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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2116 fasta sequence
[ATGACAGGCAGCTCATCAATGAGCTACTAGAATTCCTTGATAAAAAGAGGTACTTGATTGTTATTGATGATATATGGGAGACATCAACATGGGATTTGATTAAAAATGCTTTGCCAGATAGTAATTGTGAAAGTAGAATAATCACAACTACTCGTATTTCCAAAGTTGCTGAACAGGTTGGTGACATTTACAACATACAACCGCTTTTGATGACAATGCTGAAAAATTATTCTACACCAGAATATTTGGTTTTGATGGAAAATATCCAAGTAATCAGTTGACTGAGGTATCAAAGAAGATTTTGAAGAAATGTGGTGGTATAAACCCAACAATGAATGGTCCAAGGTTTATGACTCTATTGGGTTTGGACAAGAAGACAGCAAGGATGTTCGGAACACAAGAAAGATATTGCCTTTTAGCTATTACGATCTACCCATTCAATTAAGGACTTGCTTATTGTATCTATCCATATTTCCAGAAGATTATTGGATTGAGAAATACCAATTGATTTGGAGATGGATAGCTGAAGGTTTTGTCCACGAGGAAAAGGGGCTAGTGTTATTTGAGCAGGGGGAGAGATTCCTCGACGAGCTGATAAATAGAAGCTTAATCCAGCCATCAGATCGTTATCATAGTGGTATTGTAAATGGCTGTCGTGTTCATGACATGGTGCTTGATCTCATTCGTTCCTTGTCGAGTGAAGAGAATTTTTGTGCTATGCTGCATAAGGAACAAACCATGCTTTCACAGAACAACATTGTCCGCAGGTTAGCCATCCACAAAAGAATTCTAGAGCATAACCCTAAGATGAATGTGCGCATGGCACAAGTGAGGTCATTCAATGCCTACATGTGCGGTCATATGGATTGTATGCCCCCGCTATGGAGCTTTAAAGTTGTGCGCGTGTTAGTCTTAGATTTATGTAATTTTACGGGAAGTCCTCATCTTGAGCCTATTGGGAAATTGCTTCACCTCAAGTACCTAGGACTAGTGAACACGGCCATTGCTGAGCTCCCCAAGGAGGTTGGGAACCTCACATTGTTGCAGACGTTAGACATATGGCGCACTAGTATAGAAGAACTTCCATCAACTGTTGGTAAGCTGAAGCGGCTGATCTGCCTGCGAGCTGACAGCAACACGAGAGTGCCAGCGGGGGTGATAGGGAGCTTAACATCCCTACAGCAACTGCGCCTTCACTCTGCTGACAAGTCCCCGAGCGCCGTTGTAGAGCTAGGTAAGCTGGTGGAGCTAAGAGTGCTTGAAATCCAGTTCTGCAAGATGGATCAGAACTCACGGAGATCTCTAGTGGAATCCGTGTGCAACCTTTGCAACATACAAGTTCTCGAAGTTCACTATGATCACTCTGGACCTACAGAGTGGGCGTACCTAGGTAGCAGCTGGGAAGGCTGGGTGCCCCATCCACGGCTCCGCCAGTTCTTGCTGAGAGCCATCTCTCTGCCATGACTACCGCTGTGGATCAACTCCTCGCACGTCGCACACCTTTCCTACCTTCAACTAGGAGTGGGCTTTATAGATGTCCAGGATCTACACACTCTTGGGAGGTTGCCAGCGCTTCGTTGCCTCTACATATCTAGCGGTATTCTGCTATCCTACGTCGTCGCCGGTGGAGATGGATTGTTTCAAAATCTAAGGCATTGCACGACCAACTTAGAGTTCATGTTTCAACAGGGAGCAATGCCGATGCTTGCGCACCTCGAGTTCAGGGTCAGTGTGCTGGGCCTGGGCAGGAGGGAGGACCCTGCAGGCTTGGGGTTGGGGCACCTTCCTTTCCTTGAACTTGTTACGCTGTACTTGCAATGCTCTGGTGCCAGCATTGTGGAGGTTGCGGAAGTGAAGGTAATGCTGAGGCATGAGGTCCATGTTCATCCCAACCATCCTACCCTTAATTTGGAAGAATACCATTGCCAAAGCCAACAGCCCGAAGATGATGACAGCGGTGGATCCGTATAAAAATATTTACTAGTCAATGGACTGGGCGAGACCAGTGACCAGTACTGTACATAGCCTGCATTTGTTCAGGTTTGTTTAGCTGTAACAGAATTTTCATTGAACATGGTTCCAAAATTCAGAAGTTGGTAATTCTACAACCAACTGG]
