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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3097#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1534 fasta sequence
[CAAGCCGAAGCTAGAAACTTAGAAAGAGCGGAGAGGGTGAGGGAGAAGGAGAGAGCTCGATCGGCGGCAATGGACGAGTGGGAGGAGCTTGCGTGGAGAGTGCCCGAGACGCTCATGCTAGTCAGCTGCGAGATGGAAGCCACCAGGTTGATCGAAGTCGCCCACAGCAATCTACAAGTGCGCGGAACTTTGTTCCGCCGGATACACTTGGGCATGCCGGCGGCCATCGCCATGAACCTCTTCGGCGACCCGGCCGCCGAAGGAGTCATCCCCACCGAGATCCTCGAGGAGGCCCGCCGCGAGATCTCGCAGAGCGGCGCTCGCCACGGGAAGACCAGGCACGTCTTCGCTCGCTACGTCGTCGCGCACCTCGGCGTCCAGCAAGATGACCCGGCGTACCGCAGCTGGGAGGTCCACCACCAGGACGCCATCCGCTTCACCGATAAGGCGCTGGAGAAGGTTAGCGAAGCCGCGTCGCATGCCGAGGCGGCCAAGGACGCCGTCGACATCGCCGAGACCCTCCTCTCCCAGCCCCAGCCCCCGCTCCAGCTGTGGGCAGAGTGGACGTCGGCGGCCGAGAAGCTCGTGGACCAGGCCGCTTTGGAGGCCACCCTGGCGCTGGACGAGGTGCTCCGGGCGCGCCAATCTGTTGCTCTCGAGTTCTTCGACGCCGTAGCGATTCTGCGTCGCGGAAGAGCTCCACCGGCGGCGGTGGACAAGTGGTGGCAAGAGATTGAGAGGACACTCCCTGGAGCCTTCCTGCTCGTCGCCACCGGCGGGCTGAAAGCGCTCAGGTTGATCCGAGATGCCCATGGCAAGCTCCAGGAACGCGTCGCTATGCTGCGCGTGAACTTACGCCAGGAGACGCCGGCGGCGGCCGTCCCCGTCGAAGGAAATTCTGCCTACCAGCTGGATCCCGAGGGAATCTGCCCCACCGTGGCCCTTGAGGACGCCCGCCGCGAGATCTCGCAGAGCACCGTTCTCCACGCGAAGACAAGGCACGTCCTCGCTCGCTACGTCGCGCACCTCGGCGCCCAGCAGGATGACCCGGCGTACCGCAGCTGGGACGTCCACCACCAGGAAGCCGTTGACCACATCAGCAAGGCGCTGAAGAGGGTGATCGATACGGTGTCAAACGCCGAGGCGGGCAAGGTCGCCCTCGTCATCATGGGTAGCGTTGCCTACAGGTGCCCGCTGTGGGATGTGTGGGCATCGGAGGCCGAAAAATTCACGGCAGTCGCTGCCCTCGAGGCCACTATGGCAACGAATGAGATGCGCTGCGCTCAGGAAGCCGTTGCTCAGGAGTTGTCCGATGCCTGGACGATTCTGTTGTCAAGGCGAAGAAACTGAACTAGCTGCACCGGCGCATGGTGAACATACGGCTCAGATTTGCTACTGATCTCCACTTTTGCTGTTCTCTTTCAGCTGAAATGAAGTCCTATACTCCTTTTTTCTACTGGAAATGGGAAGGACGACTTTGGTCCTCTGATTCTTCAAGAGTTCTAGTTGTAGCAATACATTAAGACTTAGTACC]
[+] EMBL AK107517 [CAAGCCGAAGCTAGAAACTTAGAAAGAGCGGAGAGGGTGAGGGAGAAGGAGAGAGCTCGATCGGCGGCAATGGACGAGTGGGAGGAGCTTGCGTGGAGAGTGCCCGAGACGCTCATGCTAGTCAGCTGCGAGATGGAAGCCACCAGGTTGATCGAAGTCGCCCACAGCAATCTACAAGTGCGCGGAACTTTGTTCCGCCGGATACACTTGGGCATGCCGGCGGCCATCGCCATGAACCTCTTCGGCGACCCGGCCGCCGAAGGAGTCATCCCCACCGAGATCCTCGAGGAGGCCCGCCGCGAGATCTCGCAGAGCGGCGCTCGCCACGGGAAGACCAGGCACGTCTTCGCTCGCTACGTCGTCGCGCACCTCGGCGTCCAGCAAGATGACCCGGCGTACCGCAGCTGGGAGGTCCACCACCAGGACGCCATCCGCTTCACCGATAAGGCGCTGGAGAAGGTTAGCGAAGCCGCGTCGCATGCCGAGGCGGCCAAGGACGCCGTCGACATCGCCGAGACCCTCCTCTCCCAGCCCCAGCCCCCGCTCCAGCTGTGGGCAGAGTGGACGTCGGCGGCCGAGAAGCTCGTGGACCAGGCCGCTTTGGAGGCCACCCTGGCGCTGGACGAGGTGCTCCGGGCGCGCCAATCTGTTGCTCTCGAGTTCTTCGACGCCGTAGCGATTCTGCGTCGCGGAAGAGCTCCACCGGCGGCGGTGGACAAGTGGTGGCAAGAGATTGAGAGGACACTCCCTGGAGCCTTCCTGCTCGTCGCCACCGGCGGGCTGAAAGCGCTCAGGTTGATCCGAGATGCCCATGGCAAGCTCCAGGAACGCGTCGCTATGCTGCGCGTGAACTTACGCCAGGAGACGCCGGCGGCGGCCGTCCCCGTCGAAGGAAATTCTGCCTACCAGCTGGATCCCGAGGGAATCTGCCCCACCGTGGCCCTTGAGGACGCCCGCCGCGAGATCTCGCAGAGCACCGTTCTCCACGCGAAGACAAGGCACGTCCTCGCTCGCTACGTCGCGCACCTCGGCGCCCAGCAGGATGACCCGGCGTACCGCAGCTGGGACGTCCACCACCAGGAAGCCGTTGACCACATCAGCAAGGCGCTGAAGAGGGTGATCGATACGGTGTCAAACGCCGAGGCGGGCAAGGTCGCCCTCGTCATCATGGGTAGCGTTGCCTACAGGTGCCCGCTGTGGGATGTGTGGGCATCGGAGGCCGAAAAATTCACGGCAGTCGCTGCCCTCGAGGCCACTATGGCAACGAATGAGATGCGCTGCGCTCAGGAAGCCGTTGCTCAGGAGTTGTCCGATGCCTGGACGATTCTGTTGTCAAGGCGAAGAAACTGAACTAGCTGCACCGGCGCATGGTGAACATACGGCTCAGATTTGCTACTGATCTCCACTTTTGCTGTTCTCTTTCAGCTGAAATGAAGTCCTATACTCCTTTTTTCTACTGGAAATGGGAAGGACGACTTTGGTCCTCTGATTCTTCAAGAGTTCTAGTTGTAGCAATACATTAAGACTTAGTACC]
consensusID : consensus_3097#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1512 fasta sequence
[CACACACGCGCGCGGAAAACACTCCCAATCCCAAACCGAAGCGAGAAAGAGCTCGAGAGGGAGAGATCGATCGGCGGTGCCGGCCGCCGGCGATGGACGAGTGGGAGGAGCTGGCGCGGACAGTGCCGGCGACGCTCATGCAAGTCGGCTCCGGGATGGAAGCCGTCAGGAAGATCCAGGTCGCCCACAGGAAGATCCAAGGGCGCGCTGGTTTGATGCGCAACATACGCTTCGGGATGCCGGCGGCCATCGCCATGAGCCTCTTCGACGACCCGGCCCCCGTCGGAGTTTGCCCCACCGTGACCCTCGAGGAGGCCCGCTGCGAGATCTCGCGGGGCGCCGCTCGCCACGCGATGGCCGACCACGTCTTCGTTCGCTACGTCGAGCTCCTCGGCATCCAGCACGAGCCGCCGTGCACCAGCAGGGACACCCACCACCGGGAGGCCATCCGCTTCACCGCCATGGCCCTGGAGAAGGTCAGGGAAGCCGCGTCGCTTGCAGAGGCGGCCAAGGACGCCGTCGACATCGCCGAGACGCTCCTCCCGCAGCCCGAGCTGAAGATGGAGTGGGCGTTGGCGGCCCAGGACCTCGCGGAACGCGCCGACTACGAAGCCACCCAGGCGCTGGAGTTTGTGAAACGGGCGCGCGACGTCGTCGCTCTCGAGTTCTTCGACACCTGGAAGATTCTGCGTCGCGGGAGAGCTCGATCGGCGGAGATGAAGGAGTGGAGAGAGCTAGCGCTGAAAGTGCCGGGAACCATCATGCTCATCGGCGACGCCGAGCTGGAAACCCTCGAGTTGATCCAAGCCGCCGTCAGCAAGTTCCAGAAGCATGTCGAGTTGCTGCAAGAGGTACGCCATGGGACGGCGACGGCCACCGCCGTCGACAACTTCACCGACCCGGACCCCGAGGGAGCCTTGCCCACCGAGCTCCTCGAGAACGCACGCCGCGGGATGTCCAAGAGCGCCGTTCGCCATGCGAAGGCCCACCACATCTTCGCTCGCTACGCCGCGTTCCTCGGCATCCAAGGCGACGAGGAGTACCGCAGCTGGGACAACAAGCACCAGGAAGCCGCCGGCAGCATGGTCGCGGCGCTGAAGAAAGTCATCGACGCCGTCTCGGATGCTGAGGCAGCCAAGGACGCCGTCGCCATGGTCGGGATCCTCCCCTACCAGTGCCCGCTGTGGGAATTGTGGGCGTTGAGGGCGCAGAACCAGACCTCCTTGTCCTCCTTCAACGCCACCCTCGCGATACTAGACGTGCGACAGGCGCGCGAGGCCTTTTTTGTGGAGGTCTTACGCGCCTGGTTGATTCTGCGTCGCTATGGATCTCTTCAACTCCTGGATGATTCTGCATCGCTCTGGAGTTCCTCGACGCCTGCATGATACGTTGACACCGCGTCGCGAAGCACGCAGGTTACCCGATCGAGCTAGCTTGGTAATCGATCGATTGGTGGACTCGAAATTCTTGATCAGTTTGAAAACAACCACTTGGATGTTTCTGTTTCTTCTG]
[+] EMBL AK108577 [CACACACGCGCGCGGAAAACACTCCCAATCCCAAACCGAAGCGAGAAAGAGCTCGAGAGGGAGAGATCGATCGGCGGTGCCGGCCGCCGGCGATGGACGAGTGGGAGGAGCTGGCGCGGACAGTGCCGGCGACGCTCATGCAAGTCGGCTCCGGGATGGAAGCCGTCAGGAAGATCCAGGTCGCCCACAGGAAGATCCAAGGGCGCGCTGGTTTGATGCGCAACATACGCTTCGGGATGCCGGCGGCCATCGCCATGAGCCTCTTCGACGACCCGGCCCCCGTCGGAGTTTGCCCCACCGTGACCCTCGAGGAGGCCCGCTGCGAGATCTCGCGGGGCGCCGCTCGCCACGCGATGGCCGACCACGTCTTCGTTCGCTACGTCGAGCTCCTCGGCATCCAGCACGAGCCGCCGTGCACCAGCAGGGACACCCACCACCGGGAGGCCATCCGCTTCACCGCCATGGCCCTGGAGAAGGTCAGGGAAGCCGCGTCGCTTGCAGAGGCGGCCAAGGACGCCGTCGACATCGCCGAGACGCTCCTCCCGCAGCCCGAGCTGAAGATGGAGTGGGCGTTGGCGGCCCAGGACCTCGCGGAACGCGCCGACTACGAAGCCACCCAGGCGCTGGAGTTTGTGAAACGGGCGCGCGACGTCGTCGCTCTCGAGTTCTTCGACACCTGGAAGATTCTGCGTCGCGGGAGAGCTCGATCGGCGGAGATGAAGGAGTGGAGAGAGCTAGCGCTGAAAGTGCCGGGAACCATCATGCTCATCGGCGACGCCGAGCTGGAAACCCTCGAGTTGATCCAAGCCGCCGTCAGCAAGTTCCAGAAGCATGTCGAGTTGCTGCAAGAGGTACGCCATGGGACGGCGACGGCCACCGCCGTCGACAACTTCACCGACCCGGACCCCGAGGGAGCCTTGCCCACCGAGCTCCTCGAGAACGCACGCCGCGGGATGTCCAAGAGCGCCGTTCGCCATGCGAAGGCCCACCACATCTTCGCTCGCTACGCCGCGTTCCTCGGCATCCAAGGCGACGAGGAGTACCGCAGCTGGGACAACAAGCACCAGGAAGCCGCCGGCAGCATGGTCGCGGCGCTGAAGAAAGTCATCGACGCCGTCTCGGATGCTGAGGCAGCCAAGGACGCCGTCGCCATGGTCGGGATCCTCCCCTACCAGTGCCCGCTGTGGGAATTGTGGGCGTTGAGGGCGCAGAACCAGACCTCCTTGTCCTCCTTCAACGCCACCCTCGCGATACTAGACGTGCGACAGGCGCGCGAGGCCTTTTTTGTGGAGGTCTTACGCGCCTGGTTGATTCTGCGTCGCTATGGATCTCTTCAACTCCTGGATGATTCTGCATCGCTCTGGAGTTCCTCGACGCCTGCATGATACGTTGACACCGCGTCGCGAAGCACGCAGGTTACCCGATCGAGCTAGCTTGGTAATCGATCGATTGGTGGACTCGAAATTCTTGATCAGTTTGAAAACAACCACTTGGATGTTTCTGTTTCTTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3097#0 -------------------------CAAGCCGAAGCTAGAAACTTAGAAAGAGCG-GAGA 34
consensus_3097#1 CACACACGCGCGCGGAAAACACTCCCAATCCCAAACC--GAAGCGAGAAAGAGCTCGAGA 58
*** ** ** * ** ********* ****
consensus_3097#0 GGGTGAGGGAGAAGGAGAGAGCTCGATCGGCGGCAATGGACGAGTGGGAGGAGCTTGCGT 94
consensus_3097#1 GGGAGAGATCGATCGGCGGTGC-CGGCCGCCGGCGATGGACGAGTGGGAGGAGCTGGCGC 117
*** *** ** * * ** ** ** **** ******************** ***
consensus_3097#0 GGAGAGTGCCCGAGACGCTCATGCTAGTCAGCTGCGAGATGGAAGCCACCAGGTTGATCG 154
consensus_3097#1 GGACAGTGCCGGCGACGCTCATGCAAGTCGGCTCCGGGATGGAAGCCGTCAGGAAGATCC 177
*** ****** * *********** **** *** ** ********** **** ****
consensus_3097#0 AAGTCGCCCACAGCAATCTACAAGTGCGCGGAACTTTGTTCCGCCGGATACACTTGGGCA 214
consensus_3097#1 AGGTCGCCCACAGGAAGATCCAAGGGCGCGCTGGTTTGATGCGCAACATACGCTTCGGGA 237
* *********** ** * **** ***** **** * *** **** *** ** *
consensus_3097#0 TGCCGGCGGCCATCGCCATGAACCTCTTCGGCGACCCGGCCGCCGAAGGAGTCATCCCCA 274
consensus_3097#1 TGCCGGCGGCCATCGCCATGAGCCTCTTCGACGACCCGGCCCCCGTCGGAGTTTGCCCCA 297
********************* ******** ********** *** ***** *****
consensus_3097#0 CCGAGATCCTCGAGGAGGCCCGCCGCGAGATCTCGCAGAGCGGCGCTCGCCACGGGAAGA 334
consensus_3097#1 CCGTGACCCTCGAGGAGGCCCGCTGCGAGATCTCGCGGGGCGCCGCTCGCCACGCGATGG 357
*** ** **************** ************ * *** *********** ** *
consensus_3097#0 CCAGGCACGTCTTCGCTCGCTACGTCGTCGCGCACCTCGGCGTCCAGCAAGATGACCCGG 394
consensus_3097#1 CCGACCACGTCTTCGTTCGCTACGTCGA---GCTCCTCGGCATCCAGCA---CGAGCCGC 411
** ********** *********** ** ******* ******* ** ***
consensus_3097#0 CGTACCGCAGCTGGGAGGTCCACCACCAGGACGCCATCCGCTTCACCGATAAGGCGCTGG 454
consensus_3097#1 CGTGCACCAGCAGGGACACCCACCACCGGGAGGCCATCCGCTTCACCGCCATGGCCCTGG 471
