These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3178#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2340 fasta sequence [CGAGGCGGCGGAGGTTGCGGCGGGGATGGACGCGGAGGGGTTGCTGGCGTCGGCGGCGATCAACCTGGGCCTGGCGCTGGTGGCGCTCTCGCTCTTCTCCTTGCTCAAGAAGCAGCCCGGCAACGCGCCGGTGTACCTTGCGCGGCGGATGGCCGCCGGTGGCGGTGGGGGCGGGCTGCCGCTCGGCCACGGGCGGTTGACCCCGTCGTTCCGGTGGATCCGCGCCGCGCTCCGGCTCTCCGAGGACGACGTGCTGCGGCGCCACGGCCTCGACGCGCTCGTCGTCGTCCGCCTCTTCAAATTCGGGATCAAGTGCTTCGCTGTTTGCTCAATCGTTGGATTGTTCATCCTTGCACCAACAAATTATTCCTGTGAAGGTCTACAAGACACCAAAAGGTCAAATTCAATGGAACTTTTCACGGTATCCAATGTGGCAAGGGGTTCTAACAGGCTTTGGGTGCATTTTGCATGCCTCTGCTTCATATCATTCTATGTGGTGTATTTGCTTCATAAGGAGCACAAAGAAATGTCCAGCAGAAGAATTGCACATTTGAAGTATCACAGGAAACGGCCTGACCAATATACCATTTTAGTTCGAGGAATTCCACTATGCCCAGATCATGGAACTTATGGGTGTTATGCTGACCACTTCTTCTCAAAGCACTACCGAACATACCAATCGTATCACATAGTACACGACATTGGAAACATCAAGGCACTTCAGAAGTTGGCATCCTCCCTTGAGGACAAGATAAAGAGGAAAAGAGAAACCAGAAGATGTAACTTTTGGAAGTGGATCTGGTTTAAGTTGACATTAGAAGCGATAGATACTCGCAAACTGGAAGAAAAACTGAAGAACGTCCATCACTCTATCCGCCTCCTACAGTGTGAAAATATGCTTAAACGGAAGGAATTACCGGTTGCTTTTGTCTCATTCAAATCACAGCTGGATGCTGCCCAAGCTGCCGAAATGCAACAGCATGTCAATCCTCTGTCCTTGGTGACAACATATGCTCCTGAACCACCTGATGCACTATGGACAAATCTGGCTATTCCTTTCTGCCGTATTGCTATATACAAACTTGGTGTCTTCATTGCTGCGTTTCTGCTAATAGTGTTCTTCTCCATCCCTGTCACAGCTGTGCAAGGGATAGTACAATTTGAGAAAATTAAAATATGGTTTCCACCGGCTAGAGCTGTGGAACTTATACCAGGTTTGAATTCTGTCGTAACTGGGTATCTTCCAAGCATGATCTTGAATGGCTTTATCTACTTGATTCCCTTCGCGATGCTTGGCATGGCATCATTTGAGGGATGCATTGCAAAAAGTCAGAAGGAAATCAAGGCCTGCAACATGGTATTTTACTTCTTGTTAGGGAATGTTTTCTTTTTGAGCATTCTTTCTGGTTCTCTACTCCACCAGATAGGAGAATCCTTTACACATCCAAAAGACATACCTAGCCGTCTGGCCCGTGCTGTTTCTGCACAGTCAGATTTCTTCATCACATACATTTTGACCGACGGCATGTCAGGGTTTTCCTTGGAGGTTCTTCAGTTTGGTTTGCTTACATGGCATTTCTTCAAGGCACATTCAATTGGACATAGTGAGCAGCCATATCTTTATGGCTTCCCTTACTACAGAGTTGTGCCCATCGTTTCCCTTGCAGTATTGATTGGGTTGGTCTATGCTGTTGTTGCGCCTCTTCTACTTCCAATTCTTGTTATCTACTTTTTGCTTGGTTACGCAGTGTACATCAACAAGATGGAAGATGTATATGAGATTACATATGATACTTGTGGACAATATTGGCCCAATATTCATCGCTACATCTTCCTTTCGGTCACACTCATGCAAATTACAATGCTGAAGTCGAAACCGGGGGCTTCATTCGCCACGGTTCCCTTGCTTGTGTCAACCATTTTGTTCAATGAGTACTGCAAGGTTCGGTTTCTTCCAACCTTCCTTCATCGACCGGTTCAGGTTGCCAAGGAGAATGACGACCTTAATGAAGCTGAGGGGATGAGAGGTGACCTGGACCATGCCATTAGCGCCTATAAGCCACCATGGATGCGCCCGACGAACTTCTCTCCAGATTGTAGTTCGGTACAACCTTTGATCCGTTCTGTATAGTAGTGTTGGTGACACCGCTAGCTTGGTATTGGTTTTAGTCCTGTTACATAATAAGAACCAGGCAAATTTTCGTGTGAAGTTTGGCTGTTGGCAGATATAAGCTCGCATATAACAATGGCATATGCTTTTTATGTGCTCAAGGAGTCGTTTTACATGTAATTACCACGCTTTGGCTCAGTTTACTCGGTGAAAATTACAAATTCAAACAA] [+] EMBL AK101121 [CGAGGCGGCGGAGGTTGCGGCGGGGATGGACGCGGAGGGGTTGCTGGCGTCGGCGGCGATCAACCTGGGCCTGGCGCTGGTGGCGCTCTCGCTCTTCTCCTTGCTCAAGAAGCAGCCCGGCAACGCGCCGGTGTACCTTGCGCGGCGGATGGCCGCCGGTGGCGGTGGGGGCGGGCTGCCGCTCGGCCACGGGCGGTTGACCCCGTCGTTCCGGTGGATCCGCGCCGCGCTCCGGCTCTCCGAGGACGACGTGCTGCGGCGCCACGGCCTCGACGCGCTCGTCGTCGTCCGCCTCTTCAAATTCGGGATCAAGTGCTTCGCTGTTTGCTCAATCGTTGGATTGTTCATCCTTGCACCAACAAATTATTCCTGTGAAGGTCTACAAGACACCAAAAGGTCAAATTCAATGGAACTTTTCACGGTATCCAATGTGGCAAGGGGTTCTAACAGGCTTTGGGTGCATTTTGCATGCCTCTGCTTCATATCATTCTATGTGGTGTATTTGCTTCATAAGGAGCACAAAGAAATGTCCAGCAGAAGAATTGCACATTTGAAGTATCACAGGAAACGGCCTGACCAATATACCATTTTAGTTCGAGGAATTCCACTATGCCCAGATCATGGAACTTATGGGTGTTATGCTGACCACTTCTTCTCAAAGCACTACCGAACATACCAATCGTATCACATAGTACACGACATTGGAAACATCAAGGCACTTCAGAAGTTGGCATCCTCCCTTGAGGACAAGATAAAGAGGAAAAGAGAAACCAGAAGATGTAACTTTTGGAAGTGGATCTGGTTTAAGTTGACATTAGAAGCGATAGATACTCGCAAACTGGAAGAAAAACTGAAGAACGTCCATCACTCTATCCGCCTCCTACAGTGTGAAAATATGCTTAAACGGAAGGAATTACCGGTTGCTTTTGTCTCATTCAAATCACAGCTGGATGCTGCCCAAGCTGCCGAAATGCAACAGCATGTCAATCCTCTGTCCTTGGTGACAACATATGCTCCTGAACCACCTGATGCACTATGGACAAATCTGGCTATTCCTTTCTGCCGTATTGCTATATACAAACTTGGTGTCTTCATTGCTGCGTTTCTGCTAATAGTGTTCTTCTCCATCCCTGTCACAGCTGTGCAAGGGATAGTACAATTTGAGAAAATTAAAATATGGTTTCCACCGGCTAGAGCTGTGGAACTTATACCAGGTTTGAATTCTGTCGTAACTGGGTATCTTCCAAGCATGATCTTGAATGGCTTTATCTACTTGATTCCCTTCGCGATGCTTGGCATGGCATCATTTGAGGGATGCATTGCAAAAAGTCAGAAGGAAATCAAGGCCTGCAACATGGTATTTTACTTCTTGTTAGGGAATGTTTTCTTTTTGAGCATTCTTTCTGGTTCTCTACTCCACCAGATAGGAGAATCCTTTACACATCCAAAAGACATACCTAGCCGTCTGGCCCGTGCTGTTTCTGCACAGTCAGATTTCTTCATCACATACATTTTGACCGACGGCATGTCAGGGTTTTCCTTGGAGGTTCTTCAGTTTGGTTTGCTTACATGGCATTTCTTCAAGGCACATTCAATTGGACATAGTGAGCAGCCATATCTTTATGGCTTCCCTTACTACAGAGTTGTGCCCATCGTTTCCCTTGCAGTATTGATTGGGTTGGTCTATGCTGTTGTTGCGCCTCTTCTACTTCCAATTCTTGTTATCTACTTTTTGCTTGGTTACGCAGTGTACATCAACAAGATGGAAGATGTATATGAGATTACATATGATACTTGTGGACAATATTGGCCCAATATTCATCGCTACATCTTCCTTTCGGTCACACTCATGCAAATTACAATGCTGAAGTCGAAACCGGGGGCTTCATTCGCCACGGTTCCCTTGCTTGTGTCAACCATTTTGTTCAATGAGTACTGCAAGGTTCGGTTTCTTCCAACCTTCCTTCATCGACCGGTTCAGGTTGCCAAGGAGAATGACGACCTTAATGAAGCTGAGGGGATGAGAGGTGACCTGGACCATGCCATTAGCGCCTATAAGCCACCATGGATGCGCCCGACGAACTTCTCTCCAGATTGTAGTTCGGTACAACCTTTGATCCGTTCTGTATAGTAGTGTTGGTGACACCGCTAGCTTGGTATTGGTTTTAGTCCTGTTACATAATAAGAACCAGGCAAATTTTCGTGTGAAGTTTGGCTGTTGGCAGATATAAGCTCGCATATAACAATGGCATATGCTTTTTATGTGCTCAAGGAGTCGTTTTACATGTAATTACCACGCTTTGGCTCAGTTTACTCGGTGAAAATTACAAATTCAAACAA] consensusID : consensus_3178#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 812 fasta sequence [GACGAGACAAGGGGGGACATAGTGAGCAGCCATATCTTTATGGCTTCCCTTACTACAGAGTTGTGCCCATCGTTTCCCTTGCAGTATTGATTGGGTTGGTCTATGCTGTTGTTGCGCCTCTTCTACTTCCAATTCTTGTTATCTACTTTTTGCTTGGTTACGCAGTGTACATCAACCAGATGGAAGATGTATATGAGATTACATATGATACTTGTGGACAATATTGGCCCAATATTCATCGCTACATCTTCCTTTCGGTCACACTCATGCAAATTACAATGTTAGGGCTGTTTGGGCTGAAGTCGAAACCGGGGGCTTCATTCGCCACGGTTCCCTTGCTTGTGTCAACCATTTTGTTCAATGAGTACTGCAAGGTTCGGTTTCTTCCAACTTTCCTTCGTCGACCGGTTCAGGTTGCCAAGGAGAATGACGACCTTAATGAAGCTGAGGGGATGAGAGGTGACCTGGACCATGCCATTAGCGCCTATAAGCCACCATGGATGCGCCCGACGAACTTCTCTCCAGATTGTAGTTCGGTACAACCTTTGATCCGTTCTGTATAGTAGTGTTGGTGACACCGCTAGCTTGGTATTGGTTTTAGTTCTGTTACATAATAAGAACCAGGCAAATTTTTCGTGTGAAGTTTGGCTGTCGGCAGATATAAGCTCGCATATAACAATGGCATATGCTTTTTATGTGCTCAAGGAGTCGNTTTACATGTAATTACCACGCTTTGGCTCAGTTTACTCGGNGAAAATTACAAATTCAAACAATTTTTCTCTTATAAGTGATCAGGGGGATCTAACAAATGA] [+] EMBL CA765805 [GACGAGACAAGGGGGGACATAGTGAGCAGCCATATCTTTATGGCTTCCCTTACTACAGAGTTGTGCCCATCGTTTCCCTTGCAGTATTGATTGGGTTGGTCTATGCTGTTGTTGCGCCTCTTCTACTTCCAATTCTTGTTATCTACTTTTTGCTTGGTTACGCAGTGTACATCAACCAGATGGAAGATGTATATGAGATTACATATGATACTTGTGGACAATATTGGCCCAATATTCATCGCTACATCTTCCTTTCGGTCACACTCATGCAAATTACAATGTTAGGGCTGTTTGGGCTGAAGTCGAAACCGGGGGCTTCATTCGCCACGGTTCCCTTGCTTGTGTCAACCATTTTGTTCAATGAGTACTGCAAGGTTCGGTTTCTTCCAACTTTCCTTCGTCGACCGGTTCAGGTTGCCAAGGAGAATGACGACCTTAATGAAGCTGAGGGGATGAGAGGTGACCTGGACCATGCCATTAGCGCCTATAAGCCACCATGGATGCGCCCGACGAACTTCTCTCCAGATTGTAGTTCGGTACAACCTTTGATCCGTTCTGTATAGTAGTGTTGGTGACACCGCTAGCTTGGTATTGGTTTTAGTTCTGTTACATAATAAGAACCAGGCAAATTTTTCGTGTGAAGTTTGGCTGTCGGCAGATATAAGCTCGCATATAACAATGGCATATGCTTTTTATGTGCTCAAGGAGTCGNTTTACATGTAATTACCACGCTTTGGCTCAGTTTACTCGGNGAAAATTACAAATTCAAACAATTTTTCTCTTATAAGTGATCAGGGGGATCTAACAAATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3178#0 CGAGGCGGCGGAGGTTGCGGCGGGGATGGACGCGGAGGGGTTGCTGGCGTCGGCGGCGAT 60 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 CAACCTGGGCCTGGCGCTGGTGGCGCTCTCGCTCTTCTCCTTGCTCAAGAAGCAGCCCGG 120 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 CAACGCGCCGGTGTACCTTGCGCGGCGGATGGCCGCCGGTGGCGGTGGGGGCGGGCTGCC 180 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 GCTCGGCCACGGGCGGTTGACCCCGTCGTTCCGGTGGATCCGCGCCGCGCTCCGGCTCTC 240 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 CGAGGACGACGTGCTGCGGCGCCACGGCCTCGACGCGCTCGTCGTCGTCCGCCTCTTCAA 300 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 ATTCGGGATCAAGTGCTTCGCTGTTTGCTCAATCGTTGGATTGTTCATCCTTGCACCAAC 360 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 AAATTATTCCTGTGAAGGTCTACAAGACACCAAAAGGTCAAATTCAATGGAACTTTTCAC 420 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 GGTATCCAATGTGGCAAGGGGTTCTAACAGGCTTTGGGTGCATTTTGCATGCCTCTGCTT 480 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 CATATCATTCTATGTGGTGTATTTGCTTCATAAGGAGCACAAAGAAATGTCCAGCAGAAG 540 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 