[+] EMBL AK108571 [ATGACAGGCAGCTCATCAATGAGCTACTAGAATTCCTTGATAAAAAGAGGTACTTGATTGTTATTGATGATATATGGGAGACATCAACATGGGATTTGATTAAAAATGCTTTGCCAGATAGTAATTGTGAAAGTAGAATAATCACAACTACTCGTATTTCCAAAGTTGCTGAACAGGTTGGTGACATTTACAACATACAACCGCTTTTGATGACAATGCTGAAAAATTATTCTACACCAGAATATTTGGTTTTGATGGAAAATATCCAAGTAATCAGTTGACTGAGGTATCAAAGAAGATTTTGAAGAAATGTGGTGGTATAAACCCAACAATGAATGGTCCAAGGTTTATGACTCTATTGGGTTTGGACAAGAAGACAGCAAGGATGTTCGGAACACAAGAAAGATATTGCCTTTTAGCTATTACGATCTACCCATTCAATTAAGGACTTGCTTATTGTATCTATCCATATTTCCAGAAGATTATTGGATTGAGAAATACCAATTGATTTGGAGATGGATAGCTGAAGGTTTTGTCCACGAGGAAAAGGGGCTAGTGTTATTTGAGCAGGGGGAGAGATTCCTCGACGAGCTGATAAATAGAAGCTTAATCCAGCCATCAGATCGTTATCATAGTGGTATTGTAAATGGCTGTCGTGTTCATGACATGGTGCTTGATCTCATTCGTTCCTTGTCGAGTGAAGAGAATTTTTGTGCTATGCTGCATAAGGAACAAACCATGCTTTCACAGAACAACATTGTCCGCAGGTTAGCCATCCACAAAAGAATTCTAGAGCATAACCCTAAGATGAATGTGCGCATGGCACAAGTGAGGTCATTCAATGCCTACATGTGCGGTCATATGGATTGTATGCCCCCGCTATGGAGCTTTAAAGTTGTGCGCGTGTTAGTCTTAGATTTATGTAATTTTACGGGAAGTCCTCATCTTGAGCCTATTGGGAAATTGCTTCACCTCAAGTACCTAGGACTAGTGAACACGGCCATTGCTGAGCTCCCCAAGGAGGTTGGGAACCTCACATTGTTGCAGACGTTAGACATATGGCGCACTAGTATAGAAGAACTTCCATCAACTGTTGGTAAGCTGAAGCGGCTGATCTGCCTGCGAGCTGACAGCAACACGAGAGTGCCAGCGGGGGTGATAGGGAGCTTAACATCCCTACAGCAACTGCGCCTTCACTCTGCTGACAAGTCCCCGAGCGCCGTTGTAGAGCTAGGTAAGCTGGTGGAGCTAAGAGTGCTTGAAATCCAGTTCTGCAAGATGGATCAGAACTCACGGAGATCTCTAGTGGAATCCGTGTGCAACCTTTGCAACATACAAGTTCTCGAAGTTCACTATGATCACTCTGGACCTACAGAGTGGGCGTACCTAGGTAGCAGCTGGGAAGGCTGGGTGCCCCATCCACGGCTCCGCCAGTTCTTGCTGAGAGCCATCTCTCTGCCATGACTACCGCTGTGGATCAACTCCTCGCACGTCGCACACCTTTCCTACCTTCAACTAGGAGTGGGCTTTATAGATGTCCAGGATCTACACACTCTTGGGAGGTTGCCAGCGCTTCGTTGCCTCTACATATCTAGCGGTATTCTGCTATCCTACGTCGTCGCCGGTGGAGATGGATTGTTTCAAAATCTAAGGCATTGCACGACCAACTTAGAGTTCATGTTTCAACAGGGAGCAATGCCGATGCTTGCGCACCTCGAGTTCAGGGTCAGTGTGCTGGGCCTGGGCAGGAGGGAGGACCCTGCAGGCTTGGGGTTGGGGCACCTTCCTTTCCTTGAACTTGTTACGCTGTACTTGCAATGCTCTGGTGCCAGCATTGTGGAGGTTGCGGAAGTGAAGGTAATGCTGAGGCATGAGGTCCATGTTCATCCCAACCATCCTACCCTTAATTTGGAAGAATACCATTGCCAAAGCCAACAGCCCGAAGATGATGACAGCGGTGGATCCGTATAAAAATATTTACTAGTCAATGGACTGGGCGAGACCAGTGACCAGTACTGTACATAGCCTGCATTTGTTCAGGTTTGTTTAGCTGTAACAGAATTTTCATTGAACATGGTTCCAAAATTCAGAAGTTGGTAATTCTACAACCAACTGG]
consensusID : consensus_3329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 791 fasta sequence
