cluster # 3317

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Oryza sativa
cluster # 3317 cluster # 3317 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3317#0 length = 1218 sequences # 1

consensus_3317#1 length = 1151 sequences # 1

consensusID : consensus_3317#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1218
fasta sequence

                              [CAGTCCGACTACCACACACTCGTCGTCCCCTCAATTGCAGTCAATATGTTCGCTGCTCGGCAAGCTTTCTCCCAGGCCTCGCGCCGCACCTTTTCCTCGTCGGCCCGCCAGTCGTCAAAGGTCACCGTCCTCGGCGCTGCCGGTGGAATTGGACAACCGTTGTCTCTCCTCTTGAAGCTTAACCCAAGAGTTAGCAAGCTTTCCCTATACGATATTCGCCTTGCTCCCGGTGTCGCTGCTGATATCGGCCACATCAACACCAAGAGCGAGGTCACCGGCCACGAGCCCACTCCCTCAGGTCTTGCCGAGGCCCTCAAGGGTGCTGAGATTGTCGTCATCCCTGCTGGTGTCCCCCGCAAGCCTGGCATGACCCGTGATGATCTGTTCAATACCAACGCCTCCATCGTCCGCGACCTCGCCAAGGCTGCTGCAGACCACGCCCCCGAGGCCAACATCCTTATCATCTCCAACCCAGTTAACTCCACCGTCCCCATCACCGCCGAGGTCTTCAAGTCCAAGGGTGTCTACAACCCCAAGCGCCTCTTTGGTGTCACCACACTCGACGTTGTCCGTGCCTCGCGCTTCATCTCCCAGATCAAGAACACCGACCCTGCCAGCGAAAACATCACTGTAGTCGGTGGCCACTCTGGCGCAACCATTGTTCCTCTCCTGTCCCAGGCTGGTTTCAACCTTGAGGGTGAGAAGCTCGACGCCTACGTCAACCGCGTCCAATTCGGTGGTGACGAGGTTGTCAAGGCTAAGGATGGTGCTGGCTCTGCCACTCTCTCCATGGCCATGGCTGGAGCTCGCTTCACCGAGTCCCTCCTCAAGGCTGCCCAGGGTCAAAAGAACGTCATCGAGCCCACCTTTGTCGACTCTCCTCTCTACAAAGACCAAGGCTGCGAGTACTTTGCCTCCAACGTCGAGCTCGGCCCCAACGGTGTCGAGAAGATTCACCCGGTCGGCAAGATTACGGATTACGAGCAGAAGCTCCTCGATGTTTGCATCAGCGACCTCGCCAAAAACATCAAGAAGGGTGTCGACTTTGCCAAGCAAAACCCATAAATTAAAAGTGTTTGTGGGCGTTGAGTGATGGAAGCGGTGTACACTAGTGATTGACCATTGGGCTTGGATCGGACTGGGTACAGGGTGTTACATCATTTAGCGATGTGTGTAGATTTATGAGCTATGCTAGCACATGTTAAACTTCAAAAAAAA]

