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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1302 fasta sequence
[AATTCCCCGTCTCGTGCCAATCTGTTCTTTCCGTCGCGCCCCATCGACCGGACCCCGATGATGGCCGGCGGCGACCTGCGCAGCCTGTTGGCCGTCGTTGCCGCGGTGGCCGCGGCCATGTCGTACGTTCGCTTCGTGGCGCGCCGCCTCCGCCCTGGCCTGCCCCGCCTCGCCGCGTTCGTGCCGCTGCTCGCCGTCCTCCCCGTCATCCCGCTCGCGTTCCGCGCGCTCCATCTCCGCGTCACCTCCGGGTTCTTCCTCGGATGGCTCGCGGAGTTCAAGCTGCTGCTCCTTGCCTCGGGGCATGGCCCGCTCGACACGTCCCTCCCGCTGCCCGCCTTCGTCGCCATCGCCTCCTTGCCCGTCAGGCGACGCGCGCAGCGCGATTCCGAGAACGCCCCGCGCCCGGGCCTTGGCCTCGTCACCTCCGCCGTGATGGCCGCGCTGCTCGCCACCATCGTGTCGGTCTACCCCCACAAGGAGCGGATGAACGAGTACGTCCTGCTGATGCTGTACTCGCTGCACGTCTACCTCGCGCTGGAGCTCGTCCTGGCGTTCGCCGCGGCGGCGGCGCGCGCGGTGATGGGGATGGACTTAGAGCCGCAGTTCGACCGGCCCTACCTGTCGGCGAGCCTGCGGGAGTTCTGGGGCAGGCGGTGGAACCTGTCGGTGCCCGCGCTGCTCCGCCAGTGCGTGAGCCGCCCCGTGCGCGCGCGCGTAGGCGGCGGCGTCGCCGGCGTCGCCGCGGGGGTGCTCGCGGCGTTCCTCGTCTCGGGGATCATGCACGAGGCGGTGATCTACTACGCCACGCTGCGGCCGCCGACGGGGGAGCCGACCGCGTTCTTCGCGCTGCACGGGGCGTGCGCGGTGGCGGAGGGGTGGTTTGCTGCGCACAAGGGGTGGCCGCGGCCGCCGCGCGCCGTTGCGACCGCCCTGACGCTGGCGTTCATCCTAGCGACGGGGTTCTGGCTCATCGTCCCGCCGATCACGAGGACCGGGACTGACAGGGTGGTGATCGCGGAGAGCGAGGCCATGGTCGCGTTCGTTCGGGACGCCGGAAGCTGGGCCGCCGCATCCGTCCGATCGGCTTTGACCGGCCACTCCTAGTTTGATTACGACGGGTCACTGGCGCATCTCTCGTTCAGTTCACGGTACAAATTTGTATATTGATTTTTCGTTAGATTTGGAGCTACAGATTTTTCATGTAGCTTTAGATTTATGTATATAGAAAGAAAAAAATTATTTGATTAGTGCTGCTAAATTTAAAATTAGAAATTCATGATGAATTAATACAAAGTTATA]
[+] EMBL AK109152 [AATTCCCCGTCTCGTGCCAATCTGTTCTTTCCGTCGCGCCCCATCGACCGGACCCCGATGATGGCCGGCGGCGACCTGCGCAGCCTGTTGGCCGTCGTTGCCGCGGTGGCCGCGGCCATGTCGTACGTTCGCTTCGTGGCGCGCCGCCTCCGCCCTGGCCTGCCCCGCCTCGCCGCGTTCGTGCCGCTGCTCGCCGTCCTCCCCGTCATCCCGCTCGCGTTCCGCGCGCTCCATCTCCGCGTCACCTCCGGGTTCTTCCTCGGATGGCTCGCGGAGTTCAAGCTGCTGCTCCTTGCCTCGGGGCATGGCCCGCTCGACACGTCCCTCCCGCTGCCCGCCTTCGTCGCCATCGCCTCCTTGCCCGTCAGGCGACGCGCGCAGCGCGATTCCGAGAACGCCCCGCGCCCGGGCCTTGGCCTCGTCACCTCCGCCGTGATGGCCGCGCTGCTCGCCACCATCGTGTCGGTCTACCCCCACAAGGAGCGGATGAACGAGTACGTCCTGCTGATGCTGTACTCGCTGCACGTCTACCTCGCGCTGGAGCTCGTCCTGGCGTTCGCCGCGGCGGCGGCGCGCGCGGTGATGGGGATGGACTTAGAGCCGCAGTTCGACCGGCCCTACCTGTCGGCGAGCCTGCGGGAGTTCTGGGGCAGGCGGTGGAACCTGTCGGTGCCCGCGCTGCTCCGCCAGTGCGTGAGCCGCCCCGTGCGCGCGCGCGTAGGCGGCGGCGTCGCCGGCGTCGCCGCGGGGGTGCTCGCGGCGTTCCTCGTCTCGGGGATCATGCACGAGGCGGTGATCTACTACGCCACGCTGCGGCCGCCGACGGGGGAGCCGACCGCGTTCTTCGCGCTGCACGGGGCGTGCGCGGTGGCGGAGGGGTGGTTTGCTGCGCACAAGGGGTGGCCGCGGCCGCCGCGCGCCGTTGCGACCGCCCTGACGCTGGCGTTCATCCTAGCGACGGGGTTCTGGCTCATCGTCCCGCCGATCACGAGGACCGGGACTGACAGGGTGGTGATCGCGGAGAGCGAGGCCATGGTCGCGTTCGTTCGGGACGCCGGAAGCTGGGCCGCCGCATCCGTCCGATCGGCTTTGACCGGCCACTCCTAGTTTGATTACGACGGGTCACTGGCGCATCTCTCGTTCAGTTCACGGTACAAATTTGTATATTGATTTTTCGTTAGATTTGGAGCTACAGATTTTTCATGTAGCTTTAGATTTATGTATATAGAAAGAAAAAAATTATTTGATTAGTGCTGCTAAATTTAAAATTAGAAATTCATGATGAATTAATACAAAGTTATA]
consensusID : consensus_3196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence
[GCCGGCGGCGACCTGCGCAGCCTCGTCGCCGTGTGCGCCGCGGTGACCGCGGCCATGTGGTGCGCCCGCTTCGCCGCGCGCCGTCTCCGCCCCGGCCTGCCCCGCCTCGCCGCGTTCGTCCCGGTGCTCGCCGTCCTCCCGTTCCTCCCGCTCGCCTTCCGCGCGCTCCACCCGCGCGCCATCTCAGGGTTCTTCCTCGCCTGGCTCGCGGAGTTCAAGCTGCTGCTCCTCGCCTCGGGGCAGGGCCCGCTCGACCCGTCCCTCCCGCTCCCCGCCTTTGTCGCCATCGCCACCTTCCCCGTCAGGCAGCCGTGATCCCACCAAGAACGCCGCGGGATCCGGCCTTGGC]
[+] EMBL BE230619 [GCCGGCGGCGACCTGCGCAGCCTCGTCGCCGTGTGCGCCGCGGTGACCGCGGCCATGTGGTGCGCCCGCTTCGCCGCGCGCCGTCTCCGCCCCGGCCTGCCCCGCCTCGCCGCGTTCGTCCCGGTGCTCGCCGTCCTCCCGTTCCTCCCGCTCGCCTTCCGCGCGCTCCACCCGCGCGCCATCTCAGGGTTCTTCCTCGCCTGGCTCGCGGAGTTCAAGCTGCTGCTCCTCGCCTCGGGGCAGGGCCCGCTCGACCCGTCCCTCCCGCTCCCCGCCTTTGTCGCCATCGCCACCTTCCCCGTCAGGCAGCCGTGATCCCACCAAGAACGCCGCGGGATCCGGCCTTGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3196#0 AATTCCCCGTCTCGTGCCAATCTGTTCTTTCCGTCGCGCCCCATCGACCGGACCCCGATG 60
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 ATGGCCGGCGGCGACCTGCGCAGCCTGTTGGCCGTCGTTGCCGCGGTGGCCGCGGCCATG 120
consensus_3196#1 ---GCCGGCGGCGACCTGCGCAGCCTCGTCGCCGTGTGCGCCGCGGTGACCGCGGCCATG 57
*********************** * ***** ********* ***********
consensus_3196#0 TCGTACGTTCGCTTCGTGGCGCGCCGCCTCCGCCCTGGCCTGCCCCGCCTCGCCGCGTTC 180
consensus_3196#1 TGGTGCGCCCGCTTCGCCGCGCGCCGTCTCCGCCCCGGCCTGCCCCGCCTCGCCGCGTTC 117
* ** ** ******* ******** ******** ************************
consensus_3196#0 GTGCCGCTGCTCGCCGTCCTCCCCGTCATCCCGCTCGCGTTCCGCGCGCTCCATCTCCGC 240
consensus_3196#1 GTCCCGGTGCTCGCCGTCCTCCCGTTCCTCCCGCTCGCCTTCCGCGCGCTCCACCCGCGC 177
** *** **************** ** ********** ************** * ***
consensus_3196#0 GTCACCTCCGGGTTCTTCCTCGGATGGCTCGCGGAGTTCAAGCTGCTGCTCCTTGCCTCG 300
consensus_3196#1 GCCATCTCAGGGTTCTTCCTCGCCTGGCTCGCGGAGTTCAAGCTGCTGCTCCTCGCCTCG 237
* ** *** ************* ***************************** ******
