGCCGCGTTCCTCGGCATCCAAGGCGACGAGGAGTACCGCAGCTGGGACAACAAGCACCAGGAAGCCGCCGGCAGCATGGTCGCGGCGCTGAAGAAAGTCATCGACGCCGTCTCGGATGCTGAGGCAGCCAAGGACGCCGTCGCCATGGTCGGGATCCTCCCCTACCAGTGCCCGCTGTGGGAATTGTGGGCGTTGAGGGCGCAGAACCAGACCTCCTTGTCCTCCTTCAACGCCACCCTCGCGATACTAGACGTGCGACAGGCGCGCGAGGCCTTTTTTGTGGAGGTCTTACGCGCCTGGTTGATTCTGCGTCGCTATGGATCTCTTCAACTCCTGGATGATTCTGCATCGCTCTGGAGTTCCTCGACGCCTGCATGATACGTTGACACCGCGTCGCGAAGCACGCAGGTTACCCGATCGAGCTAGCTTGGTAATCGATCGATTGGTGGACTCGAAATTCTTGATCAGTTTGAAAACAACCACTTGGATGTTTCTGTTTCTTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3097#0 -------------------------CAAGCCGAAGCTAGAAACTTAGAAAGAGCG-GAGA 34 consensus_3097#1 CACACACGCGCGCGGAAAACACTCCCAATCCCAAACC--GAAGCGAGAAAGAGCTCGAGA 58 *** ** ** * ** ********* **** consensus_3097#0 GGGTGAGGGAGAAGGAGAGAGCTCGATCGGCGGCAATGGACGAGTGGGAGGAGCTTGCGT 94 consensus_3097#1 GGGAGAGATCGATCGGCGGTGC-CGGCCGCCGGCGATGGACGAGTGGGAGGAGCTGGCGC 117 *** *** ** * * ** ** ** **** ******************** *** consensus_3097#0 GGAGAGTGCCCGAGACGCTCATGCTAGTCAGCTGCGAGATGGAAGCCACCAGGTTGATCG 154 consensus_3097#1 GGACAGTGCCGGCGACGCTCATGCAAGTCGGCTCCGGGATGGAAGCCGTCAGGAAGATCC 177 *** ****** * *********** **** *** ** ********** **** **** consensus_3097#0 AAGTCGCCCACAGCAATCTACAAGTGCGCGGAACTTTGTTCCGCCGGATACACTTGGGCA 214 consensus_3097#1 AGGTCGCCCACAGGAAGATCCAAGGGCGCGCTGGTTTGATGCGCAACATACGCTTCGGGA 237 * *********** ** * **** ***** **** * *** **** *** ** * consensus_3097#0 TGCCGGCGGCCATCGCCATGAACCTCTTCGGCGACCCGGCCGCCGAAGGAGTCATCCCCA 274 consensus_3097#1 TGCCGGCGGCCATCGCCATGAGCCTCTTCGACGACCCGGCCCCCGTCGGAGTTTGCCCCA 297 ********************* ******** ********** *** ***** ***** consensus_3097#0 CCGAGATCCTCGAGGAGGCCCGCCGCGAGATCTCGCAGAGCGGCGCTCGCCACGGGAAGA 334 consensus_3097#1 CCGTGACCCTCGAGGAGGCCCGCTGCGAGATCTCGCGGGGCGCCGCTCGCCACGCGATGG 357 *** ** **************** ************ * *** *********** ** * consensus_3097#0 CCAGGCACGTCTTCGCTCGCTACGTCGTCGCGCACCTCGGCGTCCAGCAAGATGACCCGG 394 consensus_3097#1 CCGACCACGTCTTCGTTCGCTACGTCGA---GCTCCTCGGCATCCAGCA---CGAGCCGC 411 ** ********** *********** ** ******* ******* ** *** consensus_3097#0 CGTACCGCAGCTGGGAGGTCCACCACCAGGACGCCATCCGCTTCACCGATAAGGCGCTGG 454 consensus_3097#1 CGTGCACCAGCAGGGACACCCACCACCGGGAGGCCATCCGCTTCACCGCCATGGCCCTGG 471 *** * **** **** ******** *** **************** * *** **** consensus_3097#0 AGAAGGTTAGCGAAGCCGCGTCGCATGCCGAGGCGGCCAAGGACGCCGTCGACATCGCCG 514 consensus_3097#1 AGAAGGTCAGGGAAGCCGCGTCGCTTGCAGAGGCGGCCAAGGACGCCGTCGACATCGCCG 531 ******* ** ************* *** ******************************* consensus_3097#0 AGACCCTCCTCTCCCAGCCCCAGCCCCCGCTCCAGCTGTGGGCAGAGTGGACGTCGGCGG 574 consensus_3097#1 AGACGCTCCTCCCGCAGCCCGAGC------------TGAAGATGGAGTGGGCGTTGGCGG 579 **** ****** * ****** *** ** * ****** *** ***** consensus_3097#0 CCGAGAAGCTCGTGGACCAGGCCGCTTTGGAGGCCACCCTGGCGCTGGACGAGGTGCTCC 634 consensus_3097#1 CCCAGGACCTCGCGGAACGCGCCGACTACGAAGCCACCCAGGCGCTGGAGTTTGTGAAAC 639 ** ** * **** *** * **** * ** ******* ********* *** * consensus_3097#0 GGGCGCGCCAATCTGTTGCTCTCGAGTTCTTCGACGCCGTAGCGATTCTGCGTCGCGGAA 694 consensus_3097#1 GGGCGCGCGACGTCGTCGCTCTCGAGTTCTTCGACACCTGGAAGATTCTGCGTCGCGGGA 699 ******** * ** ****************** ** *************** * consensus_3097#0 