[+] EMBL AK110568             [CAGTCCGACTACCACACACTCGTCGTCCCCTCAATTGCAGTCAATATGTTCGCTGCTCGGCAAGCTTTCTCCCAGGCCTCGCGCCGCACCTTTTCCTCGTCGGCCCGCCAGTCGTCAAAGGTCACCGTCCTCGGCGCTGCCGGTGGAATTGGACAACCGTTGTCTCTCCTCTTGAAGCTTAACCCAAGAGTTAGCAAGCTTTCCCTATACGATATTCGCCTTGCTCCCGGTGTCGCTGCTGATATCGGCCACATCAACACCAAGAGCGAGGTCACCGGCCACGAGCCCACTCCCTCAGGTCTTGCCGAGGCCCTCAAGGGTGCTGAGATTGTCGTCATCCCTGCTGGTGTCCCCCGCAAGCCTGGCATGACCCGTGATGATCTGTTCAATACCAACGCCTCCATCGTCCGCGACCTCGCCAAGGCTGCTGCAGACCACGCCCCCGAGGCCAACATCCTTATCATCTCCAACCCAGTTAACTCCACCGTCCCCATCACCGCCGAGGTCTTCAAGTCCAAGGGTGTCTACAACCCCAAGCGCCTCTTTGGTGTCACCACACTCGACGTTGTCCGTGCCTCGCGCTTCATCTCCCAGATCAAGAACACCGACCCTGCCAGCGAAAACATCACTGTAGTCGGTGGCCACTCTGGCGCAACCATTGTTCCTCTCCTGTCCCAGGCTGGTTTCAACCTTGAGGGTGAGAAGCTCGACGCCTACGTCAACCGCGTCCAATTCGGTGGTGACGAGGTTGTCAAGGCTAAGGATGGTGCTGGCTCTGCCACTCTCTCCATGGCCATGGCTGGAGCTCGCTTCACCGAGTCCCTCCTCAAGGCTGCCCAGGGTCAAAAGAACGTCATCGAGCCCACCTTTGTCGACTCTCCTCTCTACAAAGACCAAGGCTGCGAGTACTTTGCCTCCAACGTCGAGCTCGGCCCCAACGGTGTCGAGAAGATTCACCCGGTCGGCAAGATTACGGATTACGAGCAGAAGCTCCTCGATGTTTGCATCAGCGACCTCGCCAAAAACATCAAGAAGGGTGTCGACTTTGCCAAGCAAAACCCATAAATTAAAAGTGTTTGTGGGCGTTGAGTGATGGAAGCGGTGTACACTAGTGATTGACCATTGGGCTTGGATCGGACTGGGTACAGGGTGTTACATCATTTAGCGATGTGTGTAGATTTATGAGCTATGCTAGCACATGTTAAACTTCAAAAAAAA]




>consensus_3317#0
CAGTCCGACTACCACACACTCGTCGTCCCCTCAATTGCAGTCAATATGTTCGCTGCTCGG
CAAGCTTTCTCCCAGGCCTCGCGCCGCACCTTTTCCTCGTCGGCCCGCCAGTCGTCAAAG
GTCACCGTCCTCGGCGCTGCCGGTGGAATTGGACAACCGTTGTCTCTCCTCTTGAAGCTT
AACCCAAGAGTTAGCAAGCTTTCCCTATACGATATTCGCCTTGCTCCCGGTGTCGCTGCT
GATATCGGCCACATCAACACCAAGAGCGAGGTCACCGGCCACGAGCCCACTCCCTCAGGT
CTTGCCGAGGCCCTCAAGGGTGCTGAGATTGTCGTCATCCCTGCTGGTGTCCCCCGCAAG
CCTGGCATGACCCGTGATGATCTGTTCAATACCAACGCCTCCATCGTCCGCGACCTCGCC
AAGGCTGCTGCAGACCACGCCCCCGAGGCCAACATCCTTATCATCTCCAACCCAGTTAAC
TCCACCGTCCCCATCACCGCCGAGGTCTTCAAGTCCAAGGGTGTCTACAACCCCAAGCGC
CTCTTTGGTGTCACCACACTCGACGTTGTCCGTGCCTCGCGCTTCATCTCCCAGATCAAG
AACACCGACCCTGCCAGCGAAAACATCACTGTAGTCGGTGGCCACTCTGGCGCAACCATT
GTTCCTCTCCTGTCCCAGGCTGGTTTCAACCTTGAGGGTGAGAAGCTCGACGCCTACGTC
AACCGCGTCCAATTCGGTGGTGACGAGGTTGTCAAGGCTAAGGATGGTGCTGGCTCTGCC
ACTCTCTCCATGGCCATGGCTGGAGCTCGCTTCACCGAGTCCCTCCTCAAGGCTGCCCAG
GGTCAAAAGAACGTCATCGAGCCCACCTTTGTCGACTCTCCTCTCTACAAAGACCAAGGC
TGCGAGTACTTTGCCTCCAACGTCGAGCTCGGCCCCAACGGTGTCGAGAAGATTCACCCG
GTCGGCAAGATTACGGATTACGAGCAGAAGCTCCTCGATGTTTGCATCAGCGACCTCGCC
AAAAACATCAAGAAGGGTGTCGACTTTGCCAAGCAAAACCCATAAATTAAAAGTGTTTGT
GGGCGTTGAGTGATGGAAGCGGTGTACACTAGTGATTGACCATTGGGCTTGGATCGGACT
GGGTACAGGGTGTTACATCATTTAGCGATGTGTGTAGATTTATGAGCTATGCTAGCACAT
GTTAAACTTCAAAAAAAA

consensusID : consensus_3317#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1151
fasta sequence