AATTGCACATTTGAAGTATCACAGGAAACGGCCTGACCAATATACCATTTTAGTTCGAGG 600 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 AATTCCACTATGCCCAGATCATGGAACTTATGGGTGTTATGCTGACCACTTCTTCTCAAA 660 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 GCACTACCGAACATACCAATCGTATCACATAGTACACGACATTGGAAACATCAAGGCACT 720 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 TCAGAAGTTGGCATCCTCCCTTGAGGACAAGATAAAGAGGAAAAGAGAAACCAGAAGATG 780 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 TAACTTTTGGAAGTGGATCTGGTTTAAGTTGACATTAGAAGCGATAGATACTCGCAAACT 840 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 GGAAGAAAAACTGAAGAACGTCCATCACTCTATCCGCCTCCTACAGTGTGAAAATATGCT 900 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 TAAACGGAAGGAATTACCGGTTGCTTTTGTCTCATTCAAATCACAGCTGGATGCTGCCCA 960 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 AGCTGCCGAAATGCAACAGCATGTCAATCCTCTGTCCTTGGTGACAACATATGCTCCTGA 1020 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 ACCACCTGATGCACTATGGACAAATCTGGCTATTCCTTTCTGCCGTATTGCTATATACAA 1080 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 ACTTGGTGTCTTCATTGCTGCGTTTCTGCTAATAGTGTTCTTCTCCATCCCTGTCACAGC 1140 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 TGTGCAAGGGATAGTACAATTTGAGAAAATTAAAATATGGTTTCCACCGGCTAGAGCTGT 1200 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 GGAACTTATACCAGGTTTGAATTCTGTCGTAACTGGGTATCTTCCAAGCATGATCTTGAA 1260 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 TGGCTTTATCTACTTGATTCCCTTCGCGATGCTTGGCATGGCATCATTTGAGGGATGCAT 1320 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 TGCAAAAAGTCAGAAGGAAATCAAGGCCTGCAACATGGTATTTTACTTCTTGTTAGGGAA 1380 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 TGTTTTCTTTTTGAGCATTCTTTCTGGTTCTCTACTCCACCAGATAGGAGAATCCTTTAC 1440 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 ACATCCAAAAGACATACCTAGCCGTCTGGCCCGTGCTGTTTCTGCACAGTCAGATTTCTT 1500 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 CATCACATACATTTTGACCGACGGCATGTCAGGGTTTTCCTTGGAGGTTCTTCAGTTTGG 1560 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 TTTGCTTACATGGCATTTCTTCAAGGCACATTCAATTGGACATAGTGAGCAGCCATATCT 1620 consensus_3178#1 -----------------------GACGAGACAAGGGGGGACATAGTGAGCAGCCATATCT 37 * * *********************** consensus_3178#0 TTATGGCTTCCCTTACTACAGAGTTGTGCCCATCGTTTCCCTTGCAGTATTGATTGGGTT 1680 consensus_3178#1 TTATGGCTTCCCTTACTACAGAGTTGTGCCCATCGTTTCCCTTGCAGTATTGATTGGGTT 97 ************************************************************ consensus_3178#0 GGTCTATGCTGTTGTTGCGCCTCTTCTACTTCCAATTCTTGTTATCTACTTTTTGCTTGG 1740 consensus_3178#1 