These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1164 fasta sequence [ATCCCTAACCCTAACCTCCTCCTCCGACCGTCGCGCTCTCTCTCCACCTCCACCACGCCGGCAACCCGCGCCCCCGCCACCCCGGTGGCCGTCCTCTGGGATTTGGCCGCCTCCCGGCCCCCCTCCACCCTCCCCCTCTACGACGCCGCCGTGCGGCTCCACCTCGCCGCCACCTCCTTCGGCCGGGTCCGCCTCTCCGCCGCCTTCGTCCACCCCGGCCACCGCCTCCCTGCCCCGTCTCCGTCCGCCGCCGCGGCCGCCGTGCACCTCTGCCGCGTCTGCGGCCGCCGCTTCCGCGCCCGCGACACGCTGCTCCGCCACTTCGACGCGATCCACGCCCGCGAGCACGCCAAGCGCCTCGCGCGGATCGACTCCTCCCGCGGCGACCGACGCGTGCGCCTCGCCGCCGCGCTCTCCCTCAAGCTCTCCAAGTACGAGAAGGCCGCCCGCGAGCTCACCGCCGCCGCCGACCCCTGCTCCCCCGCCGACGACCTCCGCAGGGCCCGCGTCGCCGTCGAGCTCTCCCCGACCCTGTCCGTCTCCCTCCTTGAGCGCGCCCACGAGGTGCTCGACGGAGGGTCCGTTCGGTGCCTGATGCTGGTCTCGGCCCGCGACGAGCTCGCTCCTCTGCTGCGCCTCGCGAGGGAGAAGGGCGTCCGGTCCGTGGTCGTCGGCGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGGGCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGGGACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTGTTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAGCCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAATCGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAGAGGGAGTACTATCAACCAGGTTGGGGACCTGGTGCTTTGCCTGACCATTTCAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTGCCATTCGTTCGCATGAGATGTGCT] [+] EMBL AK105634 [ATCCCTAACCCTAACCTCCTCCTCCGACCGTCGCGCTCTCTCTCCACCTCCACCACGCCGGCAACCCGCGCCCCCGCCACCCCGGTGGCCGTCCTCTGGGATTTGGCCGCCTCCCGGCCCCCCTCCACCCTCCCCCTCTACGACGCCGCCGTGCGGCTCCACCTCGCCGCCACCTCCTTCGGCCGGGTCCGCCTCTCCGCCGCCTTCGTCCACCCCGGCCACCGCCTCCCTGCCCCGTCTCCGTCCGCCGCCGCGGCCGCCGTGCACCTCTGCCGCGTCTGCGGCCGCCGCTTCCGCGCCCGCGACACGCTGCTCCGCCACTTCGACGCGATCCACGCCCGCGAGCACGCCAAGCGCCTCGCGCGGATCGACTCCTCCCGCGGCGACCGACGCGTGCGCCTCGCCGCCGCGCTCTCCCTCAAGCTCTCCAAGTACGAGAAGGCCGCCCGCGAGCTCACCGCCGCCGCCGACCCCTGCTCCCCCGCCGACGACCTCCGCAGGGCCCGCGTCGCCGTCGAGCTCTCCCCGACCCTGTCCGTCTCCCTCCTTGAGCGCGCCCACGAGGTGCTCGACGGAGGGTCCGTTCGGTGCCTGATGCTGGTCTCGGCCCGCGACGAGCTCGCTCCTCTGCTGCGCCTCGCGAGGGAGAAGGGCGTCCGGTCCGTGGTCGTCGGCGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGGGCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGGGACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTGTTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAGCCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAATCGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAGAGGGAGTACTATCAACCAGGTTGGGGACCTGGTGCTTTGCCTGACCATTTCAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTGCCATTCGTTCGCATGAGATGTGCT] consensusID : consensus_3253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [CAAGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGGGCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGGGACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTGTTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAGCCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAATCGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAGAGGGAGTACTATCAACCAGGTTGGGGAACTACAATGACCTGGTGCTTTGCCTGACCATTTCAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTGCCATTCGTTCGCATGAGATGTGCCTTTCCAATAGCACCAACTCNTGTTTTAACTA] [+] EMBL CA766333 [CAAGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGGGCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGGGACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTGTTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAGCCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAATCGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAGAGGGAGTACTATCAACCAGGTTGGGGAACTACAATGACCTGGTGCTTTGCCTGACCATTTCAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTGCCATTCGTTCGCATGAGATGTGCCTTTCCAATAGCACCAACTCNTGTTTTAACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3253#0 ATCCCTAACCCTAACCTCCTCCTCCGACCGTCGCGCTCTCTCTCCACCTCCACCACGCCG 60 consensus_3253#1 ------------------------------------------------------------ consensus_3253#0 GCAACCCGCGCCCCCGCCACCCCGGTGGCCGTCCTCTGGGATTTGGCCGCCTCCCGGCCC 120 consensus_3253#1 ------------------------------------------------------------ consensus_3253#0 CCCTCCACCCTCCCCCTCTACGACGCCGCCGTGCGGCTCCACCTCGCCGCCACCTCCTTC 180 consensus_3253#1 ------------------------------------------------------------ consensus_3253#0 GGCCGGGTCCGCCTCTCCGCCGCCTTCGTCCACCCCGGCCACCGCCTCCCTGCCCCGTCT 240 consensus_3253#1 ------------------------------------------------------------ consensus_3253#0 CCGTCCGCCGCCGCGGCCGCCGTGCACCTCTGCCGCGTCTGCGGCCGCCGCTTCCGCGCC 300 consensus_3253#1 ------------------------------------------------------------ consensus_3253#0 CGCGACACGCTGCTCCGCCACTTCGACGCGATCCACGCCCGCGAGCACGCCAAGCGCCTC 360 consensus_3253#1 ------------------------------------------------------------ consensus_3253#0 GCGCGGATCGACTCCTCCCGCGGCGACCGACGCGTGCGCCTCGCCGCCGCGCTCTCCCTC 420 consensus_3253#1 ------------------------------------------------------------ consensus_3253#0 AAGCTCTCCAAGTACGAGAAGGCCGCCCGCGAGCTCACCGCCGCCGCCGACCCCTGCTCC 480 consensus_3253#1 ------------------------------------------------------------ consensus_3253#0 CCCGCCGACGACCTCCGCAGGGCCCGCGTCGCCGTCGAGCTCTCCCCGACCCTGTCCGTC 540 consensus_3253#1 ------------------------------------------------------------ consensus_3253#0 TCCCTCCTTGAGCGCGCCCACGAGGTGCTCGACGGAGGGTCCGTTCGGTGCCTGATGCTG 600 consensus_3253#1 ------------------------------------------------------------ consensus_3253#0 GTCTCGGCCCGCGACGAGCTCGCTCCTCTGCTGCGCCTCGCGAGGGAGAAGGGCGTCCGG 660 consensus_3253#1 ------------------------------------------------------------ consensus_3253#0 TCCGTGGTCGTCGGCGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGG 720 consensus_3253#1 ------------CAAGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGG 48 ********************************************* consensus_3253#0 GCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGG 780 consensus_3253#1 GCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGG 108 ************************************************************ consensus_3253#0 GACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTG 840 consensus_3253#1 GACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTG 168 ************************************************************ consensus_3253#0 TTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAG 900 consensus_3253#1 TTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAG 228 ************************************************************ consensus_3253#0 CCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAAT 960 consensus_3253#1 CCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAAT 288 ************************************************************ consensus_3253#0 CGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAG 1020 consensus_3253#1 CGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAG 348 ************************************************************ consensus_3253#0 AGGGAGTACTATCAACCAGGTTGGGGA----------CCTGGTGCTTTGCCTGACCATTT 1070 consensus_3253#1 AGGGAGTACTATCAACCAGGTTGGGGAACTACAATGACCTGGTGCTTTGCCTGACCATTT 408 *************************** *********************** consensus_3253#0 CAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATT 1130 consensus_3253#1 CAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATT 468 ************************************************************ consensus_3253#0 ATTTGGACTGCCATTCGTTCGCATGAGATGTGCT-------------------------- 1164 consensus_3253#1 ATTTGGACTGCCATTCGTTCGCATGAGATGTGCCTTTCCAATAGCACCAACTCNTGTTTT 528 ********************************* consensus_3253#0 ----- consensus_3253#1 AACTA 533 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||