These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence [CCTTGCGTTGAGCTTAGCTTTAGCTGATCGAATCGAGAAGAGACGTAAATTAAGCAAGCGATCGATCGAACTGATCTCGTCGGCCGATCGATTGATCGGATTTGGTTCCATGGAGAGGGGTTGCAACGGCAATGGCGGCGGCGGCGGCGGCGTGAAGGTGACCTTCATCGAGACGCAGTTCGTCACCTCCGACGCCGCGGGCTTCAAGTCGCTCGTGCAGCGCCTCACCGGCAACGACGCAGCCGTGCCGGCGGCGCCGCCACAGAGGCCGCGGCCGTGCCGTGCAGACGGGTGGAGGGGAGCCGGCGGCGCGAGCGCGACGGTGGTGAAGCGGGAAGCCGTGCCGCCGCCGGTGGCGCCGTGGGTGGATGAGATGATGATGCTGTACGAGACGTGCGACCTCGCCGAGATGTTGCGCGTCGACGTCGTCGGCGCGAGCGGCGGAGGACGGTGCCACGGCGGCGGCGGATACGGTGGTTTTCCATGCTGATCGACGGCCGGCGATGAGCTCAGTCCATCTTCAGTTTTGGATGCTCTCTGCATGTTGTTCCATTCTTTTTTAACTGAGATTATCTGTATATTGCTCCATGCCTTGTTGTACCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACTGAAAAAAAAAACAAATTGATAGAGCCGATGAATCAAAGGATTTTGGAGTCACAACAGGGTTTATACTTTCCGAAAAGGCCGAAATTTTGGTAATTTCAGTGGGCACCAA] [+] EMBL AK109286 [CCTTGCGTTGAGCTTAGCTTTAGCTGATCGAATCGAGAAGAGACGTAAATTAAGCAAGCGATCGATCGAACTGATCTCGTCGGCCGATCGATTGATCGGATTTGGTTCCATGGAGAGGGGTTGCAACGGCAATGGCGGCGGCGGCGGCGGCGTGAAGGTGACCTTCATCGAGACGCAGTTCGTCACCTCCGACGCCGCGGGCTTCAAGTCGCTCGTGCAGCGCCTCACCGGCAACGACGCAGCCGTGCCGGCGGCGCCGCCACAGAGGCCGCGGCCGTGCCGTGCAGACGGGTGGAGGGGAGCCGGCGGCGCGAGCGCGACGGTGGTGAAGCGGGAAGCCGTGCCGCCGCCGGTGGCGCCGTGGGTGGATGAGATGATGATGCTGTACGAGACGTGCGACCTCGCCGAGATGTTGCGCGTCGACGTCGTCGGCGCGAGCGGCGGAGGACGGTGCCACGGCGGCGGCGGATACGGTGGTTTTCCATGCTGATCGACGGCCGGCGATGAGCTCAGTCCATCTTCAGTTTTGGATGCTCTCTGCATGTTGTTCCATTCTTTTTTAACTGAGATTATCTGTATATTGCTCCATGCCTTGTTGTACCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACTGAAAAAAAAAACAAATTGATAGAGCCGATGAATCAAAGGATTTTGGAGTCACAACAGGGTTTATACTTTCCGAAAAGGCCGAAATTTTGGTAATTTCAGTGGGCACCAA] consensusID : consensus_3340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence [TGAGATTATCTGTATATTGCTCCATGCCTTGTTGTACCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACTGAAAAAAAAAACAAATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA] [+] EMBL CF319407 [TGAGATTATCTGTATATTGCTCCATGCCTTGTTGTACCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACTGAAAAAAAAAACAAATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3340#0 CCTTGCGTTGAGCTTAGCTTTAGCTGATCGAATCGAGAAGAGACGTAAATTAAGCAAGCG 60 consensus_3340#1 ------------------------------------------------------------ consensus_3340#0 ATCGATCGAACTGATCTCGTCGGCCGATCGATTGATCGGATTTGGTTCCATGGAGAGGGG 120 consensus_3340#1 ------------------------------------------------------------ consensus_3340#0 TTGCAACGGCAATGGCGGCGGCGGCGGCGGCGTGAAGGTGACCTTCATCGAGACGCAGTT 180 consensus_3340#1 ------------------------------------------------------------ consensus_3340#0 CGTCACCTCCGACGCCGCGGGCTTCAAGTCGCTCGTGCAGCGCCTCACCGGCAACGACGC 240 consensus_3340#1 ------------------------------------------------------------ consensus_3340#0 AGCCGTGCCGGCGGCGCCGCCACAGAGGCCGCGGCCGTGCCGTGCAGACGGGTGGAGGGG 300 consensus_3340#1 ------------------------------------------------------------ consensus_3340#0 AGCCGGCGGCGCGAGCGCGACGGTGGTGAAGCGGGAAGCCGTGCCGCCGCCGGTGGCGCC 360 consensus_3340#1 ------------------------------------------------------------ consensus_3340#0 GTGGGTGGATGAGATGATGATGCTGTACGAGACGTGCGACCTCGCCGAGATGTTGCGCGT 420 consensus_3340#1 ------------------------------------------------------------ consensus_3340#0 CGACGTCGTCGGCGCGAGCGGCGGAGGACGGTGCCACGGCGGCGGCGGATACGGTGGTTT 480 consensus_3340#1 ------------------------------------------------------------ consensus_3340#0 TCCATGCTGATCGACGGCCGGCGATGAGCTCAGTCCATCTTCAGTTTTGGATGCTCTCTG 540 consensus_3340#1 ------------------------------------------------------------ consensus_3340#0 CATGTTGTTCCATTCTTTTTTAACTGAGATTATCTGTATATTGCTCCATGCCTTGTTGTA 600 consensus_3340#1 ------------------------TGAGATTATCTGTATATTGCTCCATGCCTTGTTGTA 36 ************************************ consensus_3340#0 CCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACT 660 consensus_3340#1 CCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACT 96 ************************************************************ consensus_3340#0 GAAAAAAAAAACAAATTGATAGAGCCGATGAATCAAAGGATTTTGGAGTCACAACAGGGT 720 consensus_3340#1 GAAAAAAAAAACAAATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 156 ********************* * * ** *** * * * ** * consensus_3340#0 TTATACTTTCCGAAAAGGCCGAAATTTTGGTAATTTCAGTGGGCACCAA 769 consensus_3340#1 AAAAGAA------------------------------------------ 163 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||