These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 173 fasta sequence [TGACTGGACTGAGGAGTGAAGGGGCTATGGGAAACATGGCTGGATGAGTTGTACTCCCTCCATCCCAAAATATAAATATTTTTAGCATAGTGTTAAGTTACACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCC] [+] EMBL CF318213 [TGACTGGACTGAGGAGTGAAGGGGCTATGGGAAACATGGCTGGATGAGTTGTACTCCCTCCATCCCAAAATATAAATATTTTTAGCATAGTGTTAAGTTACACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCC] consensusID : consensus_3237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence [ATGGATTGAGGAGTAAAAAGGGGGTCAGGGGAAACAAGGGTGGATGAGTTGTACTCCCTCCATCCCAAAAAATAAATATTTTTAGCAAAGGGTTAAGTTCCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF318212 [ATGGATTGAGGAGTAAAAAGGGGGTCAGGGGAAACAAGGGTGGATGAGTTGTACTCCCTCCATCCCAAAAAATAAATATTTTTAGCAAAGGGTTAAGTTCCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3237#0 TGACTGGACTGAGGAGTGAA---GGGGCTATGGGAAACATGGCTGGATGAGTTGTACTCC 57 consensus_3237#1 ---ATGGATTGAGGAGTAAAAAGGGGGTCAGGGGAAACAAGGGTGGATGAGTTGTACTCC 57 **** ******** ** **** * ******** ** ***************** consensus_3237#0 CTCCATCCCAAAATATAAATATTTTTAGCATAGTGTTAAGTTACACTAAAAAAAAAAAAA 117 consensus_3237#1 CTCCATCCCAAAAAATAAATATTTTTAGCAAAGGGTTAAGTTCCCCTAAAAAAAAAAAAA 117 ************* **************** ** ******** * *************** consensus_3237#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCC 173 consensus_3237#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------ 149 ******************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||