[TAAATAGAAGCTTGATCCAGCCAACAGATTGTTTTATAGTAGTATTGTAGATGGAGCTGATAAATAGAAGCTTGATCCAGCCAACAGATTGTTTTCATAGTAGTATTGTAGATGGTTGTCGTATTCACGACATGGTGCTTGATCTCATCCATTCCTTGTCGAGTGAAGAGAATTTTTCTACTCTGCTAGATAAGGAGCAGCACACGCTTTCACAAAGCAACAATGTCCGCAGGTTAGCCATCCACAAAAGAGTTCTAGAGCATAACCCTAAGATGAATGTGTGCATGGCACAAGTGAGGTCATTCAATGCCTACATGTGTGATCATATGGATTGTATGCCCCCACTATGGAGCTTTAAAGTTGTACGCGTGTTAGTCCTAGATTTATGTAATTTTACTGGAAATGCTCATCTTGAGCCTATTGGGAGATTGCTTCACCTGAAGTACCTAGGACTAGTGAACACAACAATTGCCGAGCTCCCAAAGGAGGTTGGAAACCTCATGTTGTTGCAGAGCTAGGCAAGTTGACGGAACTAAGAGTGCTGGAAATCCAGTTCTGCAAGATGGGACAGAACTCAAGGAAAGCTCTAGTGGAATCCGTGTGCAACCTATGCAACACCCAAGTTCTCGAAGTTCGATACGATCACTCTGGACCTGCGGAGTTGGTGTACCTAGGCAGCAGCTGGGAAAGCTGGGTGCCCCCATNCTCGGTTCGTCAGTTCTTGCTGGGNGCTTTCTTTTTGNCCCGACTACCATTGNGGATCAACTNCTTACATGNTGNGCACCNTTTNC]
[+] EMBL CA766775 [TAAATAGAAGCTTGATCCAGCCAACAGATTGTTTTATAGTAGTATTGTAGATGGAGCTGATAAATAGAAGCTTGATCCAGCCAACAGATTGTTTTCATAGTAGTATTGTAGATGGTTGTCGTATTCACGACATGGTGCTTGATCTCATCCATTCCTTGTCGAGTGAAGAGAATTTTTCTACTCTGCTAGATAAGGAGCAGCACACGCTTTCACAAAGCAACAATGTCCGCAGGTTAGCCATCCACAAAAGAGTTCTAGAGCATAACCCTAAGATGAATGTGTGCATGGCACAAGTGAGGTCATTCAATGCCTACATGTGTGATCATATGGATTGTATGCCCCCACTATGGAGCTTTAAAGTTGTACGCGTGTTAGTCCTAGATTTATGTAATTTTACTGGAAATGCTCATCTTGAGCCTATTGGGAGATTGCTTCACCTGAAGTACCTAGGACTAGTGAACACAACAATTGCCGAGCTCCCAAAGGAGGTTGGAAACCTCATGTTGTTGCAGAGCTAGGCAAGTTGACGGAACTAAGAGTGCTGGAAATCCAGTTCTGCAAGATGGGACAGAACTCAAGGAAAGCTCTAGTGGAATCCGTGTGCAACCTATGCAACACCCAAGTTCTCGAAGTTCGATACGATCACTCTGGACCTGCGGAGTTGGTGTACCTAGGCAGCAGCTGGGAAAGCTGGGTGCCCCCATNCTCGGTTCGTCAGTTCTTGCTGGGNGCTTTCTTTTTGNCCCGACTACCATTGNGGATCAACTNCTTACATGNTGNGCACCNTTTNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3329#0 ATGACAGGCAGCTCATCAATGAGCTACTAGAATTCCTTGATAAAAAGAGGTACTTGATTG 60
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 TTATTGATGATATATGGGAGACATCAACATGGGATTTGATTAAAAATGCTTTGCCAGATA 120
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 GTAATTGTGAAAGTAGAATAATCACAACTACTCGTATTTCCAAAGTTGCTGAACAGGTTG 180
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 GTGACATTTACAACATACAACCGCTTTTGATGACAATGCTGAAAAATTATTCTACACCAG 240
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 AATATTTGGTTTTGATGGAAAATATCCAAGTAATCAGTTGACTGAGGTATCAAAGAAGAT 300
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 TTTGAAGAAATGTGGTGGTATAAACCCAACAATGAATGGTCCAAGGTTTATGACTCTATT 360
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 GGGTTTGGACAAGAAGACAGCAAGGATGTTCGGAACACAAGAAAGATATTGCCTTTTAGC 420
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 TATTACGATCTACCCATTCAATTAAGGACTTGCTTATTGTATCTATCCATATTTCCAGAA 480
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 GATTATTGGATTGAGAAATACCAATTGATTTGGAGATGGATAGCTGAAGGTTTTGTCCAC 540