*** * **** **** ******** *** **************** * *** ****
consensus_3097#0 AGAAGGTTAGCGAAGCCGCGTCGCATGCCGAGGCGGCCAAGGACGCCGTCGACATCGCCG 514
consensus_3097#1 AGAAGGTCAGGGAAGCCGCGTCGCTTGCAGAGGCGGCCAAGGACGCCGTCGACATCGCCG 531
******* ** ************* *** *******************************
consensus_3097#0 AGACCCTCCTCTCCCAGCCCCAGCCCCCGCTCCAGCTGTGGGCAGAGTGGACGTCGGCGG 574
consensus_3097#1 AGACGCTCCTCCCGCAGCCCGAGC------------TGAAGATGGAGTGGGCGTTGGCGG 579
**** ****** * ****** *** ** * ****** *** *****
consensus_3097#0 CCGAGAAGCTCGTGGACCAGGCCGCTTTGGAGGCCACCCTGGCGCTGGACGAGGTGCTCC 634
consensus_3097#1 CCCAGGACCTCGCGGAACGCGCCGACTACGAAGCCACCCAGGCGCTGGAGTTTGTGAAAC 639
** ** * **** *** * **** * ** ******* ********* *** *
consensus_3097#0 GGGCGCGCCAATCTGTTGCTCTCGAGTTCTTCGACGCCGTAGCGATTCTGCGTCGCGGAA 694
consensus_3097#1 GGGCGCGCGACGTCGTCGCTCTCGAGTTCTTCGACACCTGGAAGATTCTGCGTCGCGGGA 699
******** * ** ****************** ** *************** *
consensus_3097#0 GAGCTCCACCGGCGGCGGTGGACAAGTGGTGGCAAGAGATTGAGAGGACACTCCCTGGAG 754
consensus_3097#1 GAGCTCGATCGGCGGAGATG---AAGGAGTGGAGAGAGCTAGCGCTGAAAGTGCCGGGAA 756
****** * ****** * ** *** **** **** * * * ** * * ** ***
consensus_3097#0 CCTTCCTGCTCGTCGCCACCGGCGGGCTGAAAGCGCTCAGGTTGATCCGAGATGCCCATG 814
consensus_3097#1 CCATCATGCTCATCGGCGACGCCGAGCTGGAAACCCTCGAGTTGATCCAAGCCGCCGTCA 816
** ** ***** *** * ** ** **** ** * *** ******** ** ***
consensus_3097#0 GCAAGCTCCAGGAACGCGTCGCTATGCTGCGCGTGAACTTACGCCAGGAGACGCCGGCGG 874
consensus_3097#1 GCAAGTTCCAGAAGCATGTCGAGTTGCTGCAAGAGG---TACGCCATGGGA---CGGCGA 870
***** ***** * * **** ****** * * ******* * ** *****
consensus_3097#0 CGGCCGTCCCCGTCGAAGGAAATTCTGCCTACCAGCTGGATCCCGAGGGAATCTGCCCCA 934
consensus_3097#1 CGGCCACCGCCGTCGAC---AACTTCACCGACC---CGGACCCCGAGGGAGCCTTGCCCA 924
***** * ******* ** * ** *** *** ********* ** ****
consensus_3097#0 CCGTGGCCCTTGAGGACGCCCGCCGCGAGATCTCGCAGAGCACCGTTCTCCACGCGAAGA 994
consensus_3097#1 CCGAGCTCCTCGAGAACGCACGCCGCGGGATGTCCAAGAGCGCCGTTCGCCATGCGAAGG 984
