These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1432 fasta sequence [ATTTCAGCGACCCCGCTTCGACGGCGGCGGCGGCGGCGCCGCCGGGCGGCGGACTACGTGGCGACGGCCGTCCAGTAGCTGGTCATGCAGGCGCTGGCCGGCGTGCTGATGATCCGCGCCCACTCCCACCCGCCGCCGCACCCGTCCGCTCCTCGCCGCAGCTCCGCCAGCTGCAACCACGAGTCCACGACCAAAAAAAAAAGCTCCGAAAATGGGCTGCTCAGTCAAGATGGTTTCTGACGCATTGGACCACATAAAAGAGAGATAAGGCACATCCTTCCTGTTTACTTGACATGGGGGCAGATTCCGTTGAGGCTAAAATATCCACATCAGGACTGGATCATTTCTATCTGCTTGATCATTGTCATCGATCTCTGCATCCTTCTCCTCCTGACTAGAAATTGAAGCACGGCCATGTCTCCTTTCCGGTTGCTCGATTGATCCTACCTTCGTGCAGGTATCGTTGATGCAGGACATCAAATTGAAAGGCATGCTTATTTCCACCCAGGATGTAAGGGGCACCATGAATGAACAGAAGCAGCAGACTCCAGGAGAACACATGCTACAAAACATAGGAACCACAACAGGAATCTGCAACTGCAAGATGGATCATCCATGGCCATCTTATAGGACTTATCCTCGATGTTGATGCGTGCCGGCGTCCAAGGAGAATGAAGTATGGGAAGGACCCCCTCTTGTACTTGCTGTCCTGCAGCTCAAAACAAATAGGTATGCAGTGCAAATAAATGTTGCAGAGAAGAGGAAGAGAGAGGAGGTATGGAGGAGGGTACCAATATCTCGCTGTGAGACTCAACTGTCATTTGATGAAGGCCATAAAGTCATTAGCACAGAAGCTGGGTTCTTGAAAAACATGGAAAAGGAGCTCCCGTTTGCTGATATCAGACCTGGGAATTTCTTTTACACCTGCTTTGTCATCACTTGCTGAAAAAGAATATCAAGATCTGATCGACTGATTGATCACCCTGAGTCAGCTAAAGCTTGCGGTCAGGGAGGGGTAAGTGCAACGTGAGGCCTGCGTCACTCGCTCTTGACTTGTACCGCGATCCATTATTGGTGGCATGGAAATTCTTAATCCAATCACAATAATCAGCAGCCAGCCAAGCAAAACGAGGAAGGTGTTCTTGCCTACGCTGTGACCATAGCACAGCAGTACAGAACTACAGCGCGGTGCAATCCAACTCCTGTTTCACTCAACTAGTCAAGCTTCTCTTCCTGCTGGATGATCGATCGGCTCGTCAGAAGCCATGCAGGCAAGGTAATTAATTACATTACACACTCCCATTTAGGGCCCCTTTGAATAGTCGGATTGAGAAAGCGTAGGAATAGGAAAAACGTAGGATTTTGATAGGAATGTAAGTGTAAAACAGAGGATTGCAAAACACAGAAAAAACACAGGAATGAACGTTTGATT] [+] EMBL AK119475 [ATTTCAGCGACCCCGCTTCGACGGCGGCGGCGGCGGCGCCGCCGGGCGGCGGACTACGTGGCGACGGCCGTCCAGTAGCTGGTCATGCAGGCGCTGGCCGGCGTGCTGATGATCCGCGCCCACTCCCACCCGCCGCCGCACCCGTCCGCTCCTCGCCGCAGCTCCGCCAGCTGCAACCACGAGTCCACGACCAAAAAAAAAAGCTCCGAAAATGGGCTGCTCAGTCAAGATGGTTTCTGACGCATTGGACCACATAAAAGAGAGATAAGGCACATCCTTCCTGTTTACTTGACATGGGGGCAGATTCCGTTGAGGCTAAAATATCCACATCAGGACTGGATCATTTCTATCTGCTTGATCATTGTCATCGATCTCTGCATCCTTCTCCTCCTGACTAGAAATTGAAGCACGGCCATGTCTCCTTTCCGGTTGCTCGATTGATCCTACCTTCGTGCAGGTATCGTTGATGCAGGACATCAAATTGAAAGGCATGCTTATTTCCACCCAGGATGTAAGGGGCACCATGAATGAACAGAAGCAGCAGACTCCAGGAGAACACATGCTACAAAACATAGGAACCACAACAGGAATCTGCAACTGCAAGATGGATCATCCATGGCCATCTTATAGGACTTATCCTCGATGTTGATGCGTGCCGGCGTCCAAGGAGAATGAAGTATGGGAAGGACCCCCTCTTGTACTTGCTGTCCTGCAGCTCAAAACAAATAGGTATGCAGTGCAAATAAATGTTGCAGAGAAGAGGAAGAGAGAGGAGGTATGGAGGAGGGTACCAATATCTCGCTGTGAGACTCAACTGTCATTTGATGAAGGCCATAAAGTCATTAGCACAGAAGCTGGGTTCTTGAAAAACATGGAAAAGGAGCTCCCGTTTGCTGATATCAGACCTGGGAATTTCTTTTACACCTGCTTTGTCATCACTTGCTGAAAAAGAATATCAAGATCTGATCGACTGATTGATCACCCTGAGTCAGCTAAAGCTTGCGGTCAGGGAGGGGTAAGTGCAACGTGAGGCCTGCGTCACTCGCTCTTGACTTGTACCGCGATCCATTATTGGTGGCATGGAAATTCTTAATCCAATCACAATAATCAGCAGCCAGCCAAGCAAAACGAGGAAGGTGTTCTTGCCTACGCTGTGACCATAGCACAGCAGTACAGAACTACAGCGCGGTGCAATCCAACTCCTGTTTCACTCAACTAGTCAAGCTTCTCTTCCTGCTGGATGATCGATCGGCTCGTCAGAAGCCATGCAGGCAAGGTAATTAATTACATTACACACTCCCATTTAGGGCCCCTTTGAATAGTCGGATTGAGAAAGCGTAGGAATAGGAAAAACGTAGGATTTTGATAGGAATGTAAGTGTAAAACAGAGGATTGCAAAACACAGAAAAAACACAGGAATGAACGTTTGATT] consensusID : consensus_332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [TTTTTTTTTTTTATTGGCTATTGATCTTTGCTTAACAATTTCAAATTTTGGGCACATGTAATATAAGGTACTGCAACAAAACAACAGAATTGGGTTGGGGAAAAGAAGGGAGGGGAAGGGATAAAACTACTGTTCTGTTACAGAACTTCAACAGTTGAAGAAAAACATACAACGGTAAAGATGACCAAGGAAGGGTATTGTAACAGTTATGATATGAGCATAGTTCTGTCATACAGATAGAGATGCAAGTTACCTGATAGAGGATTCCAGCCTCTGAGAGAGCAAGAATAGTTGTATTCACAATGAAAGTTGCTGTAGCATAGCCAACTGAAATTGGTAGTTCATGAGGAGCAATCACCCATGCCAGCCCATTCCAGAACCTCTCATAAATTGATCCACTTTGCCCTGTCACCCACACAGATAATTCTGACATGCGCGTCAAGGAAATCCTTTTTCTTATGGGCAGGACTGGATCATTTCTATCTGCTTGATCATTGTCATCGATCTCTGCATCCTTCTCCTCCTGACTAGAAGTTGAAGCACGGCCATGTCTCCTTTCCGGTTGCTCGATTGATCCTACCTTCGTGCAGGTATCGTTGATGCAGGACATCANATTGAAAGGCATGCTTATTTCCACCCAGGTATTACTCTGTTCCTGGTACTCCCAGAACTTGNTTGTCTTCTGCTTAAACT] [+] EMBL CA760154 [TTTTTTTTTTTTATTGGCTATTGATCTTTGCTTAACAATTTCAAATTTTGGGCACATGTAATATAAGGTACTGCAACAAAACAACAGAATTGGGTTGGGGAAAAGAAGGGAGGGGAAGGGATAAAACTACTGTTCTGTTACAGAACTTCAACAGTTGAAGAAAAACATACAACGGTAAAGATGACCAAGGAAGGGTATTGTAACAGTTATGATATGAGCATAGTTCTGTCATACAGATAGAGATGCAAGTTACCTGATAGAGGATTCCAGCCTCTGAGAGAGCAAGAATAGTTGTATTCACAATGAAAGTTGCTGTAGCATAGCCAACTGAAATTGGTAGTTCATGAGGAGCAATCACCCATGCCAGCCCATTCCAGAACCTCTCATAAATTGATCCACTTTGCCCTGTCACCCACACAGATAATTCTGACATGCGCGTCAAGGAAATCCTTTTTCTTATGGGCAGGACTGGATCATTTCTATCTGCTTGATCATTGTCATCGATCTCTGCATCCTTCTCCTCCTGACTAGAAGTTGAAGCACGGCCATGTCTCCTTTCCGGTTGCTCGATTGATCCTACCTTCGTGCAGGTATCGTTGATGCAGGACATCANATTGAAAGGCATGCTTATTTCCACCCAGGTATTACTCTGTTCCTGGTACTCCCAGAACTTGNTTGTCTTCTGCTTAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_332#0 