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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3237 cluster # 3237       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3237#0 length = 173 sequences # 1  
consensus_3237#1 length = 149 sequences # 1  

consensusID : consensus_3237#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 173
fasta sequence
                              [TGACTGGACTGAGGAGTGAAGGGGCTATGGGAAACATGGCTGGATGAGTTGTACTCCCTCCATCCCAAAATATAAATATTTTTAGCATAGTGTTAAGTTACACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCC]

[+] EMBL CF318213             [TGACTGGACTGAGGAGTGAAGGGGCTATGGGAAACATGGCTGGATGAGTTGTACTCCCTCCATCCCAAAATATAAATATTTTTAGCATAGTGTTAAGTTACACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCC]


>consensus_3237#0 TGACTGGACTGAGGAGTGAAGGGGCTATGGGAAACATGGCTGGATGAGTTGTACTCCCTC CATCCCAAAATATAAATATTTTTAGCATAGTGTTAAGTTACACTAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCC



consensusID : consensus_3237#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 149
fasta sequence
                              [ATGGATTGAGGAGTAAAAAGGGGGTCAGGGGAAACAAGGGTGGATGAGTTGTACTCCCTCCATCCCAAAAAATAAATATTTTTAGCAAAGGGTTAAGTTCCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF318212             [ATGGATTGAGGAGTAAAAAGGGGGTCAGGGGAAACAAGGGTGGATGAGTTGTACTCCCTCCATCCCAAAAAATAAATATTTTTAGCAAAGGGTTAAGTTCCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_3237#1 ATGGATTGAGGAGTAAAAAGGGGGTCAGGGGAAACAAGGGTGGATGAGTTGTACTCCCTC CATCCCAAAAAATAAATATTTTTAGCAAAGGGTTAAGTTCCCCTAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3237#0      TGACTGGACTGAGGAGTGAA---GGGGCTATGGGAAACATGGCTGGATGAGTTGTACTCC 57
consensus_3237#1      ---ATGGATTGAGGAGTAAAAAGGGGGTCAGGGGAAACAAGGGTGGATGAGTTGTACTCC 57
                          **** ******** **   ****  * ******** ** *****************

consensus_3237#0      CTCCATCCCAAAATATAAATATTTTTAGCATAGTGTTAAGTTACACTAAAAAAAAAAAAA 117
consensus_3237#1      CTCCATCCCAAAAAATAAATATTTTTAGCAAAGGGTTAAGTTCCCCTAAAAAAAAAAAAA 117
                      ************* **************** ** ******** * ***************

consensus_3237#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCC 173
consensus_3237#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------ 149
                      ********************************                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)