*** * *** *** **** ******* *** ** ***** ****** *** ******
consensus_3097#0 CAAGGCACGTCCTCGCTCGCTACGTCGCGCACCTCGGCGCCCAGCAGGATGACCCGGCGT 1054
consensus_3097#1 CCCACCACATCTTCGCTCGCTACGCCGCGTTCCTCGGCATCC---AAGGCGACGAGGAGT 1041
* *** ** ************ **** ******* ** * * *** ** **
consensus_3097#0 ACCGCAGCTGGGACGTCCACCACCAGGAAGCCGTTGACCACATCAGCAAGGCGCTGAAGA 1114
consensus_3097#1 ACCGCAGCTGGGACAACAAGCACCAGGAAGCCGCCGGCAGCATGGTCGCGGCGCTGAAGA 1101
************** * * ************* * * *** * ***********
consensus_3097#0 GGGTGATCGATACGGTGTCAAACGCCGAGGCGGGCAAGGTCGCCCTCGTCATCATGGGTA 1174
consensus_3097#1 AAGTCATCGACGCCGTCTCGGATGCTGAGGCAGCCAAGGACGCCGTCGCCATGGTCGGGA 1161
** ***** * ** ** * ** ***** * ***** **** *** *** * ** *
consensus_3097#0 GCGTTGCCTACAGGTGCCCGCTGTGGGATGTGTGGGCATCGGAGGCCGAAAAATTCACGG 1234
consensus_3097#1 TCCTCCCCTACCAGTGCCCGCTGTGGGAATTGTGGGCGTTGAGGGCGCAGAACCAGACCT 1221
* * ***** *************** ******* * * *** * ** **
consensus_3097#0 CAGTCGCTGCCCTCGAGGCCACTATGGCAACGAATGAGATGCGCTGCGCTCAGGAAGCCG 1294
consensus_3097#1 CCTTGTCCTCCTTCAACGCCACCCTCGCGATACTAGACGTGCGACAGGCGCGCGAGGCCT 1281
* * * ** ** * ***** * ** * ** **** ** * ** ***
consensus_3097#0 TTGCTCAGGAGTTGTCCGATGCCTGGACGATTCTGTTGTCAAGGCGAAGAAACTGAACTA 1354
consensus_3097#1 TTTTTGTGGAGGTCTTACGCGCCTGGTTGATTCTGC-GTCGCTATGGATCTCTTCAACTC 1340
** * **** * * ****** ******* *** * * * ****
consensus_3097#0 GCTGCACCGGCGCATGGTGAACATACGGCTCAGATTTGCTACTGATCTCCACTTTTGCTG 1414
consensus_3097#1 ------CTGGATGATTCTGCAT---CGCTCTGGAGTTCCT--CGACGCCTGCATGATACG 1389
* ** ** ** * ** ** ** ** ** * * * *
consensus_3097#0 TTCTCTTTCAGCTGAAATGAAGTCCTAT-ACTCCTTTTTTCTA--CTGGAAATGGGAAGG 1471
consensus_3097#1 TTGACACCGCGTCGCGAAGCACGCAGGTTACCCGATCGAGCTAGCTTGGTAATCGATCGA 1449
** * * * * * * * * ** * * *** *** *** * *
consensus_3097#0 ACGACTTTGGTCCTCTGATTCTTCAAGAGTTCTAGTTGTAGCAATACATTAAGACTTAGT 1531
consensus_3097#1 TTGG---TGGACTCGAAATTCTTGATCAGTTTGAA----AACAACCACTTGGATGTTTCT 1502
* *** * ****** * **** * * *** ** ** *
consensus_3097#0 ACC------- 1534
consensus_3097#1 GTTTCTTCTG 1512
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||