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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3340 cluster # 3340       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3340#0 length = 769 sequences # 1  
consensus_3340#1 length = 163 sequences # 1  

consensusID : consensus_3340#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 769
fasta sequence
                              [CCTTGCGTTGAGCTTAGCTTTAGCTGATCGAATCGAGAAGAGACGTAAATTAAGCAAGCGATCGATCGAACTGATCTCGTCGGCCGATCGATTGATCGGATTTGGTTCCATGGAGAGGGGTTGCAACGGCAATGGCGGCGGCGGCGGCGGCGTGAAGGTGACCTTCATCGAGACGCAGTTCGTCACCTCCGACGCCGCGGGCTTCAAGTCGCTCGTGCAGCGCCTCACCGGCAACGACGCAGCCGTGCCGGCGGCGCCGCCACAGAGGCCGCGGCCGTGCCGTGCAGACGGGTGGAGGGGAGCCGGCGGCGCGAGCGCGACGGTGGTGAAGCGGGAAGCCGTGCCGCCGCCGGTGGCGCCGTGGGTGGATGAGATGATGATGCTGTACGAGACGTGCGACCTCGCCGAGATGTTGCGCGTCGACGTCGTCGGCGCGAGCGGCGGAGGACGGTGCCACGGCGGCGGCGGATACGGTGGTTTTCCATGCTGATCGACGGCCGGCGATGAGCTCAGTCCATCTTCAGTTTTGGATGCTCTCTGCATGTTGTTCCATTCTTTTTTAACTGAGATTATCTGTATATTGCTCCATGCCTTGTTGTACCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACTGAAAAAAAAAACAAATTGATAGAGCCGATGAATCAAAGGATTTTGGAGTCACAACAGGGTTTATACTTTCCGAAAAGGCCGAAATTTTGGTAATTTCAGTGGGCACCAA]

[+] EMBL AK109286             [CCTTGCGTTGAGCTTAGCTTTAGCTGATCGAATCGAGAAGAGACGTAAATTAAGCAAGCGATCGATCGAACTGATCTCGTCGGCCGATCGATTGATCGGATTTGGTTCCATGGAGAGGGGTTGCAACGGCAATGGCGGCGGCGGCGGCGGCGTGAAGGTGACCTTCATCGAGACGCAGTTCGTCACCTCCGACGCCGCGGGCTTCAAGTCGCTCGTGCAGCGCCTCACCGGCAACGACGCAGCCGTGCCGGCGGCGCCGCCACAGAGGCCGCGGCCGTGCCGTGCAGACGGGTGGAGGGGAGCCGGCGGCGCGAGCGCGACGGTGGTGAAGCGGGAAGCCGTGCCGCCGCCGGTGGCGCCGTGGGTGGATGAGATGATGATGCTGTACGAGACGTGCGACCTCGCCGAGATGTTGCGCGTCGACGTCGTCGGCGCGAGCGGCGGAGGACGGTGCCACGGCGGCGGCGGATACGGTGGTTTTCCATGCTGATCGACGGCCGGCGATGAGCTCAGTCCATCTTCAGTTTTGGATGCTCTCTGCATGTTGTTCCATTCTTTTTTAACTGAGATTATCTGTATATTGCTCCATGCCTTGTTGTACCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACTGAAAAAAAAAACAAATTGATAGAGCCGATGAATCAAAGGATTTTGGAGTCACAACAGGGTTTATACTTTCCGAAAAGGCCGAAATTTTGGTAATTTCAGTGGGCACCAA]


>consensus_3340#0 CCTTGCGTTGAGCTTAGCTTTAGCTGATCGAATCGAGAAGAGACGTAAATTAAGCAAGCG ATCGATCGAACTGATCTCGTCGGCCGATCGATTGATCGGATTTGGTTCCATGGAGAGGGG TTGCAACGGCAATGGCGGCGGCGGCGGCGGCGTGAAGGTGACCTTCATCGAGACGCAGTT CGTCACCTCCGACGCCGCGGGCTTCAAGTCGCTCGTGCAGCGCCTCACCGGCAACGACGC AGCCGTGCCGGCGGCGCCGCCACAGAGGCCGCGGCCGTGCCGTGCAGACGGGTGGAGGGG AGCCGGCGGCGCGAGCGCGACGGTGGTGAAGCGGGAAGCCGTGCCGCCGCCGGTGGCGCC GTGGGTGGATGAGATGATGATGCTGTACGAGACGTGCGACCTCGCCGAGATGTTGCGCGT CGACGTCGTCGGCGCGAGCGGCGGAGGACGGTGCCACGGCGGCGGCGGATACGGTGGTTT TCCATGCTGATCGACGGCCGGCGATGAGCTCAGTCCATCTTCAGTTTTGGATGCTCTCTG CATGTTGTTCCATTCTTTTTTAACTGAGATTATCTGTATATTGCTCCATGCCTTGTTGTA CCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACT GAAAAAAAAAACAAATTGATAGAGCCGATGAATCAAAGGATTTTGGAGTCACAACAGGGT TTATACTTTCCGAAAAGGCCGAAATTTTGGTAATTTCAGTGGGCACCAA