GAGCTCCACCGGCGGCGGTGGACAAGTGGTGGCAAGAGATTGAGAGGACACTCCCTGGAG 754 consensus_3097#1 GAGCTCGATCGGCGGAGATG---AAGGAGTGGAGAGAGCTAGCGCTGAAAGTGCCGGGAA 756 ****** * ****** * ** *** **** **** * * * ** * * ** *** consensus_3097#0 CCTTCCTGCTCGTCGCCACCGGCGGGCTGAAAGCGCTCAGGTTGATCCGAGATGCCCATG 814 consensus_3097#1 CCATCATGCTCATCGGCGACGCCGAGCTGGAAACCCTCGAGTTGATCCAAGCCGCCGTCA 816 ** ** ***** *** * ** ** **** ** * *** ******** ** *** consensus_3097#0 GCAAGCTCCAGGAACGCGTCGCTATGCTGCGCGTGAACTTACGCCAGGAGACGCCGGCGG 874 consensus_3097#1 GCAAGTTCCAGAAGCATGTCGAGTTGCTGCAAGAGG---TACGCCATGGGA---CGGCGA 870 ***** ***** * * **** ****** * * ******* * ** ***** consensus_3097#0 CGGCCGTCCCCGTCGAAGGAAATTCTGCCTACCAGCTGGATCCCGAGGGAATCTGCCCCA 934 consensus_3097#1 CGGCCACCGCCGTCGAC---AACTTCACCGACC---CGGACCCCGAGGGAGCCTTGCCCA 924 ***** * ******* ** * ** *** *** ********* ** **** consensus_3097#0 CCGTGGCCCTTGAGGACGCCCGCCGCGAGATCTCGCAGAGCACCGTTCTCCACGCGAAGA 994 consensus_3097#1 CCGAGCTCCTCGAGAACGCACGCCGCGGGATGTCCAAGAGCGCCGTTCGCCATGCGAAGG 984 *** * *** *** **** ******* *** ** ***** ****** *** ****** consensus_3097#0 CAAGGCACGTCCTCGCTCGCTACGTCGCGCACCTCGGCGCCCAGCAGGATGACCCGGCGT 1054 consensus_3097#1 CCCACCACATCTTCGCTCGCTACGCCGCGTTCCTCGGCATCC---AAGGCGACGAGGAGT 1041 * *** ** ************ **** ******* ** * * *** ** ** consensus_3097#0 ACCGCAGCTGGGACGTCCACCACCAGGAAGCCGTTGACCACATCAGCAAGGCGCTGAAGA 1114 consensus_3097#1 ACCGCAGCTGGGACAACAAGCACCAGGAAGCCGCCGGCAGCATGGTCGCGGCGCTGAAGA 1101 ************** * * ************* * * *** * *********** consensus_3097#0 GGGTGATCGATACGGTGTCAAACGCCGAGGCGGGCAAGGTCGCCCTCGTCATCATGGGTA 1174 consensus_3097#1 AAGTCATCGACGCCGTCTCGGATGCTGAGGCAGCCAAGGACGCCGTCGCCATGGTCGGGA 1161 ** ***** * ** ** * ** ***** * ***** **** *** *** * ** * consensus_3097#0 GCGTTGCCTACAGGTGCCCGCTGTGGGATGTGTGGGCATCGGAGGCCGAAAAATTCACGG 1234 consensus_3097#1 TCCTCCCCTACCAGTGCCCGCTGTGGGAATTGTGGGCGTTGAGGGCGCAGAACCAGACCT 1221 * * ***** *************** ******* * * *** * ** ** consensus_3097#0 CAGTCGCTGCCCTCGAGGCCACTATGGCAACGAATGAGATGCGCTGCGCTCAGGAAGCCG 1294 consensus_3097#1 CCTTGTCCTCCTTCAACGCCACCCTCGCGATACTAGACGTGCGACAGGCGCGCGAGGCCT 1281 * * * ** ** * ***** * ** * ** **** ** * ** *** consensus_3097#0 TTGCTCAGGAGTTGTCCGATGCCTGGACGATTCTGTTGTCAAGGCGAAGAAACTGAACTA 1354 consensus_3097#1 TTTTTGTGGAGGTCTTACGCGCCTGGTTGATTCTGC-GTCGCTATGGATCTCTTCAACTC 1340 ** * **** * * ****** ******* *** * * * **** consensus_3097#0 GCTGCACCGGCGCATGGTGAACATACGGCTCAGATTTGCTACTGATCTCCACTTTTGCTG 1414 consensus_3097#1 ------CTGGATGATTCTGCAT---CGCTCTGGAGTTCCT--CGACGCCTGCATGATACG 1389 * ** ** ** * ** ** ** ** ** * * * * consensus_3097#0 TTCTCTTTCAGCTGAAATGAAGTCCTAT-ACTCCTTTTTTCTA--CTGGAAATGGGAAGG 1471 consensus_3097#1 TTGACACCGCGTCGCGAAGCACGCAGGTTACCCGATCGAGCTAGCTTGGTAATCGATCGA 1449 ** * * * * * * * * ** * * *** *** *** * * consensus_3097#0 ACGACTTTGGTCCTCTGATTCTTCAAGAGTTCTAGTTGTAGCAATACATTAAGACTTAGT 1531 consensus_3097#1 TTGG---TGGACTCGAAATTCTTGATCAGTTTGAA----AACAACCACTTGGATGTTTCT 1502 * *** * ****** * **** * * *** ** ** * consensus_3097#0 ACC------- 1534 consensus_3097#1 GTTTCTTCTG 1512 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||