                              [CTTCCGTCCAACCCAGTCTCCATTTCCCTCATCTCCATCACATTCATCATGTTCGCTGCTAGGCAGGCTTTCTTCCAGGCCCAGCGCCGCTGCTTCTCGGCTTCGGCCCGCCAGAACTCCAAGGTCACTGTTCTCGGTGCTGCCGGTGGCATTGGCCAGCCATTGTCGCTGCTGCTCAAGCTGAACCCCAGGGTTAGCAAGCTCGCCCTCTACGATATCCGCCTTGCTCCAGGTGTCGCTGCCGATATTGGCCACATCAACACCAAGGGCGAGGTCACTGGCCATGACGCCACCCCCTCCGGTCTCGCTGAGGCCCTCAAGGGTGCCGAGATTGTCCTCATCCCCGCTGGTGTTCCCCGCAAGCCTGGCATGACCCGTGATGACCTGTTCAACACCAACGCCTCCATTGTCCGCGACCTTGCCAAGGCTGCTGCTGACCACGCTCCCGAGGCCAACATCCTCATCATCTCCAACCCCGTCAACTCTACCGTCCCCATCACTGCCGAGGTTTTCAAGTCCAAGGGTGTCTACAACCCCAAGCGCCTCTTCGGTGTCACCACCCTCGATGTCGTCCGTGCCTCGCGCTTCATCTCGCAGCTGAAGAACACCGACCCCGCCTCCGAGAACATTACCGTCATTGGTGGTCACTCTGGCGCTACCATTGTTCCCCTCCTCTCCCAGTCCGGCTACAACCTCGAGGGCACCAAGCTCGACGAGTACGTCAAGCGCGTCCAGTTTGGTGGTGACGAAGTCGTCCAGGCCAAGGACGGTGCCGGCTCTGCCACTCTCTCCATGGCCATGGCTGGTGCCCGCTTCGCCGAGTCTCTGCTCAAGGCCGCCCAGGGCGAGAAGAACGTCATTGAGCCCACCTTTGCCGACTCTCCTCTGTTCAAGGACCAGGGCTGCGACTACTTCGCCTCCAACGTCGAGCTCGGCCCCAACGGTGTTGAGAAGATCCACCCCGTTGGCAAGATCACCGACTACGAGCAGAAGCTCCTCGATGCCTGCGTCTCTGACCTCAGCAAGAACATCAAGAAGGGTGTTGAGTGGGCCAAGGCCAACCCATAGATTCGGTAGTGGAGACATGGGTGACGAATGTATACTAGTAATGACATGAGGCTTTTGGGATCTGGATTGGAATAAATTCTTTT]