consensus_3329#1 ----------------------------------------TAAATAGAAGCTTGATCCA- 19
** * * * ** ****
consensus_3329#0 GAGGAAAAGGGGCTAGTGTTATTTGAGCAGGGGGAGAGATTCCTCGACGAGCTGATAAAT 600
consensus_3329#1 ---GCCAACAGATT-GTTTTAT---AGTAGTATTGTAGATG-------GAGCTGATAAAT 65
* ** * * ** **** ** ** **** ************
consensus_3329#0 AGAAGCTTAATCCAGCCATCAGATCGTTATCATAGTGGTATTGTAAATGGCTGTCGTGTT 660
consensus_3329#1 AGAAGCTTGATCCAGCCAACAGATTGTTTTCATAGTAGTATTGTAGATGGTTGTCGTATT 125
******** ********* ***** *** ******* ******** **** ****** **
consensus_3329#0 CATGACATGGTGCTTGATCTCATTCGTTCCTTGTCGAGTGAAGAGAATTTTTGTGCTATG 720
consensus_3329#1 CACGACATGGTGCTTGATCTCATCCATTCCTTGTCGAGTGAAGAGAATTTTTCTACTCTG 185
** ******************** * ************************** * ** **
consensus_3329#0 CTGCATAAGGAACAAACCATGCTTTCACAGAACAACATTGTCCGCAGGTTAGCCATCCAC 780
consensus_3329#1 CTAGATAAGGAGCAGCACACGCTTTCACAAAGCAACAATGTCCGCAGGTTAGCCATCCAC 245
** ******* ** ** ********* * ***** **********************
consensus_3329#0 AAAAGAATTCTAGAGCATAACCCTAAGATGAATGTGCGCATGGCACAAGTGAGGTCATTC 840
consensus_3329#1 AAAAGAGTTCTAGAGCATAACCCTAAGATGAATGTGTGCATGGCACAAGTGAGGTCATTC 305
****** ***************************** ***********************
consensus_3329#0 AATGCCTACATGTGCGGTCATATGGATTGTATGCCCCCGCTATGGAGCTTTAAAGTTGTG 900
consensus_3329#1 AATGCCTACATGTGTGATCATATGGATTGTATGCCCCCACTATGGAGCTTTAAAGTTGTA 365
************** * ********************* ********************
consensus_3329#0 CGCGTGTTAGTCTTAGATTTATGTAATTTTACGGGAAGTCCTCATCTTGAGCCTATTGGG 960
consensus_3329#1 CGCGTGTTAGTCCTAGATTTATGTAATTTTACTGGAAATGCTCATCTTGAGCCTATTGGG 425
************ ******************* **** * ********************
consensus_3329#0 AAATTGCTTCACCTCAAGTACCTAGGACTAGTGAACACGGCCATTGCTGAGCTCCCCAAG 1020
consensus_3329#1 AGATTGCTTCACCTGAAGTACCTAGGACTAGTGAACACAACAATTGCCGAGCTCCCAAAG 485
* ************ *********************** * ***** ******** ***
consensus_3329#0 GAGGTTGGGAACCTCACATTGTTGCAGACGTTAGACATATGGCGCACTAGTATAGAAGAA 1080
consensus_3329#1 GAGGTTGGAAACCTCATGTTGTTGCAGA-------------------------------- 513
******** ******* **********
consensus_3329#0 CTTCCATCAACTGTTGGTAAGCTGAAGCGGCTGATCTGCCTGCGAGCTGACAGCAACACG 1140
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 AGAGTGCCAGCGGGGGTGATAGGGAGCTTAACATCCCTACAGCAACTGCGCCTTCACTCT 1200
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 GCTGACAAGTCCCCGAGCGCCGTTGTAGAGCTAGGTAAGCTGGTGGAGCTAAGAGTGCTT 1260
