These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [GACGACGCCCCCTTCACCGCGTGCTTGCCAGCGAGGGCTTGATGGCGGTGGCCACCGACGACGATGAAGATGTTGAAGAGATGCAGGGCTACCGGATCGGAAGGATTGGTAGCGCCTCATGCAAGGAAGACAGACTAGACCAGATGGGATCTGCAGCTGGAACACGTAGGTTGTGCACTTCTGCAAACAATGCTGCAGTGTCCCTTCCTCCGGGGTGGGGAAGGTCACGATCGATCGCGTTCGGCGGGCGGCAGCGACGGACTGCAGGCCCGGCGACCGGCACGGGCCGCGCCTCTCAGGTCTTCGTTGATGGGGATGGAGGCCTTCGACACAGCTGCAGCATCCCCTTCGTCCATGTTCGGCCGGCCGGCACTGTTCCCGTCCTCGGGGAAGCTCATGGAGTCATATGGTGTCGCAAGTCGCAACTGTGTGCAGCGGCTCATCGCCGTCGACCTTGAGACTAACATTTGGCCTTCACTGAACTTCGCGCCGTTGTCGATACCTCCTGCCTGGCTGCCTCATAGCAGTGACAAGCAAGACATCGGCAGGAGTCAAAATGCTAGCAATAGCTGCCGTTTAGTTTTTTTATGCACTATATGGATGGACCAACAGCTGCCCTGTAAATTTTTTACTACTAGTAGCACATTTATGTTGTGATAAAAAATTACTGTACCTTTTTTTTACTATATACCAGCAGCGATCTCG] [+] EMBL AK063250 [GACGACGCCCCCTTCACCGCGTGCTTGCCAGCGAGGGCTTGATGGCGGTGGCCACCGACGACGATGAAGATGTTGAAGAGATGCAGGGCTACCGGATCGGAAGGATTGGTAGCGCCTCATGCAAGGAAGACAGACTAGACCAGATGGGATCTGCAGCTGGAACACGTAGGTTGTGCACTTCTGCAAACAATGCTGCAGTGTCCCTTCCTCCGGGGTGGGGAAGGTCACGATCGATCGCGTTCGGCGGGCGGCAGCGACGGACTGCAGGCCCGGCGACCGGCACGGGCCGCGCCTCTCAGGTCTTCGTTGATGGGGATGGAGGCCTTCGACACAGCTGCAGCATCCCCTTCGTCCATGTTCGGCCGGCCGGCACTGTTCCCGTCCTCGGGGAAGCTCATGGAGTCATATGGTGTCGCAAGTCGCAACTGTGTGCAGCGGCTCATCGCCGTCGACCTTGAGACTAACATTTGGCCTTCACTGAACTTCGCGCCGTTGTCGATACCTCCTGCCTGGCTGCCTCATAGCAGTGACAAGCAAGACATCGGCAGGAGTCAAAATGCTAGCAATAGCTGCCGTTTAGTTTTTTTATGCACTATATGGATGGACCAACAGCTGCCCTGTAAATTTTTTACTACTAGTAGCACATTTATGTTGTGATAAAAAATTACTGTACCTTTTTTTTACTATATACCAGCAGCGATCTCG] consensusID : consensus_3204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [TCCTCCGGGGTGGGGAAGGTCACGATCGTCCGCGCTCGGCGGGCGGCAGCGACGGACTGCAGGCCCGGCGAGCCTCTCAGGTCGCCGTTGATGGGGATGGAGGCCTTCGACACAGCTGCAGCATCCCCTTCGTCCATGTTCGGCCGGCCGGCACTGTTCCCGTCCTCGGGGAAGCTCATGGAGTCATGGTGTCGCAAGTCGCAACTGCGTGCAGTGGCCCATCGCCGTCGACCTTGAGACTAACATTTGGCCTTCACTGAACTTCGCGCCGTCGTCGATACCTCCTGCCAGGCTGCCTCATGGCAGCGACAAGCAAGACATCGGCAGGAGTCAAAATGCTAGCAGTAGCTGCCGTTTAGTTTTTTTTATGCATTATATAGATGGACCTACAGCTGCCCTGTAAATTTGTTACTACTAGTAGCACATTTATGTTGTCATAAAAATTTACTGTACCTTTTTTTTAAAAA] [-] EMBL CF317795 [TCCTCCGGGGTGGGGAAGGTCACGATCGTCCGCGCTCGGCGGGCGGCAGCGACGGACTGCAGGCCCGGCGAGCCTCTCAGGTCGCCGTTGATGGGGATGGAGGCCTTCGACACAGCTGCAGCATCCCCTTCGTCCATGTTCGGCCGGCCGGCACTGTTCCCGTCCTCGGGGAAGCTCATGGAGTCATGGTGTCGCAAGTCGCAACTGCGTGCAGTGGCCCATCGCCGTCGACCTTGAGACTAACATTTGGCCTTCACTGAACTTCGCGCCGTCGTCGATACCTCCTGCCAGGCTGCCTCATGGCAGCGACAAGCAAGACATCGGCAGGAGTCAAAATGCTAGCAGTAGCTGCCGTTTAGTTTTTTTTATGCATTATATAGATGGACCTACAGCTGCCCTGTAAATTTGTTACTACTAGTAGCACATTTATGTTGTCATAAAAATTTACTGTACCTTTTTTTTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3204#0 