[+] EMBL AK108834             [CTTCCGTCCAACCCAGTCTCCATTTCCCTCATCTCCATCACATTCATCATGTTCGCTGCTAGGCAGGCTTTCTTCCAGGCCCAGCGCCGCTGCTTCTCGGCTTCGGCCCGCCAGAACTCCAAGGTCACTGTTCTCGGTGCTGCCGGTGGCATTGGCCAGCCATTGTCGCTGCTGCTCAAGCTGAACCCCAGGGTTAGCAAGCTCGCCCTCTACGATATCCGCCTTGCTCCAGGTGTCGCTGCCGATATTGGCCACATCAACACCAAGGGCGAGGTCACTGGCCATGACGCCACCCCCTCCGGTCTCGCTGAGGCCCTCAAGGGTGCCGAGATTGTCCTCATCCCCGCTGGTGTTCCCCGCAAGCCTGGCATGACCCGTGATGACCTGTTCAACACCAACGCCTCCATTGTCCGCGACCTTGCCAAGGCTGCTGCTGACCACGCTCCCGAGGCCAACATCCTCATCATCTCCAACCCCGTCAACTCTACCGTCCCCATCACTGCCGAGGTTTTCAAGTCCAAGGGTGTCTACAACCCCAAGCGCCTCTTCGGTGTCACCACCCTCGATGTCGTCCGTGCCTCGCGCTTCATCTCGCAGCTGAAGAACACCGACCCCGCCTCCGAGAACATTACCGTCATTGGTGGTCACTCTGGCGCTACCATTGTTCCCCTCCTCTCCCAGTCCGGCTACAACCTCGAGGGCACCAAGCTCGACGAGTACGTCAAGCGCGTCCAGTTTGGTGGTGACGAAGTCGTCCAGGCCAAGGACGGTGCCGGCTCTGCCACTCTCTCCATGGCCATGGCTGGTGCCCGCTTCGCCGAGTCTCTGCTCAAGGCCGCCCAGGGCGAGAAGAACGTCATTGAGCCCACCTTTGCCGACTCTCCTCTGTTCAAGGACCAGGGCTGCGACTACTTCGCCTCCAACGTCGAGCTCGGCCCCAACGGTGTTGAGAAGATCCACCCCGTTGGCAAGATCACCGACTACGAGCAGAAGCTCCTCGATGCCTGCGTCTCTGACCTCAGCAAGAACATCAAGAAGGGTGTTGAGTGGGCCAAGGCCAACCCATAGATTCGGTAGTGGAGACATGGGTGACGAATGTATACTAGTAATGACATGAGGCTTTTGGGATCTGGATTGGAATAAATTCTTTT]




>consensus_3317#1
CTTCCGTCCAACCCAGTCTCCATTTCCCTCATCTCCATCACATTCATCATGTTCGCTGCT
AGGCAGGCTTTCTTCCAGGCCCAGCGCCGCTGCTTCTCGGCTTCGGCCCGCCAGAACTCC
AAGGTCACTGTTCTCGGTGCTGCCGGTGGCATTGGCCAGCCATTGTCGCTGCTGCTCAAG
CTGAACCCCAGGGTTAGCAAGCTCGCCCTCTACGATATCCGCCTTGCTCCAGGTGTCGCT
GCCGATATTGGCCACATCAACACCAAGGGCGAGGTCACTGGCCATGACGCCACCCCCTCC
GGTCTCGCTGAGGCCCTCAAGGGTGCCGAGATTGTCCTCATCCCCGCTGGTGTTCCCCGC
AAGCCTGGCATGACCCGTGATGACCTGTTCAACACCAACGCCTCCATTGTCCGCGACCTT
GCCAAGGCTGCTGCTGACCACGCTCCCGAGGCCAACATCCTCATCATCTCCAACCCCGTC
AACTCTACCGTCCCCATCACTGCCGAGGTTTTCAAGTCCAAGGGTGTCTACAACCCCAAG
CGCCTCTTCGGTGTCACCACCCTCGATGTCGTCCGTGCCTCGCGCTTCATCTCGCAGCTG
AAGAACACCGACCCCGCCTCCGAGAACATTACCGTCATTGGTGGTCACTCTGGCGCTACC
ATTGTTCCCCTCCTCTCCCAGTCCGGCTACAACCTCGAGGGCACCAAGCTCGACGAGTAC
GTCAAGCGCGTCCAGTTTGGTGGTGACGAAGTCGTCCAGGCCAAGGACGGTGCCGGCTCT
GCCACTCTCTCCATGGCCATGGCTGGTGCCCGCTTCGCCGAGTCTCTGCTCAAGGCCGCC
CAGGGCGAGAAGAACGTCATTGAGCCCACCTTTGCCGACTCTCCTCTGTTCAAGGACCAG
GGCTGCGACTACTTCGCCTCCAACGTCGAGCTCGGCCCCAACGGTGTTGAGAAGATCCAC
CCCGTTGGCAAGATCACCGACTACGAGCAGAAGCTCCTCGATGCCTGCGTCTCTGACCTC
AGCAAGAACATCAAGAAGGGTGTTGAGTGGGCCAAGGCCAACCCATAGATTCGGTAGTGG
AGACATGGGTGACGAATGTATACTAGTAATGACATGAGGCTTTTGGGATCTGGATTGGAA
TAAATTCTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3317#0      ---CAGTCCGACTACCACACACTCGTCGTCCCCTCAATTGCAGTCAATATGTTCGCTGCT 57
consensus_3317#1      CTTCCGTCCAACCCAGTCTCCATTTCCCTCATCTCCATCACATTCATCATGTTCGCTGCT 60
                         * **** **     * *  *   * **  *** **  ** ***  ************