ATTTCAGCGACCCCGCTTCGACGGCGGCGGCGGCGGCGCCGCCGGGCGGCGGACTACGTG 60 consensus_332#1 ------------------------------------------------------------ consensus_332#0 GCGACGGCCGTCCAGTAGCTGGTCATGCAGGCGCTGGCCGGCGTGCTGATGATCCGCGCC 120 consensus_332#1 ------------------------------------------------------------ consensus_332#0 CACTCCCACCCGCCGCCGCACCCGTCCGCTCCTCGCCGCAGCTCCGCCAGCTGCAACCAC 180 consensus_332#1 ------------------------------------------------------------ consensus_332#0 GAGTCCACGACCAAAAAAAAAAGCTCCGAAAATGGGCTGCTCAGTCAAGATGGTTTCTGA 240 consensus_332#1 ------------------------------------------------------------ consensus_332#0 CGCATTGGACCACATAAAAGAGAGATAAGGCACATCCTTCCTGTTTACTTGACATGGGGG 300 consensus_332#1 ------------------------------------------------------------ consensus_332#0 CAGATTCCGTTGAGGCTAAAATATCCACATCAGGACTGGATCATTTCTATCTGCTTGATC 360 consensus_332#1 ------------------------------------------------------------ consensus_332#0 ATTGTCATCGATCTCTGCATCCTTCTCCTCCTGACTAGAAATTGAAGCACGGCCATGTCT 420 consensus_332#1 -------------------------------------------------------TTTTT 5 * * * consensus_332#0 CCTTTCCGGTTGCTCGATTGATCCTACCTTCGTGCAGGTATCGTTGATGCAGGACATCAA 480 consensus_332#1 TTTTTTTATTGGCT--ATTGATCTTTGCTTAACA---ATTTCAAATTTTGGGCACATGTA 60 *** * *** ******* * *** * ** * * **** * consensus_332#0 ATTGAAAGGCATGCTTATTTCCACCCAGGATGTAAGGGGCACCATGAATGAACAGAAGCA 540 consensus_332#1 ATATAAGGTACTGCAACAAAACAACAGAATTGGGTTGGGGAAAAGAAGGGAGGGGAAGGG 120 ** ** * *** ** * ** *** * * * ** **** consensus_332#0 GCAGACTCCAGGAGAACACATGCTACAAAACATAGGAACCACAACAGGAATCTGCAACTG 600 consensus_332#1 ATAAAACTACTGT-----TCTGTTACAGAACTTCAACAGTTGAAGAAAAACATACAACGG 175 * * * ** **** *** * * ** * ** * **** * consensus_332#0 CAAGATGGATCATCCATGGCCATCTTATAGGACTTATCCTCGATGTTGATGCGTGCCGGC 660 consensus_332#1 TAAAGATGACCAAGGAAGGGTAT--TGTAACAGTTATGAT--ATGAGCATA-GTTCTGTC 230 ** ** ** * ** ** * ** * **** * *** ** ** * * * consensus_332#0 GTCCAAGGAGAATGAAGTATGGGAAGGACCCCCTCTTGTACTT--GCTGTCCTGCAGCTC 718 consensus_332#1 ATACAGATAGAG------ATGCAAGTTACCTGATAGAGGATTCCAGCCTCTGAGAGAGCA 284 * ** *** *** * *** * * * * ** * consensus_332#0 