consensus_3329#1 -----------------------------GCTAGGCAAGTTGACGGAACTAAGAGTGCTG 544
****** *** ** *** ***********
consensus_3329#0 GAAATCCAGTTCTGCAAGATGGATCAGAACTCACGGAGATCTCTAGTGGAATCCGTGTGC 1320
consensus_3329#1 GAAATCCAGTTCTGCAAGATGGGACAGAACTCAAGGAAAGCTCTAGTGGAATCCGTGTGC 604
********************** ********* *** * ********************
consensus_3329#0 AACCTTTGCAACATACAAGTTCTCGAAGTTCACTATGATCACTCTGGACCTACAGAGTGG 1380
consensus_3329#1 AACCTATGCAACACCCAAGTTCTCGAAGTTCGATACGATCACTCTGGACCTGCGGAGTTG 664
***** ******* **************** ** *************** * **** *
consensus_3329#0 GCGTACCTAGGTAGCAGCTGGGAAGGCTGGGTGCCCC-ATCCACGGCTCCGCCAGTTCTT 1439
consensus_3329#1 GTGTACCTAGGCAGCAGCTGGGAAAGCTGGGTGCCCCCATNCTCGG-TTCGTCAGTTCTT 723
* ********* ************ ************ ** * *** * ** ********
consensus_3329#0 GCTGAGAGCCATCTCTCTGCCATGACTACCGCTGTGGATCAACTCCTCGCACGTCGCACA 1499
consensus_3329#1 GCTGGGNGCTTTCTTTTTGNCCCGACTACCATTGNGGATCAACTNCTTACATGNTGNGCA 783
**** * ** *** * ** * ******* ** ********* ** ** * * **
consensus_3329#0 CCTTTCCTACCTTCAACTAGGAGTGGGCTTTATAGATGTCCAGGATCTACACACTCTTGG 1559
consensus_3329#1 CCNTTTNC---------------------------------------------------- 791
** **
consensus_3329#0 GAGGTTGCCAGCGCTTCGTTGCCTCTACATATCTAGCGGTATTCTGCTATCCTACGTCGT 1619
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 CGCCGGTGGAGATGGATTGTTTCAAAATCTAAGGCATTGCACGACCAACTTAGAGTTCAT 1679
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 GTTTCAACAGGGAGCAATGCCGATGCTTGCGCACCTCGAGTTCAGGGTCAGTGTGCTGGG 1739
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 CCTGGGCAGGAGGGAGGACCCTGCAGGCTTGGGGTTGGGGCACCTTCCTTTCCTTGAACT 1799
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 TGTTACGCTGTACTTGCAATGCTCTGGTGCCAGCATTGTGGAGGTTGCGGAAGTGAAGGT 1859
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 AATGCTGAGGCATGAGGTCCATGTTCATCCCAACCATCCTACCCTTAATTTGGAAGAATA 1919
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 CCATTGCCAAAGCCAACAGCCCGAAGATGATGACAGCGGTGGATCCGTATAAAAATATTT 1979
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 ACTAGTCAATGGACTGGGCGAGACCAGTGACCAGTACTGTACATAGCCTGCATTTGTTCA 2039
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 GGTTTGTTTAGCTGTAACAGAATTTTCATTGAACATGGTTCCAAAATTCAGAAGTTGGTA 2099
consensus_3329#1 ------------------------------------------------------------
consensus_3329#0 ATTCTACAACCAACTGG 2116
consensus_3329#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||