consensusID : consensus_3340#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 163
fasta sequence
                              [TGAGATTATCTGTATATTGCTCCATGCCTTGTTGTACCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACTGAAAAAAAAAACAAATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA]

[+] EMBL CF319407             [TGAGATTATCTGTATATTGCTCCATGCCTTGTTGTACCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACTGAAAAAAAAAACAAATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA]


>consensus_3340#1 TGAGATTATCTGTATATTGCTCCATGCCTTGTTGTACCCTGTTTTATATGTTTGGTTGCG ACCAGGCCATGTAATTCCGGTTCTAATCATGAAACTGAAAAAAAAAACAAATTGATAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3340#0      CCTTGCGTTGAGCTTAGCTTTAGCTGATCGAATCGAGAAGAGACGTAAATTAAGCAAGCG 60
consensus_3340#1      ------------------------------------------------------------
                                                                                  

consensus_3340#0      ATCGATCGAACTGATCTCGTCGGCCGATCGATTGATCGGATTTGGTTCCATGGAGAGGGG 120
consensus_3340#1      ------------------------------------------------------------
                                                                                  

consensus_3340#0      TTGCAACGGCAATGGCGGCGGCGGCGGCGGCGTGAAGGTGACCTTCATCGAGACGCAGTT 180
consensus_3340#1      ------------------------------------------------------------
                                                                                  

consensus_3340#0      CGTCACCTCCGACGCCGCGGGCTTCAAGTCGCTCGTGCAGCGCCTCACCGGCAACGACGC 240
consensus_3340#1      ------------------------------------------------------------
                                                                                  

consensus_3340#0      AGCCGTGCCGGCGGCGCCGCCACAGAGGCCGCGGCCGTGCCGTGCAGACGGGTGGAGGGG 300
consensus_3340#1      ------------------------------------------------------------
                                                                                  

consensus_3340#0      AGCCGGCGGCGCGAGCGCGACGGTGGTGAAGCGGGAAGCCGTGCCGCCGCCGGTGGCGCC 360
consensus_3340#1      ------------------------------------------------------------
                                                                                  

consensus_3340#0      GTGGGTGGATGAGATGATGATGCTGTACGAGACGTGCGACCTCGCCGAGATGTTGCGCGT 420
consensus_3340#1      ------------------------------------------------------------
                                                                                  

consensus_3340#0      CGACGTCGTCGGCGCGAGCGGCGGAGGACGGTGCCACGGCGGCGGCGGATACGGTGGTTT 480
consensus_3340#1      ------------------------------------------------------------
                                                                                  

consensus_3340#0      TCCATGCTGATCGACGGCCGGCGATGAGCTCAGTCCATCTTCAGTTTTGGATGCTCTCTG 540
consensus_3340#1      ------------------------------------------------------------
                                                                                  

consensus_3340#0      CATGTTGTTCCATTCTTTTTTAACTGAGATTATCTGTATATTGCTCCATGCCTTGTTGTA 600
consensus_3340#1      ------------------------TGAGATTATCTGTATATTGCTCCATGCCTTGTTGTA 36
                                              ************************************

consensus_3340#0      CCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACT 660
consensus_3340#1      CCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACT 96
                      ************************************************************

consensus_3340#0      GAAAAAAAAAACAAATTGATAGAGCCGATGAATCAAAGGATTTTGGAGTCACAACAGGGT 720
consensus_3340#1      GAAAAAAAAAACAAATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 156
                      ********************* *    *  **  ***  *      *   * ** *    

consensus_3340#0      TTATACTTTCCGAAAAGGCCGAAATTTTGGTAATTTCAGTGGGCACCAA 769
consensus_3340#1      AAAAGAA------------------------------------------ 163
                        *                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)