AAAACAAATAGGTATGCAGTGCAAATAAATGTTGCAGAGAAGAGGAAGAGAGAGGAGGTA 778 consensus_332#1 AGAATAGTTGTATTCACAATGAAAGTTGCTGTAGCATAGCCAACTGAAATTGGTAGTTCA 344 * ** * * * ** ** ** * *** *** ** * * * * * consensus_332#0 TGGAGGAGGGT-ACCAATATCTCGCTGTG--AGACTCAACTGTCATTTGATGAAGGCCAT 835 consensus_332#1 TGAGGAGCAATCACCCATGCCAGCCCATTCCAGAACCTCTCATAAATTGATCCACTTTGC 404 ** * * *** ** * * * *** * * * ***** * consensus_332#0 AAAGTCATTAGCACAGAAGCTGGGTTCTTGAAAAACATGGAAAAGGAGCTCCCGTTTGCT 895 consensus_332#1 CCTGTCACCCACACAGATAAT-----TCTGACATGCGCGTCAAGGAAA-TCCTTTTTCTT 458 **** ****** * *** * * * ** * * *** *** * consensus_332#0 GATATCAGACCTGGGAATTTCTTTTACACCTGCTTTGTCATCACTTGCTGAAAAAGAATA 955 consensus_332#1 ATGGGCAGGACTGGA----TCATTTCTATCTGCTTGATCATTGTCA--TCGATCTCTGCA 512 *** **** ** *** * ****** **** * * * consensus_332#0 TCAAGATCTGATCGACTGATTGATCACCCTGAGTCAGCTAAAGCTTGCGGTCAGGGAGGG 1015 consensus_332#1 TCCTTCTCCTCCTGACTAGAAGTTGAAGCACGGCCATGTCTCCTTTCCGGTT--GCTCGA 570 ** ** **** * * * * * ** * ** **** * * consensus_332#0 GTAAGTGCAACGTGAGGCCTGCGTCACTCGCTCTTGAC-TTGTACCGCGATCCATTATTG 1074 consensus_332#1 TTGATCCTACCTTCGTGCAGGTATCGTTGATGCAGGACATCANATTGAAAGGCATGCTTA 630 * * * * * ** * ** * * *** * * * * *** ** consensus_332#0 GTGGCATGGAAATTCTTAATCCAATCACAATAATCAGCAGCCAGCCAAGCAAAACGAGGA 1134 consensus_332#1 TTTCCACCCAGGTA-TTACTCTGTTCCTGGTACTCC-------------CAGAACTTGNT 676 * ** * * *** ** ** ** ** ** *** * consensus_332#0 AGGTGTTCTTGCCTACGCTGTGACCATAGCACAGCAGTACAGAACTACAGCGCGGTGCAA 1194 consensus_332#1 TGTC--TTCTGCTTAAACT----------------------------------------- 693 * * *** ** ** consensus_332#0 TCCAACTCCTGTTTCACTCAACTAGTCAAGCTTCTCTTCCTGCTGGATGATCGATCGGCT 1254 consensus_332#1 ------------------------------------------------------------ consensus_332#0 CGTCAGAAGCCATGCAGGCAAGGTAATTAATTACATTACACACTCCCATTTAGGGCCCCT 1314 consensus_332#1 ------------------------------------------------------------ consensus_332#0 TTGAATAGTCGGATTGAGAAAGCGTAGGAATAGGAAAAACGTAGGATTTTGATAGGAATG 1374 consensus_332#1 ------------------------------------------------------------ consensus_332#0 TAAGTGTAAAACAGAGGATTGCAAAACACAGAAAAAACACAGGAATGAACGTTTGATT 1432 consensus_332#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||