consensus_3317#0      CGGCAAGCTTTCTCCCAGGCCTCGCGCCGCACCTTTTCCTCGTCGGCCCGCCAGTCGTCA 117
consensus_3317#1      AGGCAGGCTTTCTTCCAGGCCCAGCGCCGCTGCTTCTCGGCTTCGGCCCGCCAGAACTCC 120
                       **** ******* *******  *******  *** **  * ************   ** 

consensus_3317#0      AAGGTCACCGTCCTCGGCGCTGCCGGTGGAATTGGACAACCGTTGTCTCTCCTCTTGAAG 177
consensus_3317#1      AAGGTCACTGTTCTCGGTGCTGCCGGTGGCATTGGCCAGCCATTGTCGCTGCTGCTCAAG 180
                      ******** ** ***** *********** ***** ** ** ***** ** **  * ***

consensus_3317#0      CTTAACCCAAGAGTTAGCAAGCTTTCCCTATACGATATTCGCCTTGCTCCCGGTGTCGCT 237
consensus_3317#1      CTGAACCCCAGGGTTAGCAAGCTCGCCCTCTACGATATCCGCCTTGCTCCAGGTGTCGCT 240
                      ** ***** ** ***********  **** ******** *********** *********

consensus_3317#0      GCTGATATCGGCCACATCAACACCAAGAGCGAGGTCACCGGCCACGAGCCCACTCCCTCA 297
consensus_3317#1      GCCGATATTGGCCACATCAACACCAAGGGCGAGGTCACTGGCCATGACGCCACCCCCTCC 300
                      ** ***** ****************** ********** ***** **  **** ***** 

consensus_3317#0      GGTCTTGCCGAGGCCCTCAAGGGTGCTGAGATTGTCGTCATCCCTGCTGGTGTCCCCCGC 357
consensus_3317#1      GGTCTCGCTGAGGCCCTCAAGGGTGCCGAGATTGTCCTCATCCCCGCTGGTGTTCCCCGC 360
                      ***** ** ***************** ********* ******* ******** ******

consensus_3317#0      AAGCCTGGCATGACCCGTGATGATCTGTTCAATACCAACGCCTCCATCGTCCGCGACCTC 417
consensus_3317#1      AAGCCTGGCATGACCCGTGATGACCTGTTCAACACCAACGCCTCCATTGTCCGCGACCTT 420
                      *********************** ******** ************** *********** 

consensus_3317#0      GCCAAGGCTGCTGCAGACCACGCCCCCGAGGCCAACATCCTTATCATCTCCAACCCAGTT 477
consensus_3317#1      GCCAAGGCTGCTGCTGACCACGCTCCCGAGGCCAACATCCTCATCATCTCCAACCCCGTC 480
                      ************** ******** ***************** ************** ** 

consensus_3317#0      AACTCCACCGTCCCCATCACCGCCGAGGTCTTCAAGTCCAAGGGTGTCTACAACCCCAAG 537
consensus_3317#1      AACTCTACCGTCCCCATCACTGCCGAGGTTTTCAAGTCCAAGGGTGTCTACAACCCCAAG 540
                      ***** ************** ******** ******************************

consensus_3317#0      CGCCTCTTTGGTGTCACCACACTCGACGTTGTCCGTGCCTCGCGCTTCATCTCCCAGATC 597
consensus_3317#1      CGCCTCTTCGGTGTCACCACCCTCGATGTCGTCCGTGCCTCGCGCTTCATCTCGCAGCTG 600
                      ******** *********** ***** ** *********************** *** * 