GACGACGCCCCCTTCACCGCGTGCTTGCCAGCGAGGGCTTGATGGCGGTGGCCACCGACG 60 consensus_3204#1 ------------------------------------------------------------ consensus_3204#0 ACGATGAAGATGTTGAAGAGATGCAGGGCTACCGGATCGGAAGGATTGGTAGCGCCTCAT 120 consensus_3204#1 ------------------------------------------------------------ consensus_3204#0 GCAAGGAAGACAGACTAGACCAGATGGGATCTGCAGCTGGAACACGTAGGTTGTGCACTT 180 consensus_3204#1 ------------------------------------------------------------ consensus_3204#0 CTGCAAACAATGCTGCAGTGTCCCTTCCTCCGGGGTGGGGAAGGTCACGATCGATCGCGT 240 consensus_3204#1 -------------------------TCCTCCGGGGTGGGGAAGGTCACGATCGTCCGCGC 35 **************************** **** consensus_3204#0 TCGGCGGGCGGCAGCGACGGACTGCAGGCCCGGCGACCGGCACGGGCCGCGCCTCTCAGG 300 consensus_3204#1 TCGGCGGGCGGCAGCGACGGACTGCAGGCCCGGCGA--------------GCCTCTCAGG 81 ************************************ ********** consensus_3204#0 TCTTCGTTGATGGGGATGGAGGCCTTCGACACAGCTGCAGCATCCCCTTCGTCCATGTTC 360 consensus_3204#1 TCGCCGTTGATGGGGATGGAGGCCTTCGACACAGCTGCAGCATCCCCTTCGTCCATGTTC 141 ** ******************************************************** consensus_3204#0 GGCCGGCCGGCACTGTTCCCGTCCTCGGGGAAGCTCATGGAGTCATATGGTGTCGCAAGT 420 consensus_3204#1 GGCCGGCCGGCACTGTTCCCGTCCTCGGGGAAGCTCATGGAGTCA--TGGTGTCGCAAGT 199 ********************************************* ************* consensus_3204#0 CGCAACTGTGTGCAGCGGCTCATCGCCGTCGACCTTGAGACTAACATTTGGCCTTCACTG 480 consensus_3204#1 CGCAACTGCGTGCAGTGGCCCATCGCCGTCGACCTTGAGACTAACATTTGGCCTTCACTG 259 ******** ****** *** **************************************** consensus_3204#0 AACTTCGCGCCGTTGTCGATACCTCCTGCCTGGCTGCCTCATAGCAGTGACAAGCAAGAC 540 consensus_3204#1 AACTTCGCGCCGTCGTCGATACCTCCTGCCAGGCTGCCTCATGGCAGCGACAAGCAAGAC 319 ************* **************** *********** **** ************ consensus_3204#0 ATCGGCAGGAGTCAAAATGCTAGCAATAGCTGCCGTTTAGTTTTTTT-ATGCACTATATG 599 consensus_3204#1 ATCGGCAGGAGTCAAAATGCTAGCAGTAGCTGCCGTTTAGTTTTTTTTATGCATTATATA 379 ************************* ********************* ***** ***** consensus_3204#0 GATGGACCAACAGCTGCCCTGTAAATTTTTTACTACTAGTAGCACATTTATGTTGTGATA 659 consensus_3204#1 GATGGACCTACAGCTGCCCTGTAAATTTGTTACTACTAGTAGCACATTTATGTTGTCATA 439 ******** ******************* *************************** *** consensus_3204#0 AAAAATTACTGTACCTTTTTTTTACTATATACCAGCAGCGATCTCG 705 consensus_3204#1 AAAATTTACTGTACCTTTTTTTTAAAAA------------------ 467 **** ******************* * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||