GGTCTATGCTGTTGTTGCGCCTCTTCTACTTCCAATTCTTGTTATCTACTTTTTGCTTGG 157 ************************************************************ consensus_3178#0 TTACGCAGTGTACATCAACAAGATGGAAGATGTATATGAGATTACATATGATACTTGTGG 1800 consensus_3178#1 TTACGCAGTGTACATCAACCAGATGGAAGATGTATATGAGATTACATATGATACTTGTGG 217 ******************* **************************************** consensus_3178#0 ACAATATTGGCCCAATATTCATCGCTACATCTTCCTTTCGGTCACACTCATGCAAATTAC 1860 consensus_3178#1 ACAATATTGGCCCAATATTCATCGCTACATCTTCCTTTCGGTCACACTCATGCAAATTAC 277 ************************************************************ consensus_3178#0 AATG---------------CTGAAGTCGAAACCGGGGGCTTCATTCGCCACGGTTCCCTT 1905 consensus_3178#1 AATGTTAGGGCTGTTTGGGCTGAAGTCGAAACCGGGGGCTTCATTCGCCACGGTTCCCTT 337 **** ***************************************** consensus_3178#0 GCTTGTGTCAACCATTTTGTTCAATGAGTACTGCAAGGTTCGGTTTCTTCCAACCTTCCT 1965 consensus_3178#1 GCTTGTGTCAACCATTTTGTTCAATGAGTACTGCAAGGTTCGGTTTCTTCCAACTTTCCT 397 ****************************************************** ***** consensus_3178#0 TCATCGACCGGTTCAGGTTGCCAAGGAGAATGACGACCTTAATGAAGCTGAGGGGATGAG 2025 consensus_3178#1 TCGTCGACCGGTTCAGGTTGCCAAGGAGAATGACGACCTTAATGAAGCTGAGGGGATGAG 457 ** ********************************************************* consensus_3178#0 AGGTGACCTGGACCATGCCATTAGCGCCTATAAGCCACCATGGATGCGCCCGACGAACTT 2085 consensus_3178#1 AGGTGACCTGGACCATGCCATTAGCGCCTATAAGCCACCATGGATGCGCCCGACGAACTT 517 ************************************************************ consensus_3178#0 CTCTCCAGATTGTAGTTCGGTACAACCTTTGATCCGTTCTGTATAGTAGTGTTGGTGACA 2145 consensus_3178#1 CTCTCCAGATTGTAGTTCGGTACAACCTTTGATCCGTTCTGTATAGTAGTGTTGGTGACA 577 ************************************************************ consensus_3178#0 CCGCTAGCTTGGTATTGGTTTTAGTCCTGTTACATAATAAGAACCAGGCAAATTTT-CGT 2204 consensus_3178#1 CCGCTAGCTTGGTATTGGTTTTAGTTCTGTTACATAATAAGAACCAGGCAAATTTTTCGT 637 ************************* ****************************** *** consensus_3178#0 GTGAAGTTTGGCTGTTGGCAGATATAAGCTCGCATATAACAATGGCATATGCTTTTTATG 2264 consensus_3178#1 GTGAAGTTTGGCTGTCGGCAGATATAAGCTCGCATATAACAATGGCATATGCTTTTTATG 697 *************** ******************************************** consensus_3178#0 TGCTCAAGGAGTCGTTTTACATGTAATTACCACGCTTTGGCTCAGTTTACTCGGTGAAAA 2324 consensus_3178#1 TGCTCAAGGAGTCGNTTTACATGTAATTACCACGCTTTGGCTCAGTTTACTCGGNGAAAA 757 ************** *************************************** ***** consensus_3178#0 TTACAAATTCAAACAA--------------------------------------- 2340 consensus_3178#1 TTACAAATTCAAACAATTTTTCTCTTATAAGTGATCAGGGGGATCTAACAAATGA 812 **************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||