consensus_3317#0      AAGAACACCGACCCTGCCAGCGAAAACATCACTGTAGTCGGTGGCCACTCTGGCGCAACC 657
consensus_3317#1      AAGAACACCGACCCCGCCTCCGAGAACATTACCGTCATTGGTGGTCACTCTGGCGCTACC 660
                      ************** ***  *** ***** ** **  * ***** *********** ***

consensus_3317#0      ATTGTTCCTCTCCTGTCCCAGGCTGGTTTCAACCTTGAGGGTGAGAAGCTCGACGCCTAC 717
consensus_3317#1      ATTGTTCCCCTCCTCTCCCAGTCCGGCTACAACCTCGAGGGCACCAAGCTCGACGAGTAC 720
                      ******** ***** ****** * ** * ****** *****    **********  ***

consensus_3317#0      GTCAACCGCGTCCAATTCGGTGGTGACGAGGTTGTCAAGGCTAAGGATGGTGCTGGCTCT 777
consensus_3317#1      GTCAAGCGCGTCCAGTTTGGTGGTGACGAAGTCGTCCAGGCCAAGGACGGTGCCGGCTCT 780
                      ***** ******** ** *********** ** *** **** ***** ***** ******

consensus_3317#0      GCCACTCTCTCCATGGCCATGGCTGGAGCTCGCTTCACCGAGTCCCTCCTCAAGGCTGCC 837
consensus_3317#1      GCCACTCTCTCCATGGCCATGGCTGGTGCCCGCTTCGCCGAGTCTCTGCTCAAGGCCGCC 840
                      ************************** ** ****** ******* ** ******** ***

consensus_3317#0      CAGGGTCAAAAGAACGTCATCGAGCCCACCTTTGTCGACTCTCCTCTCTACAAAGACCAA 897
consensus_3317#1      CAGGGCGAGAAGAACGTCATTGAGCCCACCTTTGCCGACTCTCCTCTGTTCAAGGACCAG 900
                      *****  * *********** ************* ************ * *** ***** 

consensus_3317#0      GGCTGCGAGTACTTTGCCTCCAACGTCGAGCTCGGCCCCAACGGTGTCGAGAAGATTCAC 957
consensus_3317#1      GGCTGCGACTACTTCGCCTCCAACGTCGAGCTCGGCCCCAACGGTGTTGAGAAGATCCAC 960
                      ******** ***** ******************************** ******** ***

consensus_3317#0      CCGGTCGGCAAGATTACGGATTACGAGCAGAAGCTCCTCGATGTTTGCATCAGCGACCTC 1017
consensus_3317#1      CCCGTTGGCAAGATCACCGACTACGAGCAGAAGCTCCTCGATGCCTGCGTCTCTGACCTC 1020
                      ** ** ******** ** ** **********************  *** **   ******

consensus_3317#0      GCCAAAAACATCAAGAAGGGTGTCGACTTTGCCAAGCAAAACCCATAAATTAAAAGTGTT 1077
consensus_3317#1      AGCAAGAACATCAAGAAGGGTGTTGAGTGGGCCAAGGCCAACCCATAGATT-----CGGT 1075
                        *** ***************** ** *  ******   ******** ***      * *

consensus_3317#0      TGTGGGCGT-TGAGTGATGGAAGCGGTGTACACTAGTGATTGACCATTGGGCTT---GGA 1133
consensus_3317#1      AGTGGAGACATGGGTGACGAA-----TGTATACTAGTAATGA--CATGAGGCTTTTGGGA 1128
                       ****     ** **** * *     **** ****** **    ***  *****   ***

consensus_3317#0      TCGGACTGGGTACAGGGTGTTACATCATTTAGCGATGTGTGTAGATTTATGAGCTATGCT 1193
consensus_3317#1      TCTGGATTGGAATAAATTCTTTT------------------------------------- 1151
                      ** *  * ** * *   * **                                       

consensus_3317#0      AGCACATGTTAAACTTCAAAAAAAA 1218
consensus_3317#1      -------------------------