consensus_3196#0 GGGCATGGCCCGCTCGACACGTCCCTCCCGCTGCCCGCCTTCGTCGCCATCGCCTCCTTG 360
consensus_3196#1 GGGCAGGGCCCGCTCGACCCGTCCCTCCCGCTCCCCGCCTTTGTCGCCATCGCCACCTTC 297
***** ************ ************* ******** ************ ****
consensus_3196#0 CCCGTCAGGCGACGCGCGCAGCGCGATTCCGAGAACGCCCCGCGCCCGGGCCTTGGCCTC 420
consensus_3196#1 CCCGTCAGGCAGC---CGTGATCCCA--CCAAGAACGCCGCGGGATCCGGCCTTGGC--- 349
********** * ** * * ** ******** ** * * *********
consensus_3196#0 GTCACCTCCGCCGTGATGGCCGCGCTGCTCGCCACCATCGTGTCGGTCTACCCCCACAAG 480
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 GAGCGGATGAACGAGTACGTCCTGCTGATGCTGTACTCGCTGCACGTCTACCTCGCGCTG 540
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 GAGCTCGTCCTGGCGTTCGCCGCGGCGGCGGCGCGCGCGGTGATGGGGATGGACTTAGAG 600
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 CCGCAGTTCGACCGGCCCTACCTGTCGGCGAGCCTGCGGGAGTTCTGGGGCAGGCGGTGG 660
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 AACCTGTCGGTGCCCGCGCTGCTCCGCCAGTGCGTGAGCCGCCCCGTGCGCGCGCGCGTA 720
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 GGCGGCGGCGTCGCCGGCGTCGCCGCGGGGGTGCTCGCGGCGTTCCTCGTCTCGGGGATC 780
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 ATGCACGAGGCGGTGATCTACTACGCCACGCTGCGGCCGCCGACGGGGGAGCCGACCGCG 840
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 TTCTTCGCGCTGCACGGGGCGTGCGCGGTGGCGGAGGGGTGGTTTGCTGCGCACAAGGGG 900
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 TGGCCGCGGCCGCCGCGCGCCGTTGCGACCGCCCTGACGCTGGCGTTCATCCTAGCGACG 960
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 GGGTTCTGGCTCATCGTCCCGCCGATCACGAGGACCGGGACTGACAGGGTGGTGATCGCG 1020
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 GAGAGCGAGGCCATGGTCGCGTTCGTTCGGGACGCCGGAAGCTGGGCCGCCGCATCCGTC 1080
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 CGATCGGCTTTGACCGGCCACTCCTAGTTTGATTACGACGGGTCACTGGCGCATCTCTCG 1140
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 TTCAGTTCACGGTACAAATTTGTATATTGATTTTTCGTTAGATTTGGAGCTACAGATTTT 1200
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 TCATGTAGCTTTAGATTTATGTATATAGAAAGAAAAAAATTATTTGATTAGTGCTGCTAA 1260
consensus_3196#1 ------------------------------------------------------------
consensus_3196#0 ATTTAAAATTAGAAATTCATGATGAATTAATACAAAGTTATA 1302
consensus_3196#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||