These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CATCTTTGTACAAGTTGTGTCCAAAAAGCAGCTGGGTACCCGTCCGGNATTTCCCGGGGATATCGTCGACCCACGCGGTCCGGGATATTCCTNCGTGANTTGTGCACTGTCGAGAAGNTTCTCATATGCTTCCGACCATTTGTTGGTTTTCGTGAGGTGAGACTTGGTAAGCAAGAACGCAAGACATCCTGGTGGGGATGCCCATTCTACTGCTGTTTTGTTGATTTTGAAACTGCTAGTCATAGCTGCTGATTGCTATGGATGGCTGTGTGCAGAGGCTACAATTCGATGAACATGATCCGCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTACTGGCCCCAGGGGAGGTTCAGGACCTGGTGGTGTCGTGTTAGGCGTTAAGTTGTTCGTCCTGTTTATCAGGCATGATCACATCGAATGTTCAAGTGAAATGATGATAGTTCGTTGGTCGCTCTAGATATATTACTCCATAGTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTNCCACTTTGGTGCCTTGGCTTTGTGAGATGCTTTCTGACTTAACTAGTTATTAAACATCAAGCTGAACACCACAAAAAAAA] [+] EMBL BI806350 [CATCTTTGTACAAGTTGTGTCCAAAAAGCAGCTGGGTACCCGTCCGGNATTTCCCGGGGATATCGTCGACCCACGCGGTCCGGGATATTCCTNCGTGANTTGTGCACTGTCGAGAAGNTTCTCATATGCTTCCGACCATTTGTTGGTTTTCGTGAGGTGAGACTTGGTAAGCAAGAACGCAAGACATCCTGGTGGGGATGCCCATTCTACTGCTGTTTTGTTGATTTTGAAACTGCTAGTCATAGCTGCTGATTGCTATGGATGGCTGTGTGCAGAGGCTACAATTCGATGAACATGATCCGCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTACTGGCCCCAGGGGAGGTTCAGGACCTGGTGGTGTCGTGTTAGGCGTTAAGTTGTTCGTCCTGTTTATCAGGCATGATCACATCGAATGTTCAAGTGAAATGATGATAGTTCGTTGGTCGCTCTAGATATATTACTCCATAGTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTNCCACTTTGGTGCCTTGGCTTTGTGAGATGCTTTCTGACTTAACTAGTTATTAAACATCAAGCTGAACACCACAAAAAAAA] consensusID : consensus_3272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [GTGAGGTGAGACTTGTAAGCAAAGAAGCAAGACATCCTGGTGGGGATCCAATTCTACTCTGTTTTGTTGATTTTGAAACTGCTAGTCAAGCTGCTATTGCTATGGATGCTTTGCAAGGCTACAAATTCGATGAACATGATCGCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTACTGGCCCCAGGGGAGGTTCAGGACCTGGTGGTGGTCGTGTTAGGCGTTAAGTTGTTCGTCCTTTTATCAGGCATGATCACATCGAATGTTCAAGTGAAATGATGATAGTTCGTTGGTCGCTCTAGATATATTACTCCATAGTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTTCCAACTTTGGTGCCTTGGCTTTGTGAGATGCTTTCTGACATTAACTAGTTATTAAACATCAAAGCTGAAAACAATTCGTGGCAAAAAAA] [+] EMBL AU172429 [GTGAGGTGAGACTTGTAAGCAAAGAAGCAAGACATCCTGGTGGGGATCCAATTCTACTCTGTTTTGTTGATTTTGAAACTGCTAGTCAAGCTGCTATTGCTATGGATGCTTTGCAAGGCTACAAATTCGATGAACATGATCGCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTACTGGCCCCAGGGGAGGTTCAGGACCTGGTGGTGGTCGTGTTAGGCGTTAAGTTGTTCGTCCTTTTATCAGGCATGATCACATCGAATGTTCAAGTGAAATGATGATAGTTCGTTGGTCGCTCTAGATATATTACTCCATAGTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTTCCAACTTTGGTGCCTTGGCTTTGTGAGATGCTTTCTGACATTAACTAGTTATTAAACATCAAAGCTGAAAACAATTCGTGGCAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3272#0 CATCTTTGTACAAGTTGTGTCCAAAAAGCAGCTGGGTACCCGTCCGGNATTTCCCGGGGA 60 consensus_3272#1 ------------------------------------------------------------ consensus_3272#0 TATCGTCGACCCACGCGGTCCGGGATATTCCTNCGTGANTTGTGCACTGTCGAGAAGNTT 120 consensus_3272#1 ------------------------------------------------------------ consensus_3272#0 CTCATATGCTTCCGACCATTTGTTGGTTTTCGTGAGGTGAGACTTGGTAAGCAAGAACGC 180 consensus_3272#1 -------------------------------GTGAGGTGAGACTTG-TAAGCAAAGAAGC 28 *************** ******* * ** consensus_3272#0 AAGACATCCTGGTGGGGATGCCCATTCTACTGCTGTTTTGTTGATTTTGAAACTGCTAGT 240 consensus_3272#1 AAGACATCCTGGTGGGGAT-CCAATTCTACT-CTGTTTTGTTGATTTTGAAACTGCTAGT 86 ******************* ** ******** **************************** consensus_3272#0 CATAGCTGCTGATTGCTATGGATGGCTGTGTGCAGAGGCTACAA-TTCGATGAACATGAT 299 consensus_3272#1 CA-AGCTGCT-ATTGCTATGGATGCTT---TGCA-AGGCTACAAATTCGATGAACATGAT 140 ** ******* ************* * **** ********* *************** consensus_3272#0 CCGCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTACTGGCCCCAGGGGAGGTTC 359 consensus_3272#1 C-GCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTACTGGCCCCAGGGGAGGTTC 199 * ********************************************************** consensus_3272#0 AGGACCTGGTGGTG-TCGTGTTAGGCGTTAAGTTGTTCGTCCTGTTTATCAGGCATGATC 418 consensus_3272#1 AGGACCTGGTGGTGGTCGTGTTAGGCGTTAAGTTGTTCGTCCT-TTTATCAGGCATGATC 258 ************** **************************** **************** consensus_3272#0 ACATCGAATGTTCAAGTGAAATGATGATAGTTCGTTGGTCGCTCTAGATATATTACTCCA 478 consensus_3272#1 ACATCGAATGTTCAAGTGAAATGATGATAGTTCGTTGGTCGCTCTAGATATATTACTCCA 318 ************************************************************ consensus_3272#0 TAGTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTNCCA-CTTTGGTGCCTTGGCTTTG 537 consensus_3272#1 TAGTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTTCCAACTTTGGTGCCTTGGCTTTG 378 ************************************ *** ******************* consensus_3272#0 TGAGATGCTTTCTGAC-TTAACTAGTTATTAAACATCAA-GCTGAACAC----CACAAAA 591 consensus_3272#1 TGAGATGCTTTCTGACATTAACTAGTTATTAAACATCAAAGCTGAAAACAATTCGTGGCA 438 **************** ********************** ****** ** * * consensus_3272#0 AAAA-- 595 consensus_3272#1